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- | PNP degradation | + | <html> |
| + | <link href='http://fonts.googleapis.com/css?family=Open+Sans:400,400italic,700,700italic' rel='stylesheet' type='text/css'> |
| + | <script type="text/javascript" src="https://raw.github.com/jy886/SCAU-China/master/jquery-1.7.2.min.js"></script> |
| + | |
| + | <style type="text/css"> |
| + | #top-section{ |
| + | height:0px; |
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| + | width:980px; |
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| + | display:none; |
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| + | background-color:transparent; |
| + | position: relative; |
| + | float:left; |
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| + | top:-6px; |
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| + | font-size: 80%; |
| + | line-height: 1em; |
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| + | |
| + | .left-menu, .left-menu a { |
| + | text-align: left; |
| + | color:#999999; |
| + | text-transform: lowercase; |
| + | } |
| + | |
| + | .left-menu:hover { |
| + | color: #F4A460; |
| + | background-color:transparent; |
| + | } |
| + | |
| + | .right-menu{width:400px; float:right} |
| + | .right-menu, .right-menu a { |
| + | right: 0px; |
| + | text-align: right; |
| + | color: #999999; |
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| + | #menubar ul { |
| + | color: #999999; |
| + | list-style: none; |
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| + | #menubar li { |
| + | display: inline; |
| + | position: relative; |
| + | cursor: pointer; |
| + | padding-left: 0px; |
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| + | # color: #999999; |
| + | #} |
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| + | .left-menu:hover a { |
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| + | .left-menu li a:hover { |
| + | color: #F4A460; |
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| + | } |
| + | |
| + | |
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| + | .right-menu li a { |
| + | padding: 0px 15px 0px 0px; |
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| + | background-color: transparent; |
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| + | .right-menu li a:hover { |
| + | color: #F4A460; |
| + | text-decoration: underline; |
| + | } |
| + | |
| + | |
| + | /* Logo */ |
| + | |
| + | #logo a {height:26px;padding:80px 0 20px;margin:0;} |
| + | /* Links */ |
| + | a, a:visited {color:#3294a6;text-decoration:none;} |
| + | a:hover, .widget ul a:hover {color:#3294a6;text-decoration:underline;} |
| + | /* Theme Color */ |
| + | #header-top, h3.deco span.inner, #footer, .post-format, #commentform #submit, .flex-direction-nav li a:hover, .overlay .caption span, #portfolio-sort a.active {background: #3294a6;} |
| + | .post-format {background-color: #3294a6;} |
| + | #portfolio-sort li a, #primary-nav ul li a:hover, #primary-nav ul li:hover, #primary-nav ul li.sfHover a, #primary-nav ul li.current-cat a, #primary-nav ul li.current_page_item a, #primary-nav ul li.current-menu-item a {color:#3294a6 !important;} |
| + | |
| + | /* Clearfix */ |
| + | .clearfix{*zoom:1;}.clearfix:before,.clearfix:after{display:table;content:"";}.clearfix:after{clear:both;} |
| + | /* Responsive Images */ |
| + | img, object, embed {max-width: 100%;height: auto;} |
| + | img {-ms-interpolation-mode: bicubic;} |
| + | #map_canvas img, .map_canvas img {max-width: none!important;} |
| + | |
| + | /* =Document Setup */ |
| + | |
| + | html {background: #e6e6e6 url("https://static.igem.org/mediawiki/2013/1/1c/Scau_bg.gif") repeat;} |
| + | body { |
| + | font: 13px/24px 'Open Sans',Helvetica, Arial, sans-serif; |
| + | color: #666; |
| + | background: -moz-linear-gradient(top, rgba(0,0,0,0.05) 0%, rgba(0,0,0,0) 300px); |
| + | background: -webkit-gradient(linear, left top, left bottom, color-stop(0%,rgba(0,0,0,0.05)), color-stop(300px,rgba(0,0,0,0))); |
| + | background: -webkit-linear-gradient(top, rgba(0,0,0,0.05) 0%,rgba(0,0,0,0) 300px); |
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| + | background: linear-gradient(top, rgba(0,0,0,0.05) 0%,rgba(0,0,0,0) 300px); |
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| + | } |
