Team:UniSalento Lecce/Modeling

From 2013.igem.org

(Difference between revisions)
 
(3 intermediate revisions not shown)
Line 1: Line 1:
<html>
<html>
<head>
<head>
-
 
+
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
-
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
+
<link rel="stylesheet" href="https://2013.igem.org/Team:UniSalento_Lecce/css/common.css?action=raw&ctype=text/css" type="text/css" />
-
        <link rel="stylesheet" href="https://2013.igem.org/Team:UniSalento_Lecce/css/common.css?action=raw&ctype=text/css" type="text/css" />
+
<script src="https://2013.igem.org/Team:UniSalento_Lecce/js/go-to-top.js?action=raw&ctype=text/javascript"></script>
-
<script src="https://2013.igem.org/Team:UniSalento_Lecce/js/go-to-top.js?action=raw&ctype=text/javascript"></script>
+
<script src="https://2013.igem.org/Team:UniSalento_Lecce/js/fixed-navbar.js?action=raw&ctype=text/javascript"></script>
-
<script src="https://2013.igem.org/Team:UniSalento_Lecce/js/fixed-navbar.js?action=raw&ctype=text/javascript"></script>
+
<script type="text/javascript">
<script type="text/javascript">
-
    $(document).ready(function() {
+
$(document).ready(function() {
-
        $("p").filter( function() {
+
$("p").filter( function() {
-
            return $.trim($(this).html()) == '';
+
return $.trim($(this).html()) == '';
-
        }).remove()
+
}).remove()
-
    });
+
});
</script>
</script>
-
 
