Team:UniSalento Lecce/Modeling

From 2013.igem.org

(Difference between revisions)
(Prototype team page)
 
(14 intermediate revisions not shown)
Line 1: Line 1:
-
<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
 
-
 
<html>
<html>
-
<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #000; background-color: #fe2b33;">
+
<head>
-
<div id="template" style="text-align: center; font-weight: bold; font-size: large; color: #f6f6f6; padding: 5px;">
+
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
-
This is a template page. READ THESE INSTRUCTIONS.
+
<link rel="stylesheet" href="https://2013.igem.org/Team:UniSalento_Lecce/css/common.css?action=raw&ctype=text/css" type="text/css" />
 +
<script src="https://2013.igem.org/Team:UniSalento_Lecce/js/go-to-top.js?action=raw&ctype=text/javascript"></script>
 +
<script src="https://2013.igem.org/Team:UniSalento_Lecce/js/fixed-navbar.js?action=raw&ctype=text/javascript"></script>
 +
<script type="text/javascript">
 +
$(document).ready(function() {
 +
$("p").filter( function() {
 +
return $.trim($(this).html()) == '';
 +
}).remove()
 +
});
 +
</script>
 +
</head>
 +
<body>
 +
<!-- ****************** Start Header *********************** -->
 +
<header>
 +
<img src="https://static.igem.org/mediawiki/2013/0/0b/Unisalento_logo_team.png" height="110px" style="position: absolute; left:37px; top:105px">
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce" style="background: none">
 +
<img src="https://static.igem.org/mediawiki/2013/a/a5/Unisalento_logo_project.png" width="450px" style="margin-top:0px;margin-left:0px">
 +
</a>
 +
<a href="http://www.igem.org" style="background: none">
 +
<img src="https://static.igem.org/mediawiki/2013/b/b0/Unisalento_Igem_official.png" height="75px" style="position: absolute; right:40px; top:15px">
 +
</a>
 +
<a href="https://www.unisalento.it" style="background: none">
 +
<img src="https://static.igem.org/mediawiki/2013/c/c7/Unisalento_logo_university.png" height="85px" style="position: absolute; right:40px; top:125px">
 +
</a>
 +
</header>
 +
<!-- ****************** End Header ************************* -->
 +
<!-- ****************** Start Navigation Bar ************************* -->
 +
<nav>
 +
<ul id="css3menu1" class="topmenu">
 +
<li class="topmenu">
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce" title="Home" style="height:24px;line-height:24px;">
 +
<img src="https://static.igem.org/mediawiki/2013/b/bc/Unisalento_home.png" alt="">
 +
Home
 +
</a>
 +
</li>
 +
<li class="toproot">
 +
<a href="#" title="Team" style="height:24px;line-height:24px;">
 +
<img src="https://static.igem.org/mediawiki/2013/5/50/Unisalento_users.png" alt="">
 +
Team
 +
</a>
 +
<div class="submenu" style="width:230px">
 +
<div class="column" style="width:100%">
 +
<ul>
 +
<li>
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Team" title="Team">
 +
<img src="https://static.igem.org/mediawiki/2013/1/12/Unisalento_user1.png" alt="">
 +
Team
 +
</a>
 +
</li>
 +
<li>
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce/University" title="University/Department">
 +
<img src="https://static.igem.org/mediawiki/2013/c/c3/Unisalento_university.png" alt="">
 +
University/Department
 +
</a>
 +
</li>
 +
</ul>
</div>
</div>
-
<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; color: #f6f6f6; padding: 5px;">
 
-
You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2008.igem.org/Help:Template/Examples">HERE</a>.
 
