Team:Freiburg/plasmids

From 2013.igem.org

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<tr> <th> oligo list </th> </tr>
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<tr> <th colspan="3"> <center> Oligos </center> </th> </tr>
<tr> <th> oligo name </th> <th> Sequence 5'-3' </th> <th> description </th> </tr>
<tr> <th> oligo name </th> <th> Sequence 5'-3' </th> <th> description </th> </tr>
<tr> <td> oIG0000 </td> <td> TGAGCAAGAGGTAAGGG </td> <td> Sequencing Primer </td> </tr>
<tr> <td> oIG0000 </td> <td> TGAGCAAGAGGTAAGGG </td> <td> Sequencing Primer </td> </tr>
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<tr> <td> oIG1029 </td> <td> GCGGCCGCAATTCGAACG </td> <td> H1Promotor-fwd_BBpX334a </td> </tr>
<tr> <td> oIG1029 </td> <td> GCGGCCGCAATTCGAACG </td> <td> H1Promotor-fwd_BBpX334a </td> </tr>
<tr> <td> oIG1030 </td> <td> CACAAGATATATAAAGCCAAGAAATC </td> <td> U6 Promotor-rev_BBpX334a </td> </tr>
<tr> <td> oIG1030 </td> <td> CACAAGATATATAAAGCCAAGAAATC </td> <td> U6 Promotor-rev_BBpX334a </td> </tr>
-
<tr> <td> oIG2000 </td> <td> CAGACCCCGTAGAAAAGATCAAAGGATC </td> <td> Ori1-hU6-CAGenhancer-hSpCas9-fwd_pX334a </td> </tr>
+
<tr> <td> oIG2000 </td> <td> CAGACCCCGTAGAAAAGATCAAAGGATC </td> <td> Ori1-hU6-CAGenhancer-hSpdCas9-fwd_pX334a </td> </tr>
-
<tr> <td> oIG2001 </td> <td> GAAAGCTCTGAGGCACGATAGCGTCCACATCGTAGTCGGAC </td> <td> hSpCas9-H840A-rev_pX334a </td> </tr>
+
<tr> <td> oIG2001 </td> <td> GAAAGCTCTGAGGCACGATAGCGTCCACATCGTAGTCGGAC </td> <td> hSpdCas9-H840A-rev_pX334a </td> </tr>
<tr> <td> oIG2002 </td> <td> GTCCGACTACGATGTGGACGCTATCGTGCCTCAGAGCTTTC </td> <td> H840A-linkerGSAGSAG-KRAB-fwd_pX334a </td> </tr>
<tr> <td> oIG2002 </td> <td> GTCCGACTACGATGTGGACGCTATCGTGCCTCAGAGCTTTC </td> <td> H840A-linkerGSAGSAG-KRAB-fwd_pX334a </td> </tr>
<tr> <td> oIG2003 </td> <td> CTTAGCATCCATGCCGGCGGAGCCTGCTGATCCGGGGCTGTCGCCTCCCAGC </td> <td> H840A-linkerGSAGSAG-KRAB-rev_pX334a </td> </tr>
<tr> <td> oIG2003 </td> <td> CTTAGCATCCATGCCGGCGGAGCCTGCTGATCCGGGGCTGTCGCCTCCCAGC </td> <td> H840A-linkerGSAGSAG-KRAB-rev_pX334a </td> </tr>
Line 167: Line 167:
<tr> <td> oIG2026 </td> <td> AAACGGCACGCTGTTTTGACCTCCATAGAAGACACCGT </td> <td> sticky end BbsI-pKM006 target_CMVmin2-sticky end BbsI-fwd_pX334 </td> </tr>
