Team:Evry/Notebook/w10
From 2013.igem.org
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A new Golden Gate of our 2<sup>nd</sup> construction are made with: | A new Golden Gate of our 2<sup>nd</sup> construction are made with: | ||
</p> | </p> | ||
- | < | + | <ul> |
<li>Fur Binding Site 1, 2 or 3 + sfGFP | <li>Fur Binding Site 1, 2 or 3 + sfGFP | ||
<li>Fur Binding Site 1, 2 or 3 + LacI-LVA | <li>Fur Binding Site 1, 2 or 3 + LacI-LVA | ||
- | </ | + | </ul> |
<p> | <p> | ||
Line 98: | Line 98: | ||
</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | + | 28.5 ng/µL | |
</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | 2. | + | 2.06 |
</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
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</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | + | - | |
</td> | </td> | ||
</tr> | </tr> | ||
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</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | + | 47.1 ng/µL | |
</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | + | 1.84 | |
</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | 1. | + | 1.53 |
</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | + | - | |
</td> | </td> | ||
</tr> | </tr> | ||
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</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | + | 25.4 ng/µL | |
</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | + | 1.72 | |
</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | + | 0.60 | |
</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | + | - | |
</td> | </td> | ||
</tr> | </tr> | ||
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</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | + | 28.2 ng/µL | |
</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | 2. | + | 2.15 |
</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | + | 2.31 | |
</td> | </td> | ||
<td align="center"> | <td align="center"> | ||
- | + | - | |
+ | </td> | ||
+ | </tr> | ||
+ | </tbody> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | <h2>3<sup>rd</sup> construction</h2> | ||
+ | |||
+ | <h3>Sequencing preparation</h3> | ||
+ | |||
+ | <p> | ||
+ | Preculture with LB medium (with carbenicillin) have been launched for Top10 transformed with our plasmid which contains the sfGFP under the control of Lac O promoter. After one night of culture minipreps of 3 different clones have been realized using the miniprep kit from Machrey Nagel. | ||
+ | </p> | ||
+ | |||
+ | <table cellpadding="10" cellspacing="0" align='center' border="1"> | ||
+ | <thead> | ||
+ | <tr> | ||
+ | <th align="center"> | ||
+ | Name | ||
+ | </th> | ||
+ | <th align="center"> | ||
+ | Clone | ||
+ | </th> | ||
+ | <th align="center"> | ||
+ | Concentration | ||
+ | </th> | ||
+ | <th align="center"> | ||
+ | 260/280 | ||
+ | </th> | ||
+ | <th align="center"> | ||
+ | 260/230 | ||
+ | </th> | ||
+ | <th align="center"> | ||
+ | Sequencing | ||
+ | </th> | ||
+ | </tr> | ||
+ | </thead> | ||
+ | |||
+ | <tbody> | ||
+ | <tr> | ||
+ | <td rowspan="4" align="center"> | ||
+ | <p>Enterobactin construction | ||
+ | <br/>(Lac O with EntA, EntD, EntF)</p> | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 1 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 62.7 ng/µL | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 2.02 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 0.84 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | - | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td align="center"> | ||
+ | 2 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 86.8 ng/µL | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 1.97 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 0.99 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | - | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td align="center"> | ||
+ | 3 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 112.2 ng/µL | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 1.98 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 1.23 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | - | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td align="center"> | ||
+ | 4 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 78.7 ng/µL | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 1.97 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 1.17 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | - | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td rowspan="2" align="center"> | ||
+ | <p>Enterobactin construction | ||
+ | <br/>(Lac O with EntB, EntC, EntE)</p> | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 1 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 80.1 ng/µL | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 1.92 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 1.01 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | - | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td align="center"> | ||
+ | 4 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 330.3 ng/µL | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 1.91 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | 1.20 | ||
+ | </td> | ||
+ | <td align="center"> | ||
+ | - | ||
</td> | </td> | ||
</tr> | </tr> | ||
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</table> | </table> | ||
- | < | + | <h2>Other</h2> |
<p> | <p> | ||
- | We prepared BL21 competent cells. | + | We prepared 20 tubes of BL21 competent cells. |
- | + | ||
- | + | ||
</p> | </p> | ||
Latest revision as of 08:30, 27 August 2013
Week 10: 19th August - 25th August
2nd Construction
Primer hybridation
After sequencing analysis we observed that our Golden Gate results were not significant for the 2nd construction.
