Team:TUDelft/Modeling References

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<div style="margin-top:10px;margin-left:30px;margin-right:30px;float:left;display:inline-block;"> 
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<h2 align="center">References</h2>
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<br>
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<ol>
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<li>H. E. Kubitschek and J. A. Friske, "Determination of bacterial cell volume with the Coulter
 +
Counter", J. Bacteriol., vol. 168, pp. 1466-1467, Dec 1986.</li>
 +
 
 +
<li>L. R. Garcia and I. J. Molineux, "Rate of translocation of bacteriophage T7 DNA across the
 +
membranes of Escherichia coli," J. Bacteriol., vol. 177, pp. 4066-4076, Jul 1995.</li>
 +
 
 +
<li>M. Brunner and H. Bujard, "Promoter recognition and promoter strength in the Escherichia coli
 +
system," EMBO J., vol. 6, pp. 3139-3144, Oct 1987.</li>
 +
 
 +
<li>D. Braun, S. Basu, and R. Weiss, "Parameter estimation for two synthetic gene networks: a
 +
case study," in Acoustics, Speech, and Signal Processing, 2005. Proceedings. (ICASSP '05). IEEE
 +
International Conference on, vol. 5, pp. v/769-v/772 Vol. 5, 2005.</li>
 +
 
 +
<li>L. Sensors, "Expression systems - e.col protease: Sumo proteases," June 2013.</li>
 +
<li> A. iGEM team 2009, "Dissociation constants," October 2009.</li>
 +
<li> R. Young and H. Bremer, "Polypeptide-chain-elongation rate in Escherichia coli B/r as a function
 +
of growth rate," Biochem. J., vol. 160, pp. 185-194, Nov 1976.</li>
 +
 
 +
<li>J. A. Bernstein, A. B. Khodursky, P.-H. Lin, S. Lin-Chao, and S. N. Cohen, "Global analysis of
 +
mrna decay and abundance in escherichia coli at single-gene resolution using two-color
 +
uorescent
 +
dna microarrays," Proceedings of the National Academy of Sciences, vol. 99, no. 15, pp. 9697-9702,
 +
2002.</li>
 +
 
 +
<li>C.-H. Wu, H.-C. Lee, and B.-S. Chen, "Robust synthetic gene network design via library-based
 +
search method," Bioinformatics, vol. 27, pp. 2700-2706, Oct. 2011.</li>
 +
<li>MCLab, "Sumo protease," July 2013.</li>
 +
<li> T. D. iGEM team 2009, "Modeling parameters," October 2009.</li>
 +
<li> P. registery, \Part:bba c0040, tetracycline repressor from transposon tn10 (+lva)," July 2013.</li>
 +
<li> P. registery, \Part:bba c0051, ci repressor from e. coli phage lambda (+lva)," July 2013.</li>
 +
<li> C. Y. Chang, K. Nam, and R. Young, "S gene expression and the timing of lysis by bacteriophage
 +
lambda," J. Bacteriol., vol. 177, pp. 3283-3294, Jun 1995.</li>
 +
<li> T. T. Le, C. C. Guet, and P. Cluzel, "Protein expression enhancement in efflux-deleted mutant
 +
bacteria," Protein Expression and Purification, vol. 48, no. 1, pp. 28 - 31, 2006.</li>
 +
 
 +
<li> M. Barrio, K. Burrage, A. Leier, and T. Tian, "Oscillatory regulation of hes1: Discrete stochastic
 +
delay modelling and simulation," PLoS Comput Biol, vol. 2, p. e117, 09 2006. </li>
 +
<li>iGem Berkley 2008, https://2008.igem.org/Team:UC_Berkeley/Modeling.</li>
 +
<li>iGem Imperial 2011, https://2011.igem.org/Team:Imperial_College_London/Achievements.</li>
 +
</ol>
 +
</html>

Latest revision as of 12:04, 16 August 2013

References


  1. H. E. Kubitschek and J. A. Friske, "Determination of bacterial cell volume with the Coulter Counter", J. Bacteriol., vol. 168, pp. 1466-1467, Dec 1986.
  2. L. R. Garcia and I. J. Molineux, "Rate of translocation of bacteriophage T7 DNA across the membranes of Escherichia coli," J. Bacteriol., vol. 177, pp. 4066-4076, Jul 1995.
  3. M. Brunner and H. Bujard, "Promoter recognition and promoter strength in the Escherichia coli system," EMBO J., vol. 6, pp. 3139-3144, Oct 1987.
  4. D. Braun, S. Basu, and R. Weiss, "Parameter estimation for two synthetic gene networks: a case study," in Acoustics, Speech, and Signal Processing, 2005. Proceedings. (ICASSP '05). IEEE International Conference on, vol. 5, pp. v/769-v/772 Vol. 5, 2005.
  5. L. Sensors, "Expression systems - e.col protease: Sumo proteases," June 2013.
  6. A. iGEM team 2009, "Dissociation constants," October 2009.
  7. R. Young and H. Bremer, "Polypeptide-chain-elongation rate in Escherichia coli B/r as a function of growth rate," Biochem. J., vol. 160, pp. 185-194, Nov 1976.
  8. J. A. Bernstein, A. B. Khodursky, P.-H. Lin, S. Lin-Chao, and S. N. Cohen, "Global analysis of mrna decay and abundance in escherichia coli at single-gene resolution using two-color uorescent dna microarrays," Proceedings of the National Academy of Sciences, vol. 99, no. 15, pp. 9697-9702, 2002.
  9. C.-H. Wu, H.-C. Lee, and B.-S. Chen, "Robust synthetic gene network design via library-based search method," Bioinformatics, vol. 27, pp. 2700-2706, Oct. 2011.
  10. MCLab, "Sumo protease," July 2013.
  11. T. D. iGEM team 2009, "Modeling parameters," October 2009.
  12. P. registery, \Part:bba c0040, tetracycline repressor from transposon tn10 (+lva)," July 2013.
  13. P. registery, \Part:bba c0051, ci repressor from e. coli phage lambda (+lva)," July 2013.
  14. C. Y. Chang, K. Nam, and R. Young, "S gene expression and the timing of lysis by bacteriophage lambda," J. Bacteriol., vol. 177, pp. 3283-3294, Jun 1995.
  15. T. T. Le, C. C. Guet, and P. Cluzel, "Protein expression enhancement in efflux-deleted mutant bacteria," Protein Expression and Purification, vol. 48, no. 1, pp. 28 - 31, 2006.
  16. M. Barrio, K. Burrage, A. Leier, and T. Tian, "Oscillatory regulation of hes1: Discrete stochastic delay modelling and simulation," PLoS Comput Biol, vol. 2, p. e117, 09 2006.
  17. iGem Berkley 2008, https://2008.igem.org/Team:UC_Berkeley/Modeling.
  18. iGem Imperial 2011, https://2011.igem.org/Team:Imperial_College_London/Achievements.

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