Team:TU-Munich/Modeling/Protein Predictions

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==Analysis of Receptor Sequences==
==Analysis of Receptor Sequences==
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====Examined Receptors====
====Examined Receptors====
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Revision as of 19:38, 2 July 2013


Prediction of Protein Structures

Text

Search for Homologous Structures using HHprd

Text
figure

Prediction of Possible Structure using iTasser

Text
figure



Analysis of Receptor Sequences

Text

Examined Receptors

Receptor Organism Length (aa) Sequence reference
ERF FLS2 SERK
A. thaliana A. thaliana P. patens
1031 1173 625


Prediction of Signal Peptides

Introduction: [http://www.cbs.dtu.dk/services/SignalP SignalP]
Results:
Discussion:

TUM13 Modeling Signal-P.png

Prediction of Transmembrane Regions

Introduction: [http://www.cbs.dtu.dk/services/TMHMM TMHMM]
Results:
Discussion:

TUM13 Modeling TMHMM.png


Prediction of Cellular Localization

Introduction: [http://wolfpsort.org Wolfpsort]
Results:
Discussion:

figure



Choice of the SERK Receptor

Text
figure

Analysis of Protein-Ligand Interaction

Text

Structure based prediction using PDBePISA

Text
figure

References:

http://www.ncbi.nlm.nih.gov/pubmed/6327079 Edens et al., 1984

  1. http://www.ncbi.nlm.nih.gov/pubmed/6327079 Edens et al., 1984 Edens, L., Bom, I., Ledeboer, A. M., Maat, J., Toonen, M. Y., Visser, C., and Verrips, C. T. (1984). Synthesis and processing of the plant protein thaumatin in yeast. Cell, 37(2):629–33.




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