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Team:Paris Saclay/Notebook/July/31
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==='''A - Aerobic/Anaerobic regulation system'''=== | ==='''A - Aerobic/Anaerobic regulation system'''=== | ||
| - | ===='''Objective : obtaining | + | ===='''Objective : obtaining BBa_K1155004, BBa_K1155005, BBa_K155006'''==== |
| - | ===='''1 -Ligation of NarK, NarG, NirB in | + | ===='''1 -Digestion of pSB1C3 by EcoRI/PstI'''==== |
| + | |||
| + | Abdou | ||
| + | |||
| + | Used quantities : | ||
| + | * pSB1C3 : 16µL | ||
| + | * Buffer FD : 2µL | ||
| + | * EcoRI FD : 1µL | ||
| + | * PstI FD : 1µL | ||
| + | |||
| + | We let our digestion 1h30 at 37°C. | ||
| + | |||
| + | ===='''2 - Inactivation of EcoRI/PstI used for the digestion of pSB1C3'''==== | ||
| + | |||
| + | Abdou | ||
| + | |||
| + | Protocol : [[Team:Paris_Saclay/ethanol|Ethanol precipitation]] | ||
| + | |||
| + | ===='''3 -Ligation of NarK, NarG, NirB in pSB1C3'''==== | ||
XiaoJing | XiaoJing | ||
| Line 16: | Line 34: | ||
* Buffer : 2µL | * Buffer : 2µL | ||
* NarK, NarG, NirB : 1µL | * NarK, NarG, NirB : 1µL | ||
| - | * | + | * pSB1C3 : 2µL |
* Ligase : 1µL | * Ligase : 1µL | ||
* H2O : 14µL | * H2O : 14µL | ||
| - | ====''' | + | ===='''4 -Electrophoresis to check the ligation of NarK, NarG, NirB in pSB1C3'''==== |
XiaoJing | XiaoJing | ||
{| | {| | ||
| - | | style="width:350px;border:1px solid black;" |[[]] | + | | style="width:350px;border:1px solid black;" |[[File:Psgel23107.jpg]] |
| style="width:350px;border:1px solid black;vertical-align:top;" | | | style="width:350px;border:1px solid black;vertical-align:top;" | | ||
* Well 1 : 6µL of DNA Ladder | * Well 1 : 6µL of DNA Ladder | ||
| Line 38: | Line 56: | ||
Expected sizes : | Expected sizes : | ||
| - | * | + | * Nar K : 200bp |
| - | * Nar G : | + | * Nar G : 200bp |
| - | * Nir B : | + | * Nir B : 200bp |
{| | {| | ||
| Line 47: | Line 65: | ||
|} | |} | ||
| - | ====''' | + | ===='''5 -Transformation of BBa_K1155004, BBa_K1155005, BBa_K1155006'''==== |
Anaïs | Anaïs | ||
| Line 53: | Line 71: | ||
Protocol : [[Team:Paris_Saclay/Protocols/Bacterial transformation|Bacterial transformation]] | Protocol : [[Team:Paris_Saclay/Protocols/Bacterial transformation|Bacterial transformation]] | ||
| - | ===='''Objective : obtaining | + | ===='''Objective : obtaining BBa_K1155007'''==== |
| - | ===='''1 - Digestion of | + | ===='''1 - Digestion of BBa_I732017 by EcoRI/SpeI'''==== |
XiaoJing | XiaoJing | ||
Used quantities : | Used quantities : | ||
| - | * | + | * BBa_I732017 : 41µL |
* Buffer FD : 5µL | * Buffer FD : 5µL | ||
* EcoRI : 2µL | * EcoRI : 2µL | ||
| Line 67: | Line 85: | ||
We let the digestion at 1h30 at 37°C. | We let the digestion at 1h30 at 37°C. | ||
| - | ===='''2 -Electrophoresis to check the digestion of | + | ===='''2 -Electrophoresis to check the digestion of BBa_I732017 by EcoRI/SpeI'''==== |
XiaoJing | XiaoJing | ||