<tr> <td> oIG2026 </td> <td> AAACGGCACGCTGTTTTGACCTCCATAGAAGACACCGT </td> <td> sticky end BbsI-pKM006 target_CMVmin2-sticky end BbsI-fwd_pX334 </td> </tr>
<tr> <td> oIG2027 </td> <td> TAAAACGGTGTCTTCTATGGAGGTCAAAACAGCGTGCC </td> <td> sticky end BbsI-pKM006 target_CMVmin2-sticky end BbsI-rev_pX334 </td> </tr>
<tr> <td> oIG2027 </td> <td> TAAAACGGTGTCTTCTATGGAGGTCAAAACAGCGTGCC </td> <td> sticky end BbsI-pKM006 target_CMVmin2-sticky end BbsI-rev_pX334 </td> </tr>
-
<tr> <td> oIG2028 </td> <td> CCGGTGCCACCATGTACCCATAC </td> <td> hSpCas9-H840A-fwd_pX334a </td> </tr>
+
<tr> <td> oIG2028 </td> <td> CCGGTGCCACCATGTACCCATAC </td> <td> hSpdCas9-H840A-fwd_pX334a </td> </tr>
-
<tr> <td> oIG2029 </td> <td> CGTAATCTGGAACATCGTATGGGTACATG </td> <td> Ori1-hU6-CAGenhancer-hSpCas9-H840A-rev_pX334a </td> </tr>
+
<tr> <td> oIG2029 </td> <td> CGTAATCTGGAACATCGTATGGGTACATG </td> <td> Ori1-hU6-CAGenhancer-hSpdCas9-H840A-rev_pX334a </td> </tr>
<tr> <td> oIG2030 </td> <td> AAACCAAGGTCGGAGTACTGTCCTCCGACACTAGGT </td> <td> sticky end bsbI-UAS_Zebrafish_Locus_pos58-sticky end bsbI-fwd </td> </tr>
<tr> <td> oIG2030 </td> <td> AAACCAAGGTCGGAGTACTGTCCTCCGACACTAGGT </td> <td> sticky end bsbI-UAS_Zebrafish_Locus_pos58-sticky end bsbI-fwd </td> </tr>
<tr> <td> oIG2031 </td> <td> TAAAACCTAGTGTCGGAGGACAGTACTCCGACCTTG </td> <td> sticky end bsbI-UAS_Zebrafish_Locus_pos58-sticky end bsbI-rev </td> </tr>
<tr> <td> oIG2031 </td> <td> TAAAACCTAGTGTCGGAGGACAGTACTCCGACCTTG </td> <td> sticky end bsbI-UAS_Zebrafish_Locus_pos58-sticky end bsbI-rev </td> </tr>
Line 179: Line 179:
<tr> <td> oIG2037 </td> <td> CACGCGCTAGAAAAAGTTTTGGGACC </td> <td> crRNA (reverse) </td> </tr>
<tr> <td> oIG2037 </td> <td> CACGCGCTAGAAAAAGTTTTGGGACC </td> <td> crRNA (reverse) </td> </tr>
<tr> <td> oIG2038 </td> <td> TAATACGACTCACTATAGGGACCGGTGCCACCATGTACC
<tr> <td> oIG2038 </td> <td> TAATACGACTCACTATAGGGACCGGTGCCACCATGTACC
-
</td> <td> Cas9 with T7 site and Kozak-sequence (forward) </td> </tr>
+
</td> <td> dCas9 with T7 site and Kozak-sequence (forward) </td> </tr>
<tr> <td> oIG2039 </td> <td> AATTGCGGCCGCTCCCCAGC </td> <td> bGH Terminator (reverse) </td> </tr>
<tr> <td> oIG2039 </td> <td> AATTGCGGCCGCTCCCCAGC </td> <td> bGH Terminator (reverse) </td> </tr>
<tr> <td> oIG2040 </td> <td> GCAATAGCATCACAAATTTCACAAATAAAGC </td> <td> SV40 Terminator (reverse) </td> </tr>