</div>
</div>
-
<div id="warning" style="text-align: center; font-weight: bold; font-size: small; color: #f6f6f6; padding: 5px;">
+
</li>
-
You <strong>MUST</strong> have all of the pages listed in the menu below with the names specified. PLEASE keep all of your pages within your teams namespace.
+
<li class="toproot">
 +
<a href="#" title="Project" style="height:24px;line-height:24px;">
 +
<span>
 +
<img src="https://static.igem.org/mediawiki/2013/f/f2/Unisalento_project.png" alt="">
 +
Project
 +
</span>
 +
</a>
 +
<div class="submenu" style="width:250px">
 +
<div class="column" style="width:100%">
 +
<ul>
 +
<li>
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Overview" title="Why NickBusters?">
 +
<img src="https://static.igem.org/mediawiki/2013/7/79/Unisalento_question.png" alt="">
 +
Why NickBusters?
 +
</a>
 +
</li>
 +
<li>
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Data" title="Experimental data and results">
 +
<img src="https://static.igem.org/mediawiki/2013/c/c9/Unisalento_chart.png" alt="">
 +
Experimental data and results
 +
</a>
 +
</li>
 +
<li>
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Parts" title="Biobricks and parts">
 +
<img src="https://static.igem.org/mediawiki/2013/3/36/Unisalento_lego.png" alt="">
 +
Biobricks and parts
 +
</a>
 +
</li>
 +
<li>
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Applications" title="Applications">
 +
<img src="https://static.igem.org/mediawiki/2013/6/6e/Unisalento_applications.png" alt="">
 +
Applications
 +
</a>
 +
</li>
 +
</ul>
</div>
</div>
</div>
</div>
 +
</li>
 +
<li class="topmenu">
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Human_Practices" title="Human practices" style="height:24px;line-height:24px;">
 +
<span>
 +
<img src="https://static.igem.org/mediawiki/2013/6/6b/Unisalento_world.png" alt="">
 +
Human practices
 +
</span>
 +
</a>
 +
</li>
 +
<li class="toproot">
 +
<a href="#" title="Nootebook" style="height:24px;line-height:24px;">
 +
<span>
 +
<img src="https://static.igem.org/mediawiki/2013/2/2d/Unisalento_notes.png" alt="">
 +
Notebook
 +
</span>
 +
</a>
 +
<div class="submenu" style="width:200px;">
 +
<div class="column" style="width:100%">
 +
<ul>
 +
<li>
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Notebook" title="Weekly Journal">
 +
<img src="https://static.igem.org/mediawiki/2013/3/34/Unisalento_date.png" alt="">
 +
Weekly Journal
 +
</a>
 +
</li>
 +
<li>
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Protocols" title="Protocols">
 +
<img src="https://static.igem.org/mediawiki/2013/c/c5/Unisalento_db.png" alt="">
 +
Protocols
 +
</a>
 +
</li>
 +
</ul>
 +
</div>
 +
</div>
 +
</li>
 +
<li class="topmenu">
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Safety" title="Safety" style="height:24px;line-height:24px;">
 +
<span>
 +
<img src="https://static.igem.org/mediawiki/2013/5/5e/Unisalento_safety.png" alt="">
 +
Safety
 +
</span>
 +
</a>
 +
</li>
 +
<li class="toproot">
 +
<a href="#" title="Extra" style="height:24px;line-height:24px;">
 +
<img src="https://static.igem.org/mediawiki/2013/3/32/Unisalento_star.png" alt="">
 +
Extra
 +
</a>
 +
<div class="submenu" style="width:220px;">
 +
<div class="column" style="width:100%">
 +
<ul>
 +
<li>
 +
<a href="#" title="Model">
 +
<img src="https://static.igem.org/mediawiki/2013/9/9d/Unisalento_model.png" alt="">
 +
Model
 +
</a>
 +
</li>
 +
<li>
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Sponsors" title="Sposors">
 +
<img src="https://static.igem.org/mediawiki/2013/f/f7/Unisalento_flag.png" alt="">
 +
Sponsors
 +
</a>
 +
</li>
 +
<li>
 +
<a href="https://2013.igem.org/Team:UniSalento_Lecce/Attributions" title="Acknowledgments">
 +
<img src="https://static.igem.org/mediawiki/2013/e/e9/Unisalento_search.png" alt="">
 +
Acknowledgments
 +
</a>
 +
</li>
 +
</ul>
 +
</div>
 +
</div>
 +
</li>
 +
</ul>
 +
<!-- ****************** Start Social Links ************************ -->
 +
<div id="social_facebook"><a href="https://www.facebook.com/IgemUnisalento2013" style="background: none"><img src="https://static.igem.org/mediawiki/2013/f/f3/Unisalento_facebook.png" alt="" height="50px"></a></div>
 +
<div id="social_twitter"><a href="https://www.twitter.com/iGEM_UniSalento" style="background: none"><img src="https://static.igem.org/mediawiki/2013/7/7d/Unisalento_twitter.png" alt="" height="50px"></a></div>
 +
<div id="social_gmail"><a href="https://plus.google.com/u/0/108724165022727316894" style="background: none"><img src="https://static.igem.org/mediawiki/2013/d/d3/Unisalento_gmail.png" alt="" height="50px"></a></div>
 +
<div class="clear"></div>
 +
<!-- ******************* End Social Links ************************* -->
 +
</nav>
 +
<!-- ****************** End Navigation Bar ************************* -->
 +
<!-- *************************************************************************************************** -->
 +
<!-- ********************************************** Start Main **************************************************** -->
 +
<div id="main">
 +
<div id="main_wrap">
 +
<div id="container">
 +
<div class="nosplit">
 +
<!-- *************************************************************************************************** -->
 +
