Team:ZJU-China/Project/Safety/CaCO3Shell

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== Safety part I : Encapsulation of Living E.coli with CaCO<sub>3</sub> / Ca<sub>3</sub>(PO<sub>4</sub>)<sub>2</sub> ==
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== Safety Part I : Artificial shell ==
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__TOC__
 +
=== Overview ===
 +
Our atrazine killer is designed to move in the plate and in the soil, if applied to eliminate the atrazine in the environment, and thus we need to guarantee that it will not move around and pose potential threat to the environment. Here, we come up with an idea to encapsulate our engineered bacteria with '''CaCO<sub>3</sub>/CaP''' (amorphous calcium phosphate) on the purpose of constraining their movement before using and extending the preservation time.
-
Our atrazine killer is designed to move in the plate and in the soil, if applied to eliminate the atrazine in the environment, and thus we need to guarantee that it will not move around and pose potential threat to the environment. Here, we come up with an idea to encapsulate our engineered bacteria with CaCO<sub>3</sub>/ Ca<sub>3</sub>(PO<sub>4</sub>)<sub>2</sub> on the purpose of constraining their movement before using and extending the preservation time.
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=== Background ===
 +
During our daily life, we can see egg shells everywhere and we know that they are consist of '''CaCO<sub>3</sub>'''. Also, our bones and teeth are made of '''CaP''' ((Ca<sub>10</sub>(PO<sub>4</sub>)<sub>x</sub>(OH)<sub>y</sub>)). In fact, as biocompatible, stable, and nontoxic templates, these two kind of materials already have received increased attention.  
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As a biocompatible, stable and nontoxic shell, calcium carbonate and calcium phosphate have received increased attention in material sciences. The use of decomposable shell will not only prevent our engineered bacteria from posing potential threat to environment before they are designed to function ,but have little negative impact on the viability of the living organism.  
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[[File:ZJU-Safety-Egg.png|330px|left]]
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[[File:ZJU-Safety-Bone.png|330px|right]]
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CaCO<sub>3</sub> / Ca<sub>3</sub>(PO<sub>4</sub>)<sub>2</sub> spontaneously precipitates by mixing of two concentrated solutions of calcium and carbonate/phosphate. The precipitation leads to small, spherical and non-aggregated amorphous nano-precipitates, instantly formed upon mixing saturated salt solutions like CaCl<sub>2</sub> and Na2CO3/ Na<sub>2</sub>HPO<sub>4</sub>. We use the similar conditions to produce CaCO<sub>3</sub> and Ca<sub>3</sub>(PO<sub>4</sub>)<sub>2</sub> shell published by Jennifer Flemke<sup>[1]</sup> and Wang Ben<sup>[2]</sup> respectively.
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<html><div class="clean"></div></html>
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__TOC__
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=== Protocol of Encapsulation of E.coli using CaCO<sub>3</sub> ===
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It is believed that artificial shells can '''extend preservation time''' and '''protect bacteria''' from the outside world. Ben Wang et.al has made mineral artificial shells on yeast cells and proved that they would go into G0 state since proliferation of the encased cells is not observed even in the nutritive medium, which means yeast would not grow or die for a long time in a shell.
 +
 
 +
Previous studies also pointed out that the '''electronic interaction''' is a key factor in biomineralization, especially the '''carboxylates(-COOH)''' and '''hydroxyl(-OH)''' or other charged functional groups rich in proteins. Cell surface can also be modified by introducing some functional factors. '''Polymers''' are usually been used because of the good capacity for self-assembly. Opposite charged polymers, such as PAH/PSS or PDADMAC/PAH are widely applied because of their good ability to form LBL layers on the surface and provide carboxylates that can bind to Ca<sup>2+</sup>.
 +
 
 +
<gallery>
 +
File:ZJU-CaP-1.jpg|PDADMAC
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File:ZJU-CaP-2.jpg|PAA           
 +
File:ZJU-CaP-3.jpg|PAH
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File:ZJU-CaP-4.jpg|PSS
 +
</gallery>
 +
 
 +
The use of decomposable shell will not only prevent our engineered bacteria from posing potential threat to environment before they are designed to function, but have little negative impact on the viability of the living organism.
 +
 
 +
=== Design ===
 +
We believe that E.coli share a similar character with the yeast cells, since they all have '''polysaccharide''' on the surface, which provide negatively charged '''hydroxyl(-OH) to bind with Ca<sup>2+</sup>'''. Thus we designed a calcium phosphate shell. In comparison, we used calcium carbonate shell to see the result. Also, we tried polymers to better form the shell.
 +
 