</head>
</head>
<body>
<body>
<!-- ****************** Start Header *********************** -->
<!-- ****************** Start Header *********************** -->
<header>
<header>
-
        <img src="https://static.igem.org/mediawiki/2013/0/0b/Unisalento_logo_team.png" height="110px" style="position: absolute; left:37px; top:105px">
+
<img src="https://static.igem.org/mediawiki/2013/0/0b/Unisalento_logo_team.png" height="110px" style="position: absolute; left:37px; top:105px">
-
<img src="https://static.igem.org/mediawiki/igem.org/f/f7/New1.png" height="220px">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce" style="background: none">
-
<a href="https://www.unisalento.it" style="background: none"><img src="https://static.igem.org/mediawiki/2013/c/c7/Unisalento_logo_university.png" height="85px" style="position: absolute; right:40px; top:125px"></a>
+
<img src="https://static.igem.org/mediawiki/2013/a/a5/Unisalento_logo_project.png" width="450px" style="margin-top:0px;margin-left:0px">
 +
</a>
 +
<a href="http://www.igem.org" style="background: none">
 +
<img src="https://static.igem.org/mediawiki/2013/b/b0/Unisalento_Igem_official.png" height="75px" style="position: absolute; right:40px; top:15px">
 +
</a>
 +
<a href="https://www.unisalento.it" style="background: none">
 +
<img src="https://static.igem.org/mediawiki/2013/c/c7/Unisalento_logo_university.png" height="85px" style="position: absolute; right:40px; top:125px">
 +
</a>
</header>
</header>
<!-- ****************** End Header ************************* -->
<!-- ****************** End Header ************************* -->
<!-- ****************** Start Navigation Bar ************************* -->
<!-- ****************** Start Navigation Bar ************************* -->
<nav>
<nav>
-
<ul id="css3menu1" class="topmenu">
+
<ul id="css3menu1" class="topmenu">
-
<li class="topmenu">
+
<li class="topmenu">
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce" title="Home" style="height:24px;line-height:24px;">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce" title="Home" style="height:24px;line-height:24px;">
-
<img src="https://static.igem.org/mediawiki/2013/b/bc/Unisalento_home.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/b/bc/Unisalento_home.png" alt="">
-
Home
+
Home
-
</a>
+
</a>
-
</li>
+
</li>
-
<li class="toproot">
+
<li class="toproot">
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Team" title="Team" style="height:24px;line-height:24px;">
+
<a href="#" title="Team" style="height:24px;line-height:24px;">
-
<img src="https://static.igem.org/mediawiki/2013/5/50/Unisalento_users.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/5/50/Unisalento_users.png" alt="">
-
Team
+
Team
-
</a>
+
</a>
-
<div class="submenu" style="width:230px">
+
<div class="submenu" style="width:230px">
-
<div class="column" style="width:100%">
+
<div class="column" style="width:100%">
-
<ul>
+
<ul>
-
<li>
+
<li>
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Team" title="Team">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Team" title="Team">
-
<img src="https://static.igem.org/mediawiki/2013/1/12/Unisalento_user1.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/1/12/Unisalento_user1.png" alt="">
-
Team
+
Team
-
</a>
+
</a>
-
</li>
+
</li>
-
<li>
+
<li>
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/University" title="University/Department">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce/University" title="University/Department">
-
<img src="https://static.igem.org/mediawiki/2013/c/c3/Unisalento_university.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/c/c3/Unisalento_university.png" alt="">
-
University/Department
+
University/Department
-
</a>
+
</a>
-
</li>
+
</li>
-
</ul>
+
</ul>
-
</div>
+
</div>
-
</div>
+
</div>
-
</li>
+
</li>
-
<li class="toproot">
+
<li class="toproot">
-
<a href="#" title="Project" style="height:24px;line-height:24px;">
+
<a href="#" title="Project" style="height:24px;line-height:24px;">
-
<span>
+
<span>
-
<img src="https://static.igem.org/mediawiki/2013/f/f2/Unisalento_project.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/f/f2/Unisalento_project.png" alt="">
-
Project
+
Project
-
</span>
+
</span>
-
</a>
+
</a>
-
<div class="submenu" style="width:250px">
+
<div class="submenu" style="width:250px">
-
<div class="column" style="width:100%">
+
<div class="column" style="width:100%">
-
<ul>
+
<ul>
-
<li>
+
<li>
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Overview" title="Why? ... An overview">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Overview" title="Why NickBusters?">
-
<img src="https://static.igem.org/mediawiki/2013/7/79/Unisalento_question.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/7/79/Unisalento_question.png" alt="">
-
Why? ... An overview
+
Why NickBusters?
-
</a>
+
</a>
-
</li>
+
</li>
-
<li>
+
<li>