{| | {| | ||
| - | | style="width:350px;border:1px solid black;" |[[]] | + | | style="width:350px;border:1px solid black;" |[[File:Psgel13107.jpg]] |
| style="width:350px;border:1px solid black;vertical-align:top;" | | | style="width:350px;border:1px solid black;vertical-align:top;" | | ||
* Well 1 : 6µL of DNA Ladder | * Well 1 : 6µL of DNA Ladder | ||
| - | * Well 2 et 3 : 40µL of | + | * Well 2 et 3 : 40µL of BBa_I732017 digested by EcoRI/SpeI+8µL 6X loading dye |
* Gel : 0.8% | * Gel : 0.8% | ||
|} | |} | ||
| Line 81: | Line 99: | ||
Expected sizes : | Expected sizes : | ||
* RBS-LacZ : 3093 bp | * RBS-LacZ : 3093 bp | ||
| - | * | + | * pSB1A2 : 2079 bp |
{| | {| | ||
| Line 88: | Line 106: | ||
|} | |} | ||
| - | ====''' | + | ===='''3 - Gel purification of digestion of RBS-LacZ'''==== |
Xavier | Xavier | ||
| Line 98: | Line 116: | ||
We lost our fragments. We will do the digestion again. | We lost our fragments. We will do the digestion again. | ||
|} | |} | ||
| + | |||
{| border="1" align="center" | {| border="1" align="center" | ||
| Line 104: | Line 123: | ||
|[[Team:Paris_Saclay/Notebook|<big>Back to calendar</big>]] | |[[Team:Paris_Saclay/Notebook|<big>Back to calendar</big>]] | ||
| - | |[[Team:Paris Saclay/Notebook/August/ | + | |[[Team:Paris Saclay/Notebook/August/1|<big>Next day</big>]] |
|} | |} | ||
{{Team:Paris_Saclay/incl_fin}} | {{Team:Paris_Saclay/incl_fin}} | ||
Latest revision as of 01:00, 5 October 2013
Notebook : July 31
Lab work
A - Aerobic/Anaerobic regulation system
Objective : obtaining BBa_K1155004, BBa_K1155005, BBa_K155006
1 -Digestion of pSB1C3 by EcoRI/PstI
Abdou
Used quantities :
- pSB1C3 : 16µL
- Buffer FD : 2µL
- EcoRI FD : 1µL
- PstI FD : 1µL
We let our digestion 1h30 at 37°C.
2 - Inactivation of EcoRI/PstI used for the digestion of pSB1C3
Abdou
Protocol : Ethanol precipitation
3 -Ligation of NarK, NarG, NirB in pSB1C3
XiaoJing
Used quantities :
- Buffer : 2µL
- NarK, NarG, NirB : 1µL
- pSB1C3 : 2µL
- Ligase : 1µL
- H2O : 14µL
4 -Electrophoresis to check the ligation of NarK, NarG, NirB in pSB1C3
XiaoJing
|
|
Expected sizes :
- Nar K : 200bp
- Nar G : 200bp
- Nir B : 200bp
|
We obtain fragments at the right size. We will transform them in DH5α. |
5 -Transformation of BBa_K1155004, BBa_K1155005, BBa_K1155006
Anaïs
Protocol : Bacterial transformation
Objective : obtaining BBa_K1155007
1 - Digestion of BBa_I732017 by EcoRI/SpeI
XiaoJing
Used quantities :
- BBa_I732017 : 41µL
- Buffer FD : 5µL
- EcoRI : 2µL
- SpeI : 2µL
We let the digestion at 1h30 at 37°C.
2 -Electrophoresis to check the digestion of BBa_I732017 by EcoRI/SpeI
XiaoJing
|
|
Expected sizes :
- RBS-LacZ : 3093 bp
- pSB1A2 : 2079 bp
|
We obtain fragments at the right size. We will purify it. |
3 - Gel purification of digestion of RBS-LacZ
Xavier
Protocol : Gel purification
|
We lost our fragments. We will do the digestion again. |
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