Team:Evry/Notebook/Test
From 2013.igem.org
(Difference between revisions)
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<h1 id="week20">Week 20: 28<sup>th</sup> October - 3<sup>rd</sup> November</h1> | <h1 id="week20">Week 20: 28<sup>th</sup> October - 3<sup>rd</sup> November</h1> | ||
+ | <h3> FUR and iron metabolism in bacteria </h3> | ||
+ | |||
+ | <p><ul><li>Ahmad, R., Brandsdal, B.O., Michaud-Soret, I., and Willassen, N.-P. (2009). <i>Ferric uptake regulator protein: Binding free energy calculations and per-residue free energy decomposition.</i> Proteins: Structure, Function, and Bioinformatics 75, 373–386. | ||
+ | <a href="http://onlinelibrary.wiley.com/doi/10.1002/prot.22247/pdf | ||
+ | "target=‘_blank'>(link to the pdf)</a> | ||
+ | |||
+ | <li>Andrews, S.C., Robinson, A.K., and Rodríguez-Quiñones, F. (2003). <i>Bacterial iron homeostasis.</i> FEMS Microbiol. Rev. 27, 215–237. | ||
+ | <a href="http://onlinelibrary.wiley.com/doi/10.1016/S0168-6445%2803%2900055-X/pdf" target=‘_blank'>(link to the pdf)</a> | ||
+ | |||
+ | <li>Escolar, L. , Pérez-Martín, J., and De Lorenzo, V. (1991). <i>Opening the Iron Box: Transcriptional Metalloregulation by the Fur Protein.</i> Journal of Bacteriology 181,20. | ||
+ | <a href="http://jb.asm.org/content/181/20/6223.full.pdf+html" target=‘_blank'>(link to the pdf)</a> | ||
+ | |||
+ | <li>Guerinot, M.L. (1994). <i>Microbial iron transport. </i> Annu. Rev. Microbiol. 48, 743–772. | ||
+ | |||
+ | <li>Oglesby-Sherrouse, A.G., and Murphy, E.R. (2013). <i>Iron-responsive bacterial small RNAs: variations on a theme. </i> Metallomics 5, 276. | ||
+ | |||
+ | <li>Pecqueur, L. (2006). <i>Structural Changes of Escherichia coli Ferric Uptake Regulator during Metal-dependent Dimerization and Activation Explored by NMR and X-ray Crystallography. </i> Journal of Biological Chemistry 281, 21286–21295. | ||
+ | <a href="http://www.jbc.org/content/281/30/21286.full.pdf+html" target=‘_blank'>(link to the pdf)</a> | ||
+ | |||
+ | <li>Schilling, C.H., Held, L., Torre, M., and Saier, M.H., Jr (2000). <i>GRASP-DNA: a web application to screen prokaryotic genomes for specific DNA-binding sites and repeat motifs. </i> J. Mol. Microbiol. Biotechnol. 2, 495–500. | ||
+ | <a href="http://www.horizonpress.com/backlist/jmmb/v/v2/v2n4/22.pdf" target=‘_blank'>(link to the pdf)</a> | ||
+ | |||
+ | |||
+ | <li>Tiss, A., Barre, O., Michaud-Soret, I., and Forest, E. (2005). <i>Characterization of the DNA-binding site in the ferric uptake regulator protein from Escherichia coli by UV crosslink to the pdfing and mass spectrometry. </i> FEBS Letters 579, 5454–5460. | ||
+ | <a href="http://ac.els-cdn.com/S0014579305010860/1-s2.0-S0014579305010860-main.pdf?_tid=a7f62652-116b-11e3-82b4-00000aab0f27&acdnat=1377864162_b8c44ccc0b08ec2dde05b76867718045" target=‘_blank'>(link to the pdf)</a> | ||
+ | |||
+ | |||
+ | <li>Tsolis, R., Baumler, A.J., Stojiljkovic, I., and Heffron, F. (1995). <i>Fur regulon of Salmonella typhimurium: identification of new iron-regulated genes. </i> Journal of Bacteriology 177, 4628–4637. | ||
+ | <a href="http://jb.asm.org/content/177/16/4628.full.pdf+html" target=‘_blank'>(link to the pdf)</a> | ||
+ | |||
+ | |||
+ | <li>Valdebenito, M., Crumbliss, A.L., Winkelmann, G., and Hantke, K. (2006). <i>Environmental factors influence the production of enterobactin, salmochelin, aerobactin, and yersiniabactin in Escherichia coli strain Nissle 1917. </i> International Journal of Medical Microbiology 296, 513–520. | ||
+ | |||
+ | <li>Visca, P., Leoni, L., Wilson, M.J., and Lamont, I.L. (2002). <i>Iron transport and regulation, cell signalling and genomics: lessons from Escherichia coli and Pseudomonas. </i> Mol. Microbiol. 45, 1177–1190. | ||