<tr> <td> oIG2040 </td> <td> GCAATAGCATCACAAATTTCACAAATAAAGC </td> <td> SV40 Terminator (reverse) </td> </tr>
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<tr> <td> oIG3001 </td> <td> GGCAGCGCCGGCTCCGGCAGCGCCTCCGGCATGGTGAGCAAGGGCGAGGAGG </td> <td> Linker1-mCherry_forw_pMZ333 </td> </tr>
<tr> <td> oIG3001 </td> <td> GGCAGCGCCGGCTCCGGCAGCGCCTCCGGCATGGTGAGCAAGGGCGAGGAGG </td> <td> Linker1-mCherry_forw_pMZ333 </td> </tr>
<tr> <td> oIG3002 </td> <td> TCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATCACTTGTACAGCTCGTCCATGCCGC </td> <td> mCherry-Bb_rev_pMZ333 </td> </tr>
<tr> <td> oIG3002 </td> <td> TCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATCACTTGTACAGCTCGTCCATGCCGC </td> <td> mCherry-Bb_rev_pMZ333 </td> </tr>
-
<tr> <td> oIG3003 </td> <td> TGTCTTTTATTTCAGGTCCCGGATCGAATTGCGGCCGCAGGAGGCGCCACCATGTACCCATACGATGTTCCAGATTACGCTGACAAGAAGTACAGCATCGGCCTG </td> <td> Bb-HA-Cas9_forw_pX334a </td> </tr>
+
<tr> <td> oIG3003 </td> <td> TGTCTTTTATTTCAGGTCCCGGATCGAATTGCGGCCGCAGGAGGCGCCACCATGTACCCATACGATGTTCCAGATTACGCTGACAAGAAGTACAGCATCGGCCTG </td> <td> Bb-HA-dCas9_forw_pX334a </td> </tr>
-
<tr> <td> oIG3004 </td> <td> GCCGGAGGCGCTGCCGGAGCCGGCGCTGCCGTCGCCTCCCAGCTGAGACAG </td> <td> Cas9-Linker1_rev_pX334a </td> </tr>
+
<tr> <td> oIG3004 </td> <td> GCCGGAGGCGCTGCCGGAGCCGGCGCTGCCGTCGCCTCCCAGCTGAGACAG </td> <td> dCas9-Linker1_rev_pX334a </td> </tr>
-
<tr> <td> oIG3005 </td> <td> TGTCTTTTATTTCAGGTCCCGGATCGAATTGCGGCCGCAGGAGGCGCCACCATGTACCCATACGATGTTCCAGATTACGC </td> <td> Bb-HA(-NLS-Cas9)_forw_pMZ333 </td> </tr>
+
<tr> <td> oIG3005 </td> <td> TGTCTTTTATTTCAGGTCCCGGATCGAATTGCGGCCGCAGGAGGCGCCACCATGTACCCATACGATGTTCCAGATTACGC </td> <td> Bb-HA(-NLS-dCas9)_forw_pMZ333 </td> </tr>
<tr> <td> oIG3006 </td> <td> TCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATCAGCTGGCCTCCACTTTTCTCTTCTTTTTGGGGCTCTTGTACAGCTCGTCCATGCCGC </td> <td> mCherry-NLS-Bb_rev_pMZ333 </td> </tr>
<tr> <td> oIG3006 </td> <td> TCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATCAGCTGGCCTCCACTTTTCTCTTCTTTTTGGGGCTCTTGTACAGCTCGTCCATGCCGC </td> <td> mCherry-NLS-Bb_rev_pMZ333 </td> </tr>
<tr> <td> oIG3007 </td> <td> TGTCTTTTATTTCAGGTCCCGGATCGAATTGCGGCCGCAGGAGGCGCCACCATGTACCCATACGATGTTCCAGATTACGCTATGAGAGCTGCCAACCTTTGGCCAAG </td> <td> Bb-HA-ERT2_forw_pMItom </td> </tr>