 +
<center>
 +
[[File:ZJU-Safety-Design-1.png|600px]]
 +
</center>
 +
<center>
 +
Fig.1 Molecular structure of lipopolysaccharide
 +
</center>
 +
 
 +
 
 +
CaCO<sub>3</sub>/CaP spontaneously precipitates by mixing of two concentrated solutions of calcium and carbonate/phosphate. The precipitation leads to small, spherical and non-aggregated amorphous nano-precipitates, instantly formed upon mixing saturated salt solutions like CaCl<sub>2</sub> and Na<sub>2</sub>CO<sub>3</sub>/Na<sub>2</sub>HPO<sub>4</sub>.
 +
 
 +
<center>
 +
[[File:ZJU-CaP-5.png|500px]]
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</center>
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<center>
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Fig.2 Schematic diagram of the preparation of Calcium phosphate/carbonate shell
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</center>
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 +
 
 +
<center>
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[[File:ZJU-CaP-6.png|600px]]
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</center>
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<center>
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Fig.3 Schematic diagram of the preparation of LBL treated polymer shell
 +
</center>
 +
 
 +
=== Characterization ===
 +
''E.coli'' with artificial shells were viewed under SEM and TEM. From fig 4 we can tell that the artificial shells have successfully encapsuled ''E.coli''.
 +
 
 +
<center>
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[[File:ZJU-CaP-7.jpg|200px]]
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[[File:ZJU-CaP-8.jpg|200px]]
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[[File:ZJU-CaP-9.jpg|200px]]
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 +
Fig.4 TEM image of biominerized ''E.coli'': '''a)''' bare ''E.coli''; '''b)''' ''E.coli'' with CaCO<sub>3</sub> shell, 0.33M CaCl<sub>2</sub>/0.33M Na<sub>2</sub>CO<sub>3</sub> '''c)''' ''E.coli'' with Na<sub>2</sub>HPO<sub>4</sub> shell, 0.05M CaCl<sub>2</sub>/0.05M Na<sub>2</sub>HPO<sub>4</sub>
 +
 
 +
</center>
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When capsuled by LBL multilayer and mineral, a spherical calcium phosphate has been formed.
 +
 
 +
<center>
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[[File:ZJU-CaP-10.png|190px]]
 +
 
 +
Fig.5 TEM image of multilayer biominerized ''E.coli''
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</center>
 +
 
 +
=== Remove the shell ===
 +
 
 +
Both EDTA and HCl can be used to remove the shell. In our experiment, we tested their effect on the viability of ''E.coli''. 0.05M EDTA or 0.05M HCl were added and the growth curve was tested up to 700min (Fig.6). Results show that HCl is a better decapusulation reagent since its influence on the bacteria is smaller.
 +
 