+ | <a href="http://onlinelibrary.wiley.com/doi/10.1046/j.1365-2958.2002.03088.x/pdf" target=‘_blank'>(link to the pdf)</a> | ||
+ | |||
+ | <li>Zhang, Z., Gosset, G., Barabote, R., Gonzalez, C.S., Cuevas, W.A., and Saier, M.H. (2005). <i>Functional Interactions between the Carbon and Iron Utilization Regulators, Crp and Fur, in Escherichia coli. </i> Journal of Bacteriology 187, 980–990. | ||
+ | <a href="http://jb.asm.org/content/187/3/980.full.pdf+html" target=‘_blank'>(link to the pdf)</a> | ||
+ | </p> | ||
+ | </ul> | ||
</div> | </div> |
Revision as of 11:07, 7 September 2013
Week 1: 17th June - 23rd June
Week 2: 24th June - 30th June
Week 3: 1st July - 7th July
Week 4: 8th July - 14th July
Week 5: 15th July - 21st July
Week 6: 22nd July - 28th July
Week 7: 29th July - 4th August
Week 8: 5th August - 11th August
Week 9: 12th August - 18th August
Week 10: 19th August - 25th August
Week 11: 26th August - 1st September
Week 12: 2nd September - 8th September
Week 13: 9th September - 15th September
Week 14: 16th September - 22nd September
Week 15: 23rd September - 29th September
Week 16: 30th September - 6th October
Week 17: 7th October - 13th October
Week 18: 14th October - 20th October
Week 19: 21st October - 27th October
Week 20: 28th October - 3rd November
FUR and iron metabolism in bacteria
- Ahmad, R., Brandsdal, B.O., Michaud-Soret, I., and Willassen, N.-P. (2009). Ferric uptake regulator protein: Binding free energy calculations and per-residue free energy decomposition. Proteins: Structure, Function, and Bioinformatics 75, 373–386. (link to the pdf)
- Andrews, S.C., Robinson, A.K., and Rodríguez-Quiñones, F. (2003). Bacterial iron homeostasis. FEMS Microbiol. Rev. 27, 215–237. (link to the pdf)
- Escolar, L. , Pérez-Martín, J., and De Lorenzo, V. (1991). Opening the Iron Box: Transcriptional Metalloregulation by the Fur Protein. Journal of Bacteriology 181,20. (link to the pdf)
- Guerinot, M.L. (1994). Microbial iron transport. Annu. Rev. Microbiol. 48, 743–772.
- Oglesby-Sherrouse, A.G., and Murphy, E.R. (2013). Iron-responsive bacterial small RNAs: variations on a theme. Metallomics 5, 276.
- Pecqueur, L. (2006). Structural Changes of Escherichia coli Ferric Uptake Regulator during Metal-dependent Dimerization and Activation Explored by NMR and X-ray Crystallography. Journal of Biological Chemistry 281, 21286–21295. (link to the pdf)
- Schilling, C.H., Held, L., Torre, M., and Saier, M.H., Jr (2000). GRASP-DNA: a web application to screen prokaryotic genomes for specific DNA-binding sites and repeat motifs. J. Mol. Microbiol. Biotechnol. 2, 495–500. (link to the pdf)
- Tiss, A., Barre, O., Michaud-Soret, I., and Forest, E. (2005). Characterization of the DNA-binding site in the ferric uptake regulator protein from Escherichia coli by UV crosslink to the pdfing and mass spectrometry. FEBS Letters 579, 5454–5460. (link to the pdf)
- Tsolis, R., Baumler, A.J., Stojiljkovic, I., and Heffron, F. (1995). Fur regulon of Salmonella typhimurium: identification of new iron-regulated genes. Journal of Bacteriology 177, 4628–4637. (link to the pdf)
- Valdebenito, M., Crumbliss, A.L., Winkelmann, G., and Hantke, K. (2006). Environmental factors influence the production of enterobactin, salmochelin, aerobactin, and yersiniabactin in Escherichia coli strain Nissle 1917. International Journal of Medical Microbiology 296, 513–520.
- Visca, P., Leoni, L., Wilson, M.J., and Lamont, I.L. (2002). Iron transport and regulation, cell signalling and genomics: lessons from Escherichia coli and Pseudomonas. Mol. Microbiol. 45, 1177–1190. (link to the pdf)
- Zhang, Z., Gosset, G., Barabote, R., Gonzalez, C.S., Cuevas, W.A., and Saier, M.H. (2005). Functional Interactions between the Carbon and Iron Utilization Regulators, Crp and Fur, in Escherichia coli. Journal of Bacteriology 187, 980–990. (link to the pdf)