Team:BYU Provo/Notebook/Cholera - Enzymes/July-August
From 2013.igem.org
Mschellhous (Talk | contribs) (Created page with "{{TeamBYUProvo}} <br> {| width="100%" | colspan="3" | <font color="#333399" size="5" font face="Calibri"> : Cholera - Enzyme Notebook July - August'''</font> <br> <br> |- v...") |
|||
(10 intermediate revisions not shown) | |||
Line 18: | Line 18: | ||
<font size = "4"> | <font size = "4"> | ||
- | : <u> '''Cholera | + | : <u> '''Cholera Enzyme''' </u> </font> |
: [[Team:BYU Provo/Notebook/Cholera - Enzymes/March-April|March-April]] | : [[Team:BYU Provo/Notebook/Cholera - Enzymes/March-April|March-April]] | ||
Line 27: | Line 27: | ||
: [[Team:BYU Provo/Notebook/Cholera - Enzymes/September-October|September-October]] | : [[Team:BYU Provo/Notebook/Cholera - Enzymes/September-October|September-October]] | ||
+ | |||
+ | : [[Team:BYU Provo/Notebook/Cholera - Enzymes/Protocols|Protocols]] | ||
</font> | </font> | ||
Line 36: | Line 38: | ||
<br> | <br> | ||
- | <font size="3" font face="Calibri"> | + | <font size="3" font face="Calibri"> |
+ | We continued to have issues with washing our biofilm during the biofilm assay without losing significant portions of the biofilm. We tried several different methods and found that the most consistent way to treat the biofilm during the assay is to pellet and resuspend the biofilm with each wash, allowing us to wash our sample without losing the biofilm itself. | ||
+ | </font> | ||
<br> | <br> | ||
<font color="#333399" size="4" font face="Calibri"> | <font color="#333399" size="4" font face="Calibri"> | ||
- | |||
[[Team:BYU_Provo/Notebook/Cholera - Enzyme/July-August/Period1/Dailylog|Daily log]] | [[Team:BYU_Provo/Notebook/Cholera - Enzyme/July-August/Period1/Dailylog|Daily log]] | ||
- | + | </font> | |
- | + | ||
- | + | ||
<br> | <br> | ||
- | | style="width: 20%; background-color: transparent;"| [[File: | + | | style="width: 20%; background-color: transparent;"| [[File:Winter2.JPG|250px|center]] |
|- | |- | ||
Line 60: | Line 61: | ||
<br> | <br> | ||
- | <font size="3" font face="Calibri"> | + | <font size="3" font face="Calibri"> We focused these two weeks on preparing our DspB and Savinase enzymes for protein purification so we could test them in our Biofilm Assay. We ran PCRs, restriction digests, ligations, and transformations on them.</font> |
<br> | <br> | ||
Line 68: | Line 69: | ||
[[Team:BYU_Provo/Notebook/Cholera - Enzyme/July-August/Period2/Dailylog|Daily log]] | [[Team:BYU_Provo/Notebook/Cholera - Enzyme/July-August/Period2/Dailylog|Daily log]] | ||
- | + | </font> | |
- | + | ||
- | + | ||
<br> | <br> | ||
- | | style="width: 20%; background-color: transparent;"| [[File: | + | | style="width: 20%; background-color: transparent;"| [[File:BYUCESummer3.JPG|250px|center|link=]] |
|- | |- | ||
Line 85: | Line 84: | ||
<br> | <br> | ||
- | <font size="3" font face="Calibri"> | + | <font size="3" font face="Calibri"> We checked the transformation products from our earlier work with colony PCR, but the transformations were unsuccessful. We worked this period on trying to get our ligations and transformations to work.</font> |
<br> | <br> | ||
Line 93: | Line 92: | ||
[[Team:BYU_Provo/Notebook/Cholera - Enzyme/July-August/Period3/Dailylog|Daily log]] | [[Team:BYU_Provo/Notebook/Cholera - Enzyme/July-August/Period3/Dailylog|Daily log]] | ||
- | + | </font> | |
- | + | ||
- | + | ||
<br> | <br> | ||
- | | style="width: 20%; background-color: transparent;"| [[File: | + | | style="width: 20%; background-color: transparent;"| [[File:BYU2013-CholeraGroup1.jpg|250px|center]] |
|- | |- | ||
Line 110: | Line 107: | ||
<br> | <br> | ||
- | <font size="3" font face="Calibri"> | + | <font size="3" font face="Calibri"> We continued working on getting DspB and Savinase ready for protein purification. We were having so many problems with Savinase that we went back and prepared new template DNA from ''Bacillus subtilis'' to use for our Savinase enzyme. </font> |
<br> | <br> | ||
Line 118: | Line 115: | ||
[[Team:BYU_Provo/Notebook/Cholera - Enzyme/July-August/Period4/Dailylog|Daily log]] | [[Team:BYU_Provo/Notebook/Cholera - Enzyme/July-August/Period4/Dailylog|Daily log]] | ||
- | + | </font> | |
- | + | ||
- | + | ||
<br> | <br> | ||
- | | style="width: 20%; background-color: transparent;"| [[File: | + | | style="width: 20%; background-color: transparent;"| [[File:Gelnotebook2013.jpg|250px|center]] |
Latest revision as of 21:07, 27 September 2013
| ||
|
July 1 - July 14
We continued to have issues with washing our biofilm during the biofilm assay without losing significant portions of the biofilm. We tried several different methods and found that the most consistent way to treat the biofilm during the assay is to pellet and resuspend the biofilm with each wash, allowing us to wash our sample without losing the biofilm itself.
| |
July 15 - July 31
We focused these two weeks on preparing our DspB and Savinase enzymes for protein purification so we could test them in our Biofilm Assay. We ran PCRs, restriction digests, ligations, and transformations on them.
| | |
August 1 - August 14
We checked the transformation products from our earlier work with colony PCR, but the transformations were unsuccessful. We worked this period on trying to get our ligations and transformations to work.
| ||
August 15 - August 31
We continued working on getting DspB and Savinase ready for protein purification. We were having so many problems with Savinase that we went back and prepared new template DNA from Bacillus subtilis to use for our Savinase enzyme.
|
|