 +
<center>
 +
[[File:ZJU-Safety-Artificial-Shell-6.png]]
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 +
Fig.6 ''E.coli'' cell viability test after shell formation and EDTA/HCl treatment procedure
 +
</center>
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 +
=== Supporting imformation ===
 +
'''Protocol of Encapsulation of ''E.coli'' using CaCO<sub>3</sub>'''
# 1 mL of overnight culture are added to a sterile reaction tube and centrifuged for 1 min at 12000 rpm.
# 1 mL of overnight culture are added to a sterile reaction tube and centrifuged for 1 min at 12000 rpm.
# The cells are washed 3 times with 0.33M CaCl<sub>2</sub>
# The cells are washed 3 times with 0.33M CaCl<sub>2</sub>
# Suspend the cells in 5 mL of 0.33M CaCl<sub>2</sub> solution and incubate them under gentle stirring for 15 min.
# Suspend the cells in 5 mL of 0.33M CaCl<sub>2</sub> solution and incubate them under gentle stirring for 15 min.
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# A 5mL aliquot of 0.33M Na2CO3 is added under vigorous stirring for 30s.  
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# A 5mL aliquot of 0.33M Na<sub>2</sub>CO<sub>3</sub> is added under vigorous stirring for 30s.
# Keep the whole suspension under stirring for 30 min for the precipitation of the CaCO<sub>3</sub> microcapsules.
# Keep the whole suspension under stirring for 30 min for the precipitation of the CaCO<sub>3</sub> microcapsules.
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=== Protocol of Encapsulation of E.coli using Ca<sub>3</sub>(PO<sub>4</sub>)<sub>2</sub> ===
+
'''Protocol of Encapsulation of ''E.coli'' using CaP'''
# 1 mL of overnight culture are added to a sterile reaction tube and centrifuged for 1 min at 12000 rpm.
# 1 mL of overnight culture are added to a sterile reaction tube and centrifuged for 1 min at 12000 rpm.
# The cells are washed 3 times with 0.05M CaCl<sub>2</sub>
# The cells are washed 3 times with 0.05M CaCl<sub>2</sub>
# Suspend the cells in 5 mL of 0.05M CaCl<sub>2</sub> solution and incubate them under gentle stirring for 15 min.
# Suspend the cells in 5 mL of 0.05M CaCl<sub>2</sub> solution and incubate them under gentle stirring for 15 min.
# A 5 mL aliquot of 0.03M Na<sub>2</sub>HPO<sub>4</sub> is added under vigorous stirring at the speed of 3 drops per minutes.
# A 5 mL aliquot of 0.03M Na<sub>2</sub>HPO<sub>4</sub> is added under vigorous stirring at the speed of 3 drops per minutes.
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# Keep the whole suspension under stirring for 30 min for the precipitation of the Ca<sub>3</sub>(PO<sub>4</sub>)<sub>2</sub>microcapsules.
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# Keep the whole suspension under stirring for 30 min for the precipitation of the CaP microcapsules.
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To release the cells from the calcium capsules, the capsules are dispersed in 0.25M EDTA (pH=8) solution under constant shaking for 30min and afterwards washed twice with 0.25M EDTA(pH=8) and twice with 0.05M NaCl.  
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'''Protocol of decapsulation of ''E.coli'''''
 +
 
 +
To release the cells from the calcium capsules, the capsules are dispersed in 0.05M EDTA (pH=8) solution under constant shaking for 30min and afterwards washed twice with 0.05M EDTA(pH=8) and twice with 0.05M NaCl.
=== Reference ===
=== Reference ===
-
[1] Flemke J, Maywald M, Sieber V. Encapsulation of Living ''E. coli'' Cells in Hollow Polymer Microspheres of Highly Defined Size[J]. Biomacromolecules, 2012, 14(1): 207-214.
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[1] Yeast Cells with an Artificial Mineral Shell: Protection and Modification of Living Cells by Biomimetic Mineralization. Ben Wang et.al. ''Angew. Chem.'' '''2008''', 47 , 3560–3564
 +
 
 +
[2] Encapsulation of Living''E. coli'' Cells in Hollow Polymer Microspheres of Highly Defined Size. Jennifer Flemke et.al. ''Biomacromolecules.'' '''2013''', 14, 207 - 214
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[2] [http://cdmd.cnki.com.cn/Article/CDMD-10335-1012310722.htm http://cdmd.cnki.com.cn/Article/CDMD-10335-1012310722.htm]
 
<html>
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<div style="float:left;">Previous:
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  <a href="./Overview">Safety: Overview</a>
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</div>
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<div style="float:right;">Next:
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  <a href="./EcoliSuicide">Safety: E.coli Suicide</a>
 +
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 +
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Latest revision as of 22:09, 28 October 2013

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Safety Part I : Artificial shell

Contents

Overview

Our atrazine killer is designed to move in the plate and in the soil, if applied to eliminate the atrazine in the environment, and thus we need to guarantee that it will not move around and pose potential threat to the environment. Here, we come up with an idea to encapsulate our engineered bacteria with CaCO3/CaP (amorphous calcium phosphate) on the purpose of constraining their movement before using and extending the preservation time.

Background

During our daily life, we can see egg shells everywhere and we know that they are consist of CaCO3. Also, our bones and teeth are made of CaP ((Ca10(PO4)x(OH)y)). In fact, as biocompatible, stable, and nontoxic templates, these two kind of materials already have received increased attention.

ZJU-Safety-Egg.png
ZJU-Safety-Bone.png

It is believed that artificial shells can extend preservation time and protect bacteria from the outside world. Ben Wang et.al has made mineral artificial shells on yeast cells and proved that they would go into G0 state since proliferation of the encased cells is not observed even in the nutritive medium, which means yeast would not grow or die for a long time in a shell.