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| + | a:hover {color:#222;cursor:pointer;} |
| + | |
| + | /* Headings */ |
| + | h1, h2, h3, h4, h5, h6 {font-weight:bold; margin: 0 0 10px; color:#3a3a40;} |
| + | .entry-content h1, .entry-content h2, .entry-content h3, .entry-content h4, .entry-content h5, .entry-content h6 {margin: 0 0 20px;} |
| + | .entry-content h1 {font-size: 22px;line-height: 28px;} |
| + | .entry-content h2 {font-size: 18px;line-height: 26px;} |
| + | .entry-content h3 {font-size: 16px;line-height: 26px;} |
| + | .entry-content h4 {font-size: 14px;line-height: 24px;} |
| + | .entry-content h5 {font-size: 13px;line-height: 22px;} |
| + | .entry-content h6 {font-size: 12px;line-height: 20px;} |
| + | |
| + | /* Page Structure */ |
| + | #site-container { |
| + | margin: 0 auto; |
| + | background:#fff; |
| + | width: 960px; |
| + | padding:0 25px; |
| + | box-shadow:0 0 10px rgba(0,0,0,0.1);} |
| + | #content1 {float:left;width: 670px;margin:0 45px 0 0;} |
| + | #content1.fullwidth {width:100%;float:none;margin:0;} |
| + | #sidebar {float:left;width:195px;font-size:12px;margin:10px 0 0;} |
| + | #primary {padding:0 25px;} |
| + | |
| + | /* Header */ |
| + | #header {background: url("https://static.igem.org/mediawiki/2013/a/ab/SCAU-Doubleborder.gif") repeat-x bottom;margin:0 0 10px;} |
| + | #header #logo {float:left;padding:50px 0 0;margin:0 0 -2px; float:left;} |
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| + | color:#fff; |
| + | padding:5px 10px; |
| + | font-size:12px;} |
| + | #header-top .left {float:left;} |
| + | |
| + | /* Page Header */ |
| + | #page-header {background: url("https://static.igem.org/mediawiki/2013/a/ab/SCAU-Doubleborder.gif") repeat-x bottom; margin:0 0 20px; padding:0 15px 20px; position:relative;} |
| + | #page-header h1, #page-header strong {font-size: 26px;margin:0 0 5px;letter-spacing:-1px;color:#262626;font-decoration:none;border-bottom: 0px solid rgb(170, 170, 170);} |
| + | #page-header p { |
| + | margin:0; |
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| + | font-size: 14px;} |
| + | #page-header .navigation {float:right;} |
| + | |
| + | /* Footer */ |
| + | #footer { |
| + | padding: 25px; |
| + | margin: 15px 0 0; |
| + | color: #fff; |
| + | font-size: 12px; |
| + | } |
| + | #footer a {color:#fff;border-bottom:1px dotted #fff} |
| + | #footer a:hover {border-bottom:none;} |
| + | #footer-widgets {list-style:none;padding:0;margin:0 -25px 0 0;} |
| + | #footer-widgets .widget {float:left;width:286px;margin:0 25px 0 0;} |
| + | #footer-widgets .widget h4 { |
| + | background: none; |
| + | color: #fff; |
| + | border-bottom: none; |
| + | padding: 0; |
| + | margin-top: 0; |
| + | margin-right: 0; |
| + | margin-bottom: 10px; |
| + | margin-left: 0; |
| + | } |
| + | #footer-widgets .widget .div { |
| + | background:#fff; |
| + | height:1px; |
| + | width:50px; |
| + | display:block; |
| + | margin:0 0 15px;} |
| + | #footer-bottom { |
| + | background:#1a1a1a; |
| + | padding:20px 25px; |
| + | margin:0; |
| + | line-height: 10px; |
| + | color:#fafafa; |
| + | font-size:11px;} |
| + | #footer-bottom #footer-nav {float:left;} |
| + | #footer-nav ul {margin:2px 0 0;padding:0;list-style:none;} |
| + | #footer-nav li { |
| + | float:left; |
| + | margin:0 10px 0 0; |
| + | padding:0 10px 0 0; |
| + | border-right: 1px dotted #8c8e91; |
| + | line-height: 5px;} |
| + | #footer-nav li:last-child {border-right:none;} |
| + | #footer-nav li a {border-bottom:none;color:#fff;} |
| + | #footer-bottom a {color:#fff;font-size:12px;border-bottom:1px dotted #fafafa;} |
| + | #footer-bottom a:hover {border-bottom:1px solid #fff;text-decoration:none;} |
| + | #footer-bottom #copyright {float:right;font-size:11px;} |
| + | |
| + | /* =Navigation & Menus */ |
| + | |
| + | #primary-nav { float:right;margin: 90px 0 0;padding:0;} |
| + | #primary-nav ul {list-style: none outside none;margin: 0;padding: 0;} |
| + | #primary-nav ul a { |
| + | display: block; |
| + | position: relative; |
| + | color: #3A3A40; |
| + | line-height: 18px; |
| + | text-decoration:none; |
| + | text-transform:uppercase; |
| + | height: 32px;} |
| + | #primary-nav ul a.sf-with-ul {padding-right:15px;} |
| + | #primary-nav ul li {float: left;position: relative;z-index: 40;margin-left: 30px;} |
| + | #primary-nav ul li:hover {visibility: inherit;} |
