Team:Evry/Modeltr1

From 2013.igem.org

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<th>Name</th>
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<td><b>α</b></td>
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<th>Unit</th>
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<th>Description</th>
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<td>alpha</td>
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<td>s-1</td>
<td>s-1</td>
<td>Duodenum absorption rate</td>
<td>Duodenum absorption rate</td>
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<td>v</td>
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<td><b>v</b></td>
<td>m/s</td>
<td>m/s</td>
<td>Chyme's flow average speed</td>
<td>Chyme's flow average speed</td>
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<td>L</td>
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<td><b>L</b></td>
<td>m</td>
<td>m</td>
<td>Duodenum length</td>
<td>Duodenum length</td>
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<td>Sp</td>
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<td><b>Sp</b></td>
<td>mol/s</td>
<td>mol/s</td>
<td>Iron pulse</td>
<td>Iron pulse</td>
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<br>Parameters fixing :</br>
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<b>Parameters fixing :</b>
We have  
We have  

Revision as of 17:40, 23 October 2013

Iron coli project

Disease model

Introduction

At the beginning of the project, we must explore iron metabolism of a human. This model is the result of this exploration. So, we make a model of a healthy person.

Observations

60% of iron absorption takes place in the duodenum, the last 40% in the jejunum.Duodenum is located on the upper intestines, just after the stomach, and is usually 300mm long. Naturaly, the middle is the duodenum.

Absorption
Figure 1 : Overview of the iron regulation system in human body.

A healthy person absorbed 10% of the iron uptake of a day (2 mg), while a sick person could absorb between 50% and 100% of the iron uptake in one day ([1]).

Goals

This model is the first step for a sick person with treatment model . So, we want to have a realistic base for the final model.

Assumptions

  • Constant iron flow
  • Homogeneous fluid
  • The patient ingests 20mg of iron per day (Guideline Daily Amounts)

Materials and methods

The duodenum is a cylindrique pipe throw by a homogeneous fluid. So, we three step in the model: the filling of duodenum, steady state step and the emptying. This model have two state variable : iron disolved in the middle (S) and iron absorbed (A).
We considere a constant iron pulse every second arrive in the duodenum. S have a linear composant Sp who represent the pulses. We have the emptying compopsant and finally the absorption composant. We assume a linear absorption and a negative feedback regulation for A. Finally :

α s-1 Duodenum absorption rate
v m/s Chyme's flow average speed
L m Duodenum length
Sp mol/s Iron pulse
Parameters fixing : We have

Results

Absorption
Figure 2 : Iron in the middle and absorbed in the duodenum of a Healthy person.

Absorption
Figure 3 : Iron in the middle and absorbed in the duodenum of a sick person.

Conclusion

Models and scripts

References:

  1. Physiol Rev 93: 1721–1741, 2013 doi:10.1152/physrev.00008.2013 - Tomas Ganz "SYSTEMIC IRON HOMEOSTASIS"