Previous studies also pointed out that the electronic interaction is a key factor in biomineralization, especially the carboxylates(-COOH) and hydroxyl(-OH) or other charged functional groups rich in proteins. Cell surface can also be modified by introducing some functional factors. Polymers are usually been used because of the good capacity for self-assembly. Opposite charged polymers, such as PAH/PSS or PDADMAC/PAH are widely applied because of their good ability to form LBL layers on the surface and provide carboxylates that can bind to Ca2+.

PDADMAC

PAA

PAH

PSS

The use of decomposable shell will not only prevent our engineered bacteria from posing potential threat to environment before they are designed to function, but have little negative impact on the viability of the living organism.

Design

We believe that E.coli share a similar character with the yeast cells, since they all have polysaccharide on the surface, which provide negatively charged hydroxyl(-OH) to bind with Ca2+. Thus we designed a calcium phosphate shell. In comparison, we used calcium carbonate shell to see the result. Also, we tried polymers to better form the shell.

ZJU-Safety-Design-1.png

Fig.1 Molecular structure of lipopolysaccharide


CaCO3/CaP spontaneously precipitates by mixing of two concentrated solutions of calcium and carbonate/phosphate. The precipitation leads to small, spherical and non-aggregated amorphous nano-precipitates, instantly formed upon mixing saturated salt solutions like CaCl2 and Na2CO3/Na2HPO4.

ZJU-CaP-5.png

Fig.2 Schematic diagram of the preparation of Calcium phosphate/carbonate shell


ZJU-CaP-6.png

Fig.3 Schematic diagram of the preparation of LBL treated polymer shell

Characterization

E.coli with artificial shells were viewed under SEM and TEM. From fig 4 we can tell that the artificial shells have successfully encapsuled E.coli.

ZJU-CaP-7.jpg ZJU-CaP-8.jpg ZJU-CaP-9.jpg

Fig.4 TEM image of biominerized E.coli: a) bare E.coli; b) E.coli with CaCO3 shell, 0.33M CaCl2/0.33M Na2CO3 c) E.coli with Na2HPO4 shell, 0.05M CaCl2/0.05M Na2HPO4

When capsuled by LBL multilayer and mineral, a spherical calcium phosphate has been formed.

ZJU-CaP-10.png

Fig.5 TEM image of multilayer biominerized E.coli

Remove the shell

Both EDTA and HCl can be used to remove the shell. In our experiment, we tested their effect on the viability of E.coli. 0.05M EDTA or 0.05M HCl were added and the growth curve was tested up to 700min (Fig.6). Results show that HCl is a better decapusulation reagent since its influence on the bacteria is smaller.

ZJU-Safety-Artificial-Shell-6.png

Fig.6 E.coli cell viability test after shell formation and EDTA/HCl treatment procedure

Supporting imformation

Protocol of Encapsulation of E.coli using CaCO3

  1. 1 mL of overnight culture are added to a sterile reaction tube and centrifuged for 1 min at 12000 rpm.
  2. The cells are washed 3 times with 0.33M CaCl2
  3. Suspend the cells in 5 mL of 0.33M CaCl2 solution and incubate them under gentle stirring for 15 min.
  4. A 5mL aliquot of 0.33M Na2CO3 is added under vigorous stirring for 30s.
  5. Keep the whole suspension under stirring for 30 min for the precipitation of the CaCO3 microcapsules.

Protocol of Encapsulation of E.coli using CaP

  1. 1 mL of overnight culture are added to a sterile reaction tube and centrifuged for 1 min at 12000 rpm.
  2. The cells are washed 3 times with 0.05M CaCl2
  3. Suspend the cells in 5 mL of 0.05M CaCl2 solution and incubate them under gentle stirring for 15 min.
  4. A 5 mL aliquot of 0.03M Na2HPO4 is added under vigorous stirring at the speed of 3 drops per minutes.
  5. Keep the whole suspension under stirring for 30 min for the precipitation of the CaP microcapsules.

Protocol of decapsulation of E.coli

To release the cells from the calcium capsules, the capsules are dispersed in 0.05M EDTA (pH=8) solution under constant shaking for 30min and afterwards washed twice with 0.05M EDTA(pH=8) and twice with 0.05M NaCl.

Reference

[1] Yeast Cells with an Artificial Mineral Shell: Protection and Modification of Living Cells by Biomimetic Mineralization. Ben Wang et.al. Angew. Chem. 2008, 47 , 3560–3564

[2] Encapsulation of LivingE. coli Cells in Hollow Polymer Microspheres of Highly Defined Size. Jennifer Flemke et.al. Biomacromolecules. 2013, 14, 207 - 214


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