<tr> <td> oIG3007 </td> <td> TGTCTTTTATTTCAGGTCCCGGATCGAATTGCGGCCGCAGGAGGCGCCACCATGTACCCATACGATGTTCCAGATTACGCTATGAGAGCTGCCAACCTTTGGCCAAG </td> <td> Bb-HA-ERT2_forw_pMItom </td> </tr>
-
<tr> <td> oIG3008 </td> <td> GGACGCTTCGACCTTGCGCTTTTTCTTCGGCGAGACTGTGGCAGGGAAACCCTCTG </td> <td> ERT2-NLS(-Cas9)_rev_pMItom </td> </tr>
+
<tr> <td> oIG3008 </td> <td> GGACGCTTCGACCTTGCGCTTTTTCTTCGGCGAGACTGTGGCAGGGAAACCCTCTG </td> <td> ERT2-NLS(-dCas9)_rev_pMItom </td> </tr>
-
<tr> <td> oIG3009 </td> <td> GGGGAGGCAGAGGGTTTCCCTGCCACAGTCTCGCCGAAGAAAAAGCGCAAGGTC </td> <td> ERT2-NLS(-Cas9)_forw_pX334a </td> </tr>
+
<tr> <td> oIG3009 </td> <td> GGGGAGGCAGAGGGTTTCCCTGCCACAGTCTCGCCGAAGAAAAAGCGCAAGGTC </td> <td> ERT2-NLS(-dCas9)_forw_pX334a </td> </tr>
<tr> <td> oIG3010 </td> <td> GCTGGCCTCCACTTTTCTCTTCTTTTTGGGGCTCTTGTACAGCTCGTCCATGCCGC </td> <td> mCherry-NLS3'_rev_pMZ333 </td> </tr>
<tr> <td> oIG3010 </td> <td> GCTGGCCTCCACTTTTCTCTTCTTTTTGGGGCTCTTGTACAGCTCGTCCATGCCGC </td> <td> mCherry-NLS3'_rev_pMZ333 </td> </tr>
<tr> <td> oIG3011 </td> <td> AGCCCCAAAAAGAAGAGAAAAGTGGAGGCCAGCATGAGAGCTGCCAACCTTTGGCCAAG </td> <td> NLS3'-ERT2_forw_pMItom </td> </tr>
<tr> <td> oIG3011 </td> <td> AGCCCCAAAAAGAAGAGAAAAGTGGAGGCCAGCATGAGAGCTGCCAACCTTTGGCCAAG </td> <td> NLS3'-ERT2_forw_pMItom </td> </tr>
Line 204: Line 204:
<tr> <td> oIG4000 </td> <td> GATATGGCGGGGGAACAGGGG </td> <td> mCherry-fwd_pMZ700 </td> </tr>
<tr> <td> oIG4000 </td> <td> GATATGGCGGGGGAACAGGGG </td> <td> mCherry-fwd_pMZ700 </td> </tr>
<tr> <td> oIG4001 </td> <td> GCCGCTGCCGGCGCCGCTGCCGGCGCTGCCCTTGTACAGCTCGTCCATGCCGC </td> <td> mCherry-rev_pMZ700/pMZ701 </td> </tr>
<tr> <td> oIG4001 </td> <td> GCCGCTGCCGGCGCCGCTGCCGGCGCTGCCCTTGTACAGCTCGTCCATGCCGC </td> <td> mCherry-rev_pMZ700/pMZ701 </td> </tr>
-
<tr> <td> oIG4002 </td> <td> GGCAGCGCCGGCAGCGGCGCCGGCAGCGGCGACAAGAAGTACAGCATCGGCCTG </td> <td> cas9-fwd_pMZ1025 </td> </tr>
+
<tr> <td> oIG4002 </td> <td> GGCAGCGCCGGCAGCGGCGCCGGCAGCGGCGACAAGAAGTACAGCATCGGCCTG </td> <td> dCas9-fwd_pMZ1025 </td> </tr>
-
<tr> <td> oIG4003 </td> <td> GTCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATTAGTCGCCTCCCAGCTGAGACAG </td> <td> cas9-rev_pMZ1025 </td> </tr>
+
<tr> <td> oIG4003 </td> <td> GTCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATTAGTCGCCTCCCAGCTGAGACAG </td> <td> dCas9-rev_pMZ1025 </td> </tr>