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Data" title="Experimentals data and results">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Data" title="Experimental data and results">
-
<img src="https://static.igem.org/mediawiki/2013/c/c9/Unisalento_chart.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/c/c9/Unisalento_chart.png" alt="">
-
Experimental data and results
+
Experimental data and results
-
</a>
+
</a>
-
</li>
+
</li>
-
<li>
+
<li>
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Parts" title="Biobricks and parts">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Parts" title="Biobricks and parts">
-
<img src="https://static.igem.org/mediawiki/2013/3/36/Unisalento_lego.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/3/36/Unisalento_lego.png" alt="">
-
Biobricks and parts
+
Biobricks and parts
-
</a>
+
</a>
-
</li>
+
</li>
-
<li>
+
<li>
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Applications" title="Biobricks and parts">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Applications" title="Applications">
-
<img src="https://static.igem.org/mediawiki/2013/6/6e/Unisalento_applications.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/6/6e/Unisalento_applications.png" alt="">
-
Applications
+
Applications
-
</a>
+
</a>
-
</li>
+
</li>
-
</ul>
+
</ul>
-
</div>
+
</div>
-
</div>
+
</div>
-
</li>
+
</li>
-
<li class="topmenu">
+
<li class="topmenu">
-
<a href="#" title="Model" style="height:24px;line-height:24px;">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Human_Practices" title="Human practices" style="height:24px;line-height:24px;">
-
<span>
+
<span>
-
<img src="https://static.igem.org/mediawiki/2013/9/9d/Unisalento_model.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/6/6b/Unisalento_world.png" alt="">
-
Model
+
Human practices
-
</span>
+
</span>
-
</a>
+
</a>
-
</li>
+
</li>
-
<li class="toproot">
+
<li class="toproot">
-
<a href="#" title="Nootebook" style="height:24px;line-height:24px;">
+
<a href="#" title="Nootebook" style="height:24px;line-height:24px;">
-
<span>
+
<span>
-
<img src="https://static.igem.org/mediawiki/2013/2/2d/Unisalento_notes.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/2/2d/Unisalento_notes.png" alt="">
-
Notebook
+
Notebook
-
</span>
+
</span>
-
</a>
+
</a>
-
<div class="submenu" style="width:200px;">
+
<div class="submenu" style="width:200px;">
-
<div class="column" style="width:100%">
+
<div class="column" style="width:100%">
-
<ul>
+
<ul>
-
<li>
+
<li>
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Notebook" title="Weekly Journal">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Notebook" title="Weekly Journal">
-
<img src="https://static.igem.org/mediawiki/2013/3/34/Unisalento_date.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/3/34/Unisalento_date.png" alt="">
-
Weekly Journal
+
Weekly Journal
-
</a>
+
</a>
-
</li>
+
</li>
-
<li>
+
<li>
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Protocols" title="Protocols">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Protocols" title="Protocols">
-
<img src="https://static.igem.org/mediawiki/2013/c/c5/Unisalento_db.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/c/c5/Unisalento_db.png" alt="">
-
Protocols
+
Protocols
-
</a>
+
</a>
-
</li>
+
</li>
-
</ul>
+
</ul>
-
</div>
+
</div>
-
</div>
+
</div>
-
</li>
+
</li>
-
<li class="topmenu">
+
<li class="topmenu">
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Safety" title="Safety" style="height:24px;line-height:24px;">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Safety" title="Safety" style="height:24px;line-height:24px;">
-
<span>
+
<span>
-
<img src="https://static.igem.org/mediawiki/2013/5/5e/Unisalento_safety.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/5/5e/Unisalento_safety.png" alt="">
-
Safety
+
Safety
-
</span>
+
</span>
-
</a>
+
</a>
-
</li>
+
</li>
-
<li class="toproot">
+
<li class="toproot">
-
<a href="#" title="Extra" style="height:24px;line-height:24px;">
+
<a href="#" title="Extra" style="height:24px;line-height:24px;">
-
<img src="https://static.igem.org/mediawiki/2013/3/32/Unisalento_star.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/3/32/Unisalento_star.png" alt="">
-
Extra
+
Extra
-
</a>
+
</a>
-
<div class="submenu" style="width:220px;">
+
<div class="submenu" style="width:220px;">
-
<div class="column" style="width:100%">
+
<div class="column" style="width:100%">
-
<ul>
+
<ul>
-
<li>
+
<li>
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Human_Practices" title="Human practices">
+
<a href="#" title="Model">
-
<img src="https://static.igem.org/mediawiki/2013/6/6b/Unisalento_world.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/9/9d/Unisalento_model.png" alt="">
-
Human practices
+
Model
-
</a>
+
</a>
-
</li>
+
</li>
-
<li>
+
<li>
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Sponsors" title="Sposors">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Sponsors" title="Sposors">
