Team:BYU Provo/Notebook/Cholera - Enzymes/Protocols

From 2013.igem.org

(Difference between revisions)
Line 46: Line 46:
To 950 ml distilled H2O add
To 950 ml distilled H2O add
-
24.00 g NaCl
+
*24.00 g NaCl
-
11.90 g MgCl2-6H2O
+
*11.90 g MgCl2-6H2O
-
02.00 g CaCl2-2H2O
+
*02.00 g CaCl2-2H2O
-
00.85 g KCl
+
*00.85 g KCl
-
Adjust pH to 7.8  
+
Adjust pH to 7.8 <br>
Add
Add
-
10.00 g Bacto-tryptone
+
*10.00 g Bacto-tryptone
-
05.00 g Yeast extract
+
*05.00 g Yeast extract
Fill to 1000 ml and autoclave
Fill to 1000 ml and autoclave
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For each sample add:
For each sample add:
-
35 ul ddH2O
+
*35 ul ddH2O
-
10 ul 5X Phusion buffer
+
*10 ul 5X Phusion buffer
-
1.5 ul 10mM dNTP's
+
*1.5 ul 10mM dNTP's
-
1 ul each Primer (50 uM stock)
+
*1 ul each Primer (50 uM stock)
-
1 ul appropriate diluted template DNA
+
*1 ul appropriate diluted template DNA
-
0.5 ul Phusion Polymerase
+
*0.5 ul Phusion Polymerase
Set the PCR machine to run the following cycle
Set the PCR machine to run the following cycle
-
98&deg;C for 02:00
+
*98&deg;C for 02:00
-
      98&deg;C for 00:30
+
*98&deg;C for 00:30
-
      65&deg;C for 00:30
+
*65&deg;C for 00:30
-
      72&deg;C for 04:00
+
*72&deg;C for 04:00
       X35
       X35
-
72&deg;C for 8:00
+
*72&deg;C for 8:00
Hold at 4&deg;C
Hold at 4&deg;C
   
   
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For each sample add:
For each sample add:
-
40 ul ddH2O
+
*40 ul ddH2O
-
5 ul 10X TAQ buffer
+
*5 ul 10X TAQ buffer
-
1.5 ul 10 mM dNTP's
+
*1.5 ul 10 mM dNTP's
-
1 ul each Primer (50 uM stock)
+
*1 ul each Primer (50 uM stock)
-
1 ul appropriate diluted template DNA
+
*1 ul appropriate diluted template DNA
-
0.5 ul ''TAQ'' Polymerase
+
*0.5 ul ''TAQ'' Polymerase
95 for 2
95 for 2
Line 101: Line 101:
<br>
<br>
-
Any deviations from these protocols are listed in the notebook when they were used.
+
===Any deviations from these protocols are listed in the notebook when they were used===

Revision as of 21:37, 27 September 2013


Cholera - Enzyme Laboratory Protocols



Cholera Enzyme
March-April
May-June
July-August
September-October
Protocols

Cholera-Enzyme Protocols



Salt LB recipe


To 950 ml distilled H2O add

  • 24.00 g NaCl
  • 11.90 g MgCl2-6H2O
  • 02.00 g CaCl2-2H2O
  • 00.85 g KCl

Adjust pH to 7.8
Add

  • 10.00 g Bacto-tryptone
  • 05.00 g Yeast extract

Fill to 1000 ml and autoclave


Phusion PCR (50ul reaction)


For each sample add:

  • 35 ul ddH2O
  • 10 ul 5X Phusion buffer
  • 1.5 ul 10mM dNTP's
  • 1 ul each Primer (50 uM stock)
  • 1 ul appropriate diluted template DNA
  • 0.5 ul Phusion Polymerase

Set the PCR machine to run the following cycle

  • 98°C for 02:00
  • 98°C for 00:30
  • 65°C for 00:30
  • 72°C for 04:00
     X35
  • 72°C for 8:00

Hold at 4°C


Taq polymerase PCR (50ul reaction)


For each sample add:

  • 40 ul ddH2O
  • 5 ul 10X TAQ buffer
  • 1.5 ul 10 mM dNTP's
  • 1 ul each Primer (50 uM stock)
  • 1 ul appropriate diluted template DNA
  • 0.5 ul TAQ Polymerase

95 for 2 95 for .5 50 for .5 72 for 1 72 for 1


===Any deviations from these protocols are listed in the notebook when they were used===