However, our sequences of natural promoter give us good results. Then we supposed that the problem of our Golden Gate come from the hybridation of our synthetic promoters.
We made new hybridations of:
- Fur Binding Site 1 to 15 (5 µM)
- Andersen promoter J23100 (5 µM)
- RBS 0034 (5 µM)
Golden Gate
A new Golden Gate of our 2nd construction are made with:
- Fur Binding Site 1, 2 or 3 + sfGFP
- Fur Binding Site 1, 2 or 3 + LacI-LVA
5 µL of each Golden Gate product are transformed into Top10 competent cells. To controlled the quality of the transformation, a negative controle (transformation procedure without plasmid) and a positive controle (transformation procedure with plasmid 1A3) are made.
Sequencing preparation
Preculture with LB medium (with carbenicillin) have been launched for Top10 transformed with our 2nd construction, then minipreps have been realized using the miniprep kit from Machrey Nagel.
Name | Clone | Concentration | 260/280 | 260/230 | Sequencing |
---|---|---|---|---|---|
Fur Binding Site n°1
|
1 | 20.2 ng/µL | 2.07 | 1.29 | Bad |
Fur Binding Site n°1
|
1 | 28.5 ng/µL | 2.06 | 1.65 | - |
2 | 25.5 ng/µL | 2.01 | 1.84 | No sequencing | |
3 | 45.6 ng/µL | 1.91 | 1.90 | Bad | |
4 | 54.7 ng/µL | 1.83 | 1.27 | Bad | |
Fur Binding Site n°2
|
1 | 29.4 ng/µL | 2.01 | 1.46 | Bad |
2 | 25.5 ng/µL | 2.07 | 2.00 | Bad | |
3 | 15.0 ng/µL | 2.21 | 1.72 | No sequencing | |
4 | 47.1 ng/µL | 1.84 | 1.53 | - | |
Fur Binding Site n°2
|
1 | 25.4 ng/µL | 1.72 | 0.60 | - |
2 | 27.7 ng/µL | 1.93 | 1.67 | No sequencing | |
3 | 41.8 ng/µL | 1.87 | 1.69 | Bad | |
4 | 31.1 ng/µL | 1.82 | 1.26 | Bad | |
Fur Binding Site n°3
|
1 | 37.8 ng/µL | 1.85 | 1.40 | Bad |
2 | 78.3 ng/µL | 1.87 | 1.85 | Bad | |
3 | 53.4 ng/µL | 1.72 | 0.98 | Bad | |
4 | 23.3 ng/µL | 2.06 | 2.53 | No sequencing | |
Fur Binding Site n°3
|
2 | 43.8 ng/µL | 1.78 | 1.21 | Bad |
4 | 28.2 ng/µL | 2.15 | 2.31 | - |
3rd construction
Sequencing preparation
Preculture with LB medium (with carbenicillin) have been launched for Top10 transformed with our plasmid which contains the sfGFP under the control of Lac O promoter. After one night of culture minipreps of 3 different clones have been realized using the miniprep kit from Machrey Nagel.
Name | Clone | Concentration | 260/280 | 260/230 | Sequencing |
---|---|---|---|---|---|
Enterobactin construction
|
1 | 62.7 ng/µL | 2.02 | 0.84 | - |
2 | 86.8 ng/µL | 1.97 | 0.99 | - | |
3 | 112.2 ng/µL | 1.98 | 1.23 | - | |
4 | 78.7 ng/µL | 1.97 | 1.17 | - | |
Enterobactin construction
|
1 | 80.1 ng/µL | 1.92 | 1.01 | - |
4 | 330.3 ng/µL | 1.91 | 1.20 | - |
Other
We prepared 20 tubes of BL21 competent cells.