-
<img src="https://static.igem.org/mediawiki/2013/f/f7/Unisalento_flag.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/f/f7/Unisalento_flag.png" alt="">
-
Sponsors
+
Sponsors
-
</a>
+
</a>
-
</li>
+
</li>
-
<li>
+
<li>
-
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Attributions" title="Acknowledgments">
+
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Attributions" title="Acknowledgments">
-
<img src="https://static.igem.org/mediawiki/2013/e/e9/Unisalento_search.png" alt="">
+
<img src="https://static.igem.org/mediawiki/2013/e/e9/Unisalento_search.png" alt="">
-
Acknowledgments
+
Acknowledgments
-
</a>
+
</a>
-
</li>
+
</li>
-
</ul>
+
</ul>
-
</div>
+
</div>
-
</div>
+
</div>
-
</li>
+
</li>
-
</ul>
+
</ul>
-
<!-- ****************** Start Social Links ************************ -->
+
<!-- ****************** Start Social Links ************************ -->
-
<div id="social_facebook"><a href="https://www.facebook.com/IgemUnisalento2013" style="background: none"><img src="https://static.igem.org/mediawiki/2013/f/f3/Unisalento_facebook.png" alt="" height="50px"></a></div>
+
<div id="social_facebook"><a href="https://www.facebook.com/IgemUnisalento2013" style="background: none"><img src="https://static.igem.org/mediawiki/2013/f/f3/Unisalento_facebook.png" alt="" height="50px"></a></div>
-
<div id="social_twitter"><a href="https://www.twitter.com/iGEM_UniSalento" style="background: none"><img src="https://static.igem.org/mediawiki/2013/7/7d/Unisalento_twitter.png" alt="" height="50px"></a></div>
+
<div id="social_twitter"><a href="https://www.twitter.com/iGEM_UniSalento" style="background: none"><img src="https://static.igem.org/mediawiki/2013/7/7d/Unisalento_twitter.png" alt="" height="50px"></a></div>
-
<div id="social_gmail"><a href="http://www.google.com"><img src="https://static.igem.org/mediawiki/2013/d/d3/Unisalento_gmail.png" alt="" height="50px"></a></div>
+
<div id="social_gmail"><a href="https://plus.google.com/u/0/108724165022727316894" style="background: none"><img src="https://static.igem.org/mediawiki/2013/d/d3/Unisalento_gmail.png" alt="" height="50px"></a></div>
-
<div class="clear"></div>
+
<div class="clear"></div>
-
<!-- ******************* End Social Links ************************* -->
+
<!-- ******************* End Social Links ************************* -->
</nav>
</nav>
<!-- ****************** End Navigation Bar ************************* -->
<!-- ****************** End Navigation Bar ************************* -->
-
<!-- *************************************************************************************************** -->
+
<!-- *************************************************************************************************** -->
<!-- ********************************************** Start Main **************************************************** -->
<!-- ********************************************** Start Main **************************************************** -->
<div id="main">
<div id="main">
-
<div id="main_wrap">
+
<div id="main_wrap">
-
<div id="container">
+
<div id="container">
-
<div class="nosplit">
+
<div class="nosplit">
-
+
<!-- *************************************************************************************************** -->
-
                    <!-- *************************************************************************************************** -->
+
<h2 style="text-align: center">Modeling</h2>
-
<div class="nosplit">
+
<p>
-
<h2 style="text-align: center">Modeling</h2>
+
Mathematical modeling is an indispensable component of synthetic biology, that allows to test the feasibility of new lab made biological systems, to save time on trials and errors. Our team tried to structure a model on MATLAB SynBiology software on the overall operation of the project. We afforded great difficulties to define the kinetic constants of the majority of the parts because a lot of them are not present in bibliography and need a long laboratory work to be defined.
-
<p>
+
</p>
-
Mathematical modeling is an indispensable component of synthetic biology, that allows to test the feasibility of new lab made biological systems, to save time on trials and errors. Our team tried to structure a model on MATLAB SynBiology software on the overall operation of the project. We afforded great difficulties to define the kinetic constants of the majority of the parts because a lot of them are not present in bibliography and need a long laboratory work to be defined.
+
-
</p>
+
<img style="margin-left:10px" src="https://static.igem.org/mediawiki/2013/2/2d/View_martina_ludovica_UniSalento_model.jpg" alt="" width="100%">
<img style="margin-left:10px" src="https://static.igem.org/mediawiki/2013/2/2d/View_martina_ludovica_UniSalento_model.jpg" alt="" width="100%">
-
<br/>
+
<br/>
-
<br/>
+
<br/>
-
 