<tr> <td> oIG4004 </td> <td> GTTATTGGGGCTTTCTGTTTCTTGCAAATCC </td> <td> mCherry-fwd_pMU701 </td> </tr>
<tr> <td> oIG4004 </td> <td> GTTATTGGGGCTTTCTGTTTCTTGCAAATCC </td> <td> mCherry-fwd_pMU701 </td> </tr>
-
<tr> <td> oIG4005 </td> <td> GTCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATTACACCTTTCTCTTCTTCTTGGGGCTGTC </td> <td> cas9(with NLS)-rev_pMZ1025 </td> </tr>
+
<tr> <td> oIG4005 </td> <td> GTCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATTACACCTTTCTCTTCTTCTTGGGGCTGTC </td> <td> dCas9(with NLS)-rev_pMZ1025 </td> </tr>
-
<tr> <td> oIG4006 </td> <td> TCGAAGCTTGGGCTGCAGGTCGACTCTAGATTACACCTTTCTCTTCTTCTTGGGGCTGTCGCCTCCCAGCTGAGACAG </td> <td> cas9(with NLS)-rev_pIG4004 and pIG4005 </td> </tr>
+
<tr> <td> oIG4006 </td> <td> TCGAAGCTTGGGCTGCAGGTCGACTCTAGATTACACCTTTCTCTTCTTCTTGGGGCTGTCGCCTCCCAGCTGAGACAG </td> <td> dCas9(with NLS)-rev_pIG4004 and pIG4005 </td> </tr>
<tr> <td> oIG5000 </td> <td> TGCCTGAAATCACTTTTTTTCAGGTTGGACCGGTGCCACCTCGCGAATGTACCCATACGATGTTCCAGATTACG </td> <td> Backbone-Nru1-HA_for_pX334a </td> </tr>
<tr> <td> oIG5000 </td> <td> TGCCTGAAATCACTTTTTTTCAGGTTGGACCGGTGCCACCTCGCGAATGTACCCATACGATGTTCCAGATTACG </td> <td> Backbone-Nru1-HA_for_pX334a </td> </tr>
<tr> <td> oIG5001 </td> <td> GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGGATCCATGGCCGACAAGCAGAAGAACGGC </td> <td> (GGGGS)3_Linker-BamH1-splitC_YFP_for_BBa_K323080 </td> </tr>
<tr> <td> oIG5001 </td> <td> GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGGATCCATGGCCGACAAGCAGAAGAACGGC </td> <td> (GGGGS)3_Linker-BamH1-splitC_YFP_for_BBa_K323080 </td> </tr>
Line 220: Line 220:
<tr> <td> oIG5011 </td> <td> CTTTAATAGTGGACTCTTGTTCCAAACTGGAAC </td> <td> forward - pX334a backbone amplification (Part2) </td> </tr>
<tr> <td> oIG5011 </td> <td> CTTTAATAGTGGACTCTTGTTCCAAACTGGAAC </td> <td> forward - pX334a backbone amplification (Part2) </td> </tr>
<tr> <td> oIG5012 </td> <td> GGTGGCACCGGTCCAACCTG </td> <td> reverse - pX334a backbone amplification (Part2) </td> </tr>
<tr> <td> oIG5012 </td> <td> GGTGGCACCGGTCCAACCTG </td> <td> reverse - pX334a backbone amplification (Part2) </td> </tr>
-
<tr> <td> oIG5013 </td> <td> ACTGCCTCCGCCACCACTGCCACCGCCTCCGTCGCCTCCCAGCTGAGACAG </td> <td> (GGGGS)3_Linker-hCas9_rev_pX334a </td> </tr>
+