<h2 style="text-align: center">Modeling</h2>
 +
<p>
 +
Mathematical modeling is an indispensable component of synthetic biology, that allows to test the feasibility of new lab made biological systems, to save time on trials and errors. Our team tried to structure a model on MATLAB SynBiology software on the overall operation of the project. We afforded great difficulties to define the kinetic constants of the majority of the parts because a lot of them are not present in bibliography and need a long laboratory work to be defined.
 +
</p>
 +
<img style="margin-left:10px" src="https://static.igem.org/mediawiki/2013/2/2d/View_martina_ludovica_UniSalento_model.jpg" alt="" width="100%">
 +
<br/>
 +
<br/>
 +
<p>
 +
Here you can find a PDF file containing the <a href="https://static.igem.org/mediawiki/2013/6/66/Script_UniSalento_Lecce.pdf">SCRIPT</a> to be run in SynBiology.
 +
</p>
 +
</div>
 +
</div>
 +
</div>
 +
</div>
 +
<div class="clear"></div>
 +
<!-- ********************* Start Footer *********************************** -->
 +
<footer>
 +
<div id="main_wrap">
 +
<div class="split2_3r" style="width:50%;text-align:right;padding-right:50px">
 +
<img src="https://static.igem.org/mediawiki/2013/f/f9/Unisalento_igem_official.png" width="200px" align="left" style="margin-top:20px;margin-left:-45px">
 +
<h2 style="margin-right:70px;color:#cccccc">Sponsors</h2>
 +
<table style="float:right;background-color:transparent">
 +
<tr>
 +
<td><a href="http://www.mps.it/" style="background: none"><img src="https://static.igem.org/mediawiki/2013/5/56/Unisalento_sponsor_mps_small.png" width="45px" align="center"/></a></td>
 +
<td><a href="http://www.mathworks.it/" style="background: none"><img src="https://static.igem.org/mediawiki/2013/1/1f/Unisalento_sponsor_mathworks_small.png" width="45px" align="center"/></a></td>
 +
<td><a href="http://www.unisalentostore.it/" style="background: none"><img src="https://static.igem.org/mediawiki/2013/4/41/Unisalento_sponsor_unisalentostore_small.png" height="45px" align="right"/></a></td>
 +
</tr>
 +
<tr>
 +
<td><a href="http://www.idt.com/" style="background: none"><img src="https://static.igem.org/mediawiki/2013/f/f4/Unisalento_sponsor_idt_small.png" width="45px" align="center"/></a></td>
 +
<td><a href="https://www.neb.com/" style="background: none"><img src="https://static.igem.org/mediawiki/2013/2/25/Unisalento_sponsor_neb_small.png" height="45px" align="center"/></a></td>
 +
<td><a href="http://www.dasitsciences.it/" style="background: none"><img src="https://static.igem.org/mediawiki/2013/4/44/Unisalento_sponsor_dasit_small.png" width="45px" align="right"/></a></td>
 +
</tr>
 +
</table>
 +
</div>
 +
<div class="split2l" style="width:30%;text-align:left;margin-left:50px">
 +
<h2 style="margin-left:40px;color:#cccccc">Contacts</h2>
 +
<table style="float:left;background-color:transparent">
 +
<tr>
 +
<td><a href="https://www.facebook.com/IgemUnisalento2013" style="background: none"><img src="https://static.igem.org/mediawiki/2013/a/ac/Unisalento_facebook_small.png" width="35px" align="left"/></a></td>
 +
<td><font style="font-size:15px;color:#cccccc">Facebook</font></td>
 +
</tr>
 +
<tr>
 +
<td><a href="https://www.twitter.com/iGEM_UniSalento" style="background: none"><img src="https://static.igem.org/mediawiki/2013/b/b7/Unisalento_twitter_small.png" width="35px" align="left"/></a></td>
 +
<td><font style="font-size:15px;color:#cccccc">Twitter</font></td>
 +
</tr>
 +
<tr>
 +
<td><a href="https://plus.google.com/u/0/108724165022727316894" style="background: none"><img src="https://static.igem.org/mediawiki/2013/d/d7/Unisalento_google_small.png" width="35px" align="left"/></a></td>
 +
<td><font style="font-size:15px;color:#cccccc">Google+</font></td>
 +
</tr>
 +
</table>
 +
<br><br><br><br>
 +
<p style="margin-top:20px">
 +
<font style="font-size:15px">
 +
E-mail:
 +
</font>
 +
<a href="mailto:igem.unisalento@gmail.com" style="color:#cccccc;background:none;font-size: 15px">
 +
igem.unisalento@gmail.com
 +
</a>
 +
<br>
 +
</p>
 +
</div>
 +
<div class="clear"></div>
 +
<div class="nosplit">
 +
<p style="text-align:center;color:#cccccc">
 +
<br><br>Design by Mattia Corvaglia - <a href="http://www.mattiacorvaglia.com" style="color:#cccccc">www.mattiacorvaglia.com</a> - Visitors:
 +
<!-- hitwebcounter Code START -->
 +
<a href="http://www.hitwebcounter.com/" target="_blank">
 +
<img src="http://hitwebcounter.com/counter/counter.php?page=5095130&style=0008&nbdigits=5&type=page&initCount=0" title="URLS counter" Alt="URLS counter" border="0" >
 +
</a><br/>
 +
<!--<a href="http://www.hitwebcounter.com/" title="Free Counters" target="_blank" style="font-family: sans-serif, Arial, Helvetica; font-size: 9px; color: #9F9F97; text-decoration: none ;">
 +
<strong>Free Counters</strong>
 +
</a>-->
 +
</p>
 +
</div>
 +
</div>
 +
</footer>
 +
<!-- ********************* End Footer ************************************* -->
 +
<!-- ********************* Start Button "Back-to-top" *********************************** -->
 +
<p id="back-top">
 +
<a href="#top"><span></span>Back to Top</a>
 +
</p>
 +
<!-- ********************* End Button "Back-to-top" *********************************** -->
 +
</body>
</html>
</html>
-
 