| + | #primary-nav ul li:hover ul, #primary-nav ul li.sfHover ul {left: -1px;top: 20px;z-index: 99;} |
| + | #primary-nav ul li:hover li ul, #primary-nav ul li.sfHover li ul, #primary-nav ul li li:hover li ul, #primary-nav ul li li.sfHover li ul, #primary-nav ul li li li:hover li ul, #primary-nav ul li li li.sfHover li ul {top: -9999em;} |
| + | #primary-nav ul li li:hover ul, #primary-nav ul li li.sfHover ul, #primary-nav ul li li li:hover ul, #primary-nav ul li li li.sfHover ul, #primary-nav ul li li li li:hover ul, #primary-nav ul li li li li.sfHover ul {left: 180px;top: -12px;} |
| + | #primary-nav ul li a:hover, #primary-nav ul li:hover, #primary-nav ul li.sfHover a, #primary-nav ul li.current-cat a, #primary-nav ul li.current_page_item a, #primary-nav ul li.current-menu-item a {text-decoration: none;} |
| + | #primary-nav ul ul { |
| + | background: #fff; |
| + | border: 1px solid #E0E0E0; |
| + | box-shadow: 2px 2px 0 rgba(0, 0, 0, 0.05); |
| + | margin: 10px 0 0; |
| + | padding: 4px 0; |
| + | position: absolute; |
| + | top: -9999em; |
| + | width: 180px; |
| + | border-radius: 1px; |
| + | -moz-border-radius: 1px; |
| + | -webkit-border-radius: 1px;} |
| + | #primary-nav ul ul li {background: none;float: none;width: 100%;margin:0;} |
| + | #primary-nav ul ul li:last-child {border-bottom: medium none;} |
| + | #primary-nav ul ul li a { |
| + | font-size: 11px; |
| + | font-weight: normal; |
| + | color:#808080; |
| + | display: block; |
| + | padding: 8px 4px; |
| + | margin: 0 10px; |
| + | height: 18px; |
| + | border-bottom: 1px dotted #ccc;} |
| + | #primary-nav ul ul li:last-child a {border-bottom:0;} |
| + | #primary-nav .sf-sub-indicator { |
| + | display:inline; |
| + | padding:0; |
| + | margin:0; |
| + | border:none; |
| + | position:absolute; |
| + | right:0; |
| + | top:0; } |
| + | #primary-nav ul ul .sf-sub-indicator {right: 10px;top: 9px;} |
| + | #primary-nav ul li.sfHover ul a {color: #444 !important;} |
| + | #primary-nav ul li.sfHover ul a:hover {color: #444 !important;} |
| + | #primary-nav select {display:none;} |
| + | |
| + | /* =Homepage */ |
| + | #callout {padding:0;float:left;margin:0 30px 0 0;width:300px;} |
| + | #callout h2 {font-size:38px;font-weight:bold;line-height:38px;margin:0 0 10px;text-transform:uppercase;letter-spacing:-2px;color:#212126;border-bottom: 0px solid rgb(170, 170, 170);} |
| + | #callout h3 { |
| + | font-size:18px; |
| + | font-weight:normal; |
| + | color:#8c8c8c; |
| + | font-style:italic; |
| + | font-size:center;} |
| + | #home-portfolio ul, #home-blog ul, #home-blocks ul {list-style:none;padding:0;margin: 0 -15px 20px 0;} |
| + | #home-portfolio li {float:left;margin:0 15px 10px 0;width:216px;text-align:center;} |
| + | #home-portfolio .entry-content p {margin:0;} |
| + | #home-portfolio .entry-title, #home-blog .entry-title {margin:0;} |
| + | #home-portfolio .entry-title, #home-portfolio .entry-title a, #home-blog .entry-title, #home-blog .entry-title a {font-weight:bold;color: #3A3A40;font-size: 14px;line-height: 18px;} |
| + | #home-blog li, #home-blocks li { |
| + | float:left; |
| + | margin:0 15px 15px 0; |
| + | padding:0; |
| + | width:216px; |
| + | font-size:12px; |
| + | border:none;} |
| + | #home-blog .entry-title { margin: 0 0 10px;} |
| + | #home-blog .entry-thumb-placeholder {height: 172px;margin: 0 0 10px;width: 100%;} |
| + | h3.deco { |
| + | display:block; |
| + | background: url("https://static.igem.org/mediawiki/2013/a/ab/SCAU-Doubleborder.gif") repeat-x center; |
| + | margin:0 -25px 20px; |
| + | text-align:center; |
| + | text-transform:uppercase; |
| + | font-weight:normal; |
| + | clear: both; |
| + | font-size: 13px;} |
| + | h3.deco span.outer {background:#fff;} |
| + | h3.deco span.inner { |
| + | padding:2px 10px; |
| + | margin:0 10px; |
| + | color:#fff;} |
| + | |
| + | #sponsor1{float:left;} |
| + | #sponsor2{float:right;} |
| + | </style> |
| + | |
| + | <body id="body" class="home"> |
| + | |
| + | <!-- #site-container --> |
| + | <div id="site-container"> |
| + | |
| + | <!-- #header-top --><!-- /#header-top --> |
| + | |
| + | <!-- #header --> |
| + | <header id="header" class="clearfix"> |
| + | <!-- #logo --> |
| + | <div id="logo"> |
| + | <a> <img src="https://static.igem.org/mediawiki/2013/6/65/SCAU-china_logo_.png"> </a> |