<tr> <td> oIG5013 </td> <td> ACTGCCTCCGCCACCACTGCCACCGCCTCCGTCGCCTCCCAGCTGAGACAG </td> <td> (GGGGS)3_Linker-dCas9_rev_pX334a </td> </tr>
<tr> <td> oIG5014 </td> <td> GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGGATCCATGGAGAACACTGAAAACTCAGTGGATTC </td> <td> (GGGGS)3_Linker-BamH1-Caspase3_for_pMK31 </td> </tr>
<tr> <td> oIG5014 </td> <td> GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGGATCCATGGAGAACACTGAAAACTCAGTGGATTC </td> <td> (GGGGS)3_Linker-BamH1-Caspase3_for_pMK31 </td> </tr>
<tr> <td> oIG5015 </td> <td> AAGTTAGTAGCTCCGCTTCCGCTGGCCTCCACCTTTCTCTTCTTCTTGGGGCTGTCGACATGATGATGATGATGATGGTGATAAAAATAGAGTTC </td> <td> P2A(first 20bp)-NLS-Sal1-Caspase3_rev_pMK31 </td> </tr>
<tr> <td> oIG5015 </td> <td> AAGTTAGTAGCTCCGCTTCCGCTGGCCTCCACCTTTCTCTTCTTCTTGGGGCTGTCGACATGATGATGATGATGATGGTGATAAAAATAGAGTTC </td> <td> P2A(first 20bp)-NLS-Sal1-Caspase3_rev_pMK31 </td> </tr>
-
<tr> <td> oIG5016 </td> <td> CTTAGCGGCAGCTTCCTTAGCGGCAGCTTCGTCGCCTCCCAGCTGAGACAG </td> <td> (EAAAK)3_Linker-hCas9_rev_pX334a </td> </tr>
+
<tr> <td> oIG5016 </td> <td> CTTAGCGGCAGCTTCCTTAGCGGCAGCTTCGTCGCCTCCCAGCTGAGACAG </td> <td> (EAAAK)3_Linker-dCas9_rev_pX334a </td> </tr>
<tr> <td> oIG5017 </td> <td> GAAGCTGCCGCTAAGGAAGCTGCCGCTAAGGGATCCATGGAGAACACTGAAAACTCAGTGGATTCAAAATC </td> <td> (EAAAK)3_Linker-BamH1-Caspase3_for_pMK31 </td> </tr>
<tr> <td> oIG5017 </td> <td> GAAGCTGCCGCTAAGGAAGCTGCCGCTAAGGGATCCATGGAGAACACTGAAAACTCAGTGGATTCAAAATC </td> <td> (EAAAK)3_Linker-BamH1-Caspase3_for_pMK31 </td> </tr>
<tr> <td> oIG5018 </td> <td> GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGGATCCAGGCAAGCAGCAAAGTTGTCGAAGCC </td> <td> (GGGGS)3_Linker-BamH1-Casp9_for_pKJ42 </td> </tr>
<tr> <td> oIG5018 </td> <td> GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGGATCCAGGCAAGCAGCAAAGTTGTCGAAGCC </td> <td> (GGGGS)3_Linker-BamH1-Casp9_for_pKJ42 </td> </tr>
Line 240: Line 240:
<tr> <td> oIG5032 </td> <td> ACTGCCTCCGCCACCACTGCCACCGCCTCCGTCGACTGATGTTTTAAAGAAAAGTTTTTTCCGGAGG </td> <td> (GGGGS)2_Linker_Sal1_Caspase9(long)_rev_pKJ42 </td> </tr>
<tr> <td> oIG5032 </td> <td> ACTGCCTCCGCCACCACTGCCACCGCCTCCGTCGACTGATGTTTTAAAGAAAAGTTTTTTCCGGAGG </td> <td> (GGGGS)2_Linker_Sal1_Caspase9(long)_rev_pKJ42 </td> </tr>
<tr> <td> oIG5033 </td> <td> </td> <td> </td> </tr>
<tr> <td> oIG5033 </td> <td> </td> <td> </td> </tr>
-