-
<!-- *** End of the alert box *** -->
 
-
 
-
 
-
{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
 
-
!align="center"|[[Team:UniSalento_Lecce|Home]]
 
-
!align="center"|[[Team:UniSalento_Lecce/Team|Team]]
 
-
!align="center"|[https://igem.org/Team.cgi?year=2013&team_name=UniSalento_Lecce Official Team Profile]
 
-
!align="center"|[[Team:UniSalento_Lecce/Project|Project]]
 
-
!align="center"|[[Team:UniSalento_Lecce/Parts|Parts Submitted to the Registry]]
 
-
!align="center"|[[Team:UniSalento_Lecce/Modeling|Modeling]]
 
-
!align="center"|[[Team:UniSalento_Lecce/Notebook|Notebook]]
 
-
!align="center"|[[Team:UniSalento_Lecce/Safety|Safety]]
 
-
!align="center"|[[Team:UniSalento_Lecce/Attributions|Attributions]]
 
-
|}
 
-
 
-
 
-
If you choose to include a '''Modeling''' page, please write about your modeling adventures here.  This is not necessary but it may be a nice list to include.
 

Latest revision as of 13:58, 4 October 2013

Modeling

Mathematical modeling is an indispensable component of synthetic biology, that allows to test the feasibility of new lab made biological systems, to save time on trials and errors. Our team tried to structure a model on MATLAB SynBiology software on the overall operation of the project. We afforded great difficulties to define the kinetic constants of the majority of the parts because a lot of them are not present in bibliography and need a long laboratory work to be defined.



Here you can find a PDF file containing the SCRIPT to be run in SynBiology.

Back to Top

Retrieved from "http://2013.igem.org/Team:UniSalento_Lecce/Modeling"