| + | </div> |
| + | <div id="logo"> |
| + | <a> <img src="https://static.igem.org/mediawiki/2013/7/74/SCAU-China_igemlogo.png"> </a> |
| + | </div> |
| + | <!-- /#logo --> |
| + | <!-- #primary-nav --> |
| + | <nav id="primary-nav" role="navigation" class="clearfix"> |
| + | <ul id="menu-primary-nav" class="nav sf-menu clearfix"> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China" >Home</a></li> |
| + | <li><a href="#">Team</a> |
| + | <ul class="sub-menu"> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/Team" >Members</a></li> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/Attributions" >Attributions</a></li> |
| + | </ul> |
| + | </li> |
| + | <li class="current-menu-item"><a href="#">Project</a> |
| + | <ul class="sub-menu"> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/Project" >Overview</a></li> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/Project/OPdegradation" >OP Degradation</a></li> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/Project/PNPsensor" >PNP Sensor</a></li> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/Project/PNPdegradation" >PNP Degradation</a></li> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/Project/SuicideSystem" >Suicide System</a></li> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/Notebook">Notes</a></li> |
| + | </ul> |
| + | </li> |
| + | <li><a href="#">Results</a> |
| + | <ul class="sub-menu"> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/Parts" >Biobricks</a></li> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/Achievements" >Achievements</a></li> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/Safety" >Safety</a></li> |
| + | </ul> |
| + | </li> |
| + | <li><a href="#">Human Practice</a> |
| + | <ul class="sub-menu"> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/HP/Survey">Survey</a></li> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/HP/Communication">Communication</a></li> |
| + | <li><a href="https://2013.igem.org/Team:SCAU-China/HP/Game">card Game</a></li> |
| + | </ul> |
| + | </li> |
| + | </ul> |
| + | </nav> |
| + | <!-- #primary-nav --> |
| + | |
| + | </header> |
| + | |
| + | <!-- #page-header --> |
| + | <div id="page-header"> |
| + | <h1>PNP Degradation</h1> |
| + | </div> |
| + | |
| + | <!-- #primary --> |
| + | <div id="primary" class="clearfix"> |
| + | <section id="content1" role="main" class="clearfix fullwidth"> |
| + | <p style="word-break:break-all"> At the beginning, we find that PNP can be degraded to 4-nitrocatechol at the presence of enzyme NphA1 and NphA2. So we transform a plasmid containing these two genes into E.coli. Then we add PNP into the bacteria solutions when the recombinational bacteria are incubated to OD 0.3 to form a gradient concentration. After adding PNP, we use microplate reader to measure pnp's characteristic absorption peak changes every 2 hours in 3 repeated experiments. We spend 36 hours to track the change of the absorption. Though we measure the changes day and night, unfortunately, experiment results turned out not so perfectly. We cannot find obvious degradation of the PNP.</p> |
| + | <center><p><img src="https://static.igem.org/mediawiki/2013/8/8f/SCAU-CHINA_8.jpg" width="436" height="237"></p></center> |
| + | <p style="word-break:break-all"> We find another pathway to degrade PNP in 5 steps with 4 enzymes in Rhodococcus sp. Strain PN1, but the problem is that we fail to locate one of the essential enzyme gene. So we only transformed 2 plasmids with 3 genes into E.coli and measure the changes using the same method above. Sadly, PNP concentration only reduces little to some extent.</p> |
| + | <center><p><img src="https://static.igem.org/mediawiki/2013/5/5a/SCAU-CHINA_9.jpg" width="840" height="400"></p></center> |
| + | <center><font size=-2>Another PNP degradation Pathway</font></center> |
| + | </section> |
| + | </div> |
| + | |
| + | <!-- #footer-bottom --> |
| + | <footer id="footer-bottom" class="clearfix"> |
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| + | <li>If you can't browse, please use Chrome or Firefox.</li> |
| + | </ul> |
| + | </nav> |
| + | <div id="copyright">iGEM 2013 SCAU-China</div> |
| + | </footer> |
| + | <!-- /#footer-bottom --> |
| + | |
| + | </div> |
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