+
<p>
-
Here you can find a PDF file containing the <a href="https://static.igem.org/mediawiki/2013/6/66/Script_UniSalento_Lecce.pdf">SCRIPT</a> to be run in SynBiology.
+
Here you can find a PDF file containing the <a href="https://static.igem.org/mediawiki/2013/6/66/Script_UniSalento_Lecce.pdf">SCRIPT</a> to be run in SynBiology.
-
+
</p>
-
</div>
+
</div>
-
</div>
+
</div>
-
                <div class="clear"></div>
+
</div>
-
</div>
+
</div>
</div>
<div class="clear"></div>
<div class="clear"></div>
<!-- ********************* Start Footer *********************************** -->
<!-- ********************* Start Footer *********************************** -->
-
<footer></footer>
+
<footer>
 +
<div id="main_wrap">
 +
<div class="split2_3r" style="width:50%;text-align:right;padding-right:50px">
 +
<img src="https://static.igem.org/mediawiki/2013/f/f9/Unisalento_igem_official.png" width="200px" align="left" style="margin-top:20px;margin-left:-45px">
 +
<h2 style="margin-right:70px;color:#cccccc">Sponsors</h2>
 +
<table style="float:right;background-color:transparent">
 +
<tr>
 +
<td><a href="http://www.mps.it/" style="background: none"><img src="https://static.igem.org/mediawiki/2013/5/56/Unisalento_sponsor_mps_small.png" width="45px" align="center"/></a></td>
 +
<td><a href="http://www.mathworks.it/" style="background: none"><img src="https://static.igem.org/mediawiki/2013/1/1f/Unisalento_sponsor_mathworks_small.png" width="45px" align="center"/></a></td>
 +
<td><a href="http://www.unisalentostore.it/" style="background: none"><img src="https://static.igem.org/mediawiki/2013/4/41/Unisalento_sponsor_unisalentostore_small.png" height="45px" align="right"/></a></td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://www.idt.com/" style="background: none"><img src="https://static.igem.org/mediawiki/2013/f/f4/Unisalento_sponsor_idt_small.png" width="45px" align="center"/></a></td>
 +
<td><a href="https://www.neb.com/" style="background: none"><img src="https://static.igem.org/mediawiki/2013/2/25/Unisalento_sponsor_neb_small.png" height="45px" align="center"/></a></td>
 +
<td><a href="http://www.dasitsciences.it/" style="background: none"><img src="https://static.igem.org/mediawiki/2013/4/44/Unisalento_sponsor_dasit_small.png" width="45px" align="right"/></a></td>
 +
</tr>
 +
</table>
 +
</div>
 +
<div class="split2l" style="width:30%;text-align:left;margin-left:50px">
 +
<h2 style="margin-left:40px;color:#cccccc">Contacts</h2>
 +
<table style="float:left;background-color:transparent">
 +
<tr>
 +
<td><a href="https://www.facebook.com/IgemUnisalento2013" style="background: none"><img src="https://static.igem.org/mediawiki/2013/a/ac/Unisalento_facebook_small.png" width="35px" align="left"/></a></td>
 +
<td><font style="font-size:15px;color:#cccccc">Facebook</font></td>
 +
</tr>
 +
<tr>
 +
<td><a href="https://www.twitter.com/iGEM_UniSalento" style="background: none"><img src="https://static.igem.org/mediawiki/2013/b/b7/Unisalento_twitter_small.png" width="35px" align="left"/></a></td>
 +
<td><font style="font-size:15px;color:#cccccc">Twitter</font></td>
 +
</tr>
 +
<tr>
 +
<td><a href="https://plus.google.com/u/0/108724165022727316894" style="background: none"><img src="https://static.igem.org/mediawiki/2013/d/d7/Unisalento_google_small.png" width="35px" align="left"/></a></td>
 +
<td><font style="font-size:15px;color:#cccccc">Google+</font></td>
 +
</tr>
 +
</table>
 +
<br><br><br><br>
 +
<p style="margin-top:20px">
 +
<font style="font-size:15px">
 +
E-mail:
 +
</font>
 +
<a href="mailto:igem.unisalento@gmail.com" style="color:#cccccc;background:none;font-size: 15px">
 +
igem.unisalento@gmail.com
 +
</a>
 +
<br>
 +
</p>
 +
</div>
 +
<div class="clear"></div>
 +
<div class="nosplit">
 +
<p style="text-align:center;color:#cccccc">
 +
<br><br>Design by Mattia Corvaglia - <a href="http://www.mattiacorvaglia.com" style="color:#cccccc">www.mattiacorvaglia.com</a> - Visitors:
 +
<!-- hitwebcounter Code START -->
 +
<a href="http://www.hitwebcounter.com/" target="_blank">
 +
<img src="http://hitwebcounter.com/counter/counter.php?page=5095130&style=0008&nbdigits=5&type=page&initCount=0" title="URLS counter" Alt="URLS counter" border="0" >
 +
</a><br/>
 +
<!--<a href="http://www.hitwebcounter.com/" title="Free Counters" target="_blank" style="font-family: sans-serif, Arial, Helvetica; font-size: 9px; color: #9F9F97; text-decoration: none ;">
 +
<strong>Free Counters</strong>
 +
</a>-->
 +
</p>
 +
</div>
 +
</div>
 +
</footer>
<!-- ********************* End Footer ************************************* -->
<!-- ********************* End Footer ************************************* -->
<!-- ********************* Start Button "Back-to-top" *********************************** -->
<!-- ********************* Start Button "Back-to-top" *********************************** -->
<p id="back-top">
<p id="back-top">
-
<a href="#top"><span></span>Back to Top</a>
+
<a href="#top"><span></span>Back to Top</a>
</p>
</p>
<!-- ********************* End Button "Back-to-top" *********************************** -->
<!-- ********************* End Button "Back-to-top" *********************************** -->
</body>
</body>
</html>
</html>

Latest revision as of 13:58, 4 October 2013

Modeling

Mathematical modeling is an indispensable component of synthetic biology, that allows to test the feasibility of new lab made biological systems, to save time on trials and errors. Our team tried to structure a model on MATLAB SynBiology software on the overall operation of the project. We afforded great difficulties to define the kinetic constants of the majority of the parts because a lot of them are not present in bibliography and need a long laboratory work to be defined.



Here you can find a PDF file containing the SCRIPT to be run in SynBiology.

Back to Top