<tr> <td> oIG5034 </td> <td> GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGACAAGAAGTACAGCATCGGCCTGG </td> <td> (GGGGS)2_Linker-hCas9-NLS_for_pX334a </td> </tr>
+
<tr> <td> oIG5034 </td> <td> GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGACAAGAAGTACAGCATCGGCCTGG </td> <td> (GGGGS)2_Linker-dCas9-NLS_for_pX334a </td> </tr>
-
<tr> <td> oIG5035 </td> <td> CTTCAGCAGGCTGAAGTTAGTAGCTCCGCTTCCAGCGTAATCTGGAACATCGTATGGGTACATGCTGGCCTCCACCTTTCTCTTCTTC </td> <td> P2A(first 33bp)-HA-hCas9-NLS_rev_pX334a </td> </tr>
+
<tr> <td> oIG5035 </td> <td> CTTCAGCAGGCTGAAGTTAGTAGCTCCGCTTCCAGCGTAATCTGGAACATCGTATGGGTACATGCTGGCCTCCACCTTTCTCTTCTTC </td> <td> P2A(first 33bp)-HA-dCas9-NLS_rev_pX334a </td> </tr>
<tr> <td> oIG6000 </td> <td> TCGCTAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGAGCAGCTAGCTAGTTATTAATAGTAATCAATTACGGGGTCATTAGTTC </td> <td> pCMVfor-psB1C3 </td> </tr>
<tr> <td> oIG6000 </td> <td> TCGCTAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGAGCAGCTAGCTAGTTATTAATAGTAATCAATTACGGGGTCATTAGTTC </td> <td> pCMVfor-psB1C3 </td> </tr>
<tr> <td> oIG6001 </td> <td> CGAGCGGTCCGCGGAACCAGCGCTACCGGACTGCCATTGCTCCGGCTGATCTGACGGTTCACTAAACCAGCTC </td> <td> pCMVrev-eGFP </td> </tr>
<tr> <td> oIG6001 </td> <td> CGAGCGGTCCGCGGAACCAGCGCTACCGGACTGCCATTGCTCCGGCTGATCTGACGGTTCACTAAACCAGCTC </td> <td> pCMVrev-eGFP </td> </tr>
Line 276: Line 276:
<tr> <td> oig6038 </td> <td> AAACGTTCAAGTCGCACAGGCCGCTCCCGCTCCCGT </td> <td> target eCFP fw </td> </tr>
<tr> <td> oig6038 </td> <td> AAACGTTCAAGTCGCACAGGCCGCTCCCGCTCCCGT </td> <td> target eCFP fw </td> </tr>
<tr> <td> oig6039 </td> <td> TAAAACGGGAGCGGGAGCGGCCTGTGCGACTTGAAC </td> <td> target eCFP rv </td> </tr>
<tr> <td> oig6039 </td> <td> TAAAACGGGAGCGGGAGCGGCCTGTGCGACTTGAAC </td> <td> target eCFP rv </td> </tr>
-
<tr> <td> oIG8002 </td> <td> GCCGGCGGAGCCTGCTGATCCGGGGCTGTCGCCTCCCAGC </td> <td> Cas9_GSAGSAG_rev </td> </tr>
+
<tr> <td> oIG8002 </td> <td> GCCGGCGGAGCCTGCTGATCCGGGGCTGTCGCCTCCCAGC </td> <td> dCas9_GSAGSAG_rev </td> </tr>
<tr> <td> oIG8005 </td> <td> GGACGCTTCGACCTTGCGCTTTTTC </td> <td> NLS1_pX334_rev </td> </tr>
<tr> <td> oIG8005 </td> <td> GGACGCTTCGACCTTGCGCTTTTTC </td> <td> NLS1_pX334_rev </td> </tr>
-
<tr> <td> oIG8006 </td> <td> GGATCAGCAGGCTCCGCCGGCGACAAGAAGTACAGCATCGGCCTG </td> <td> Cas9_GSAGSAG_fw </td> </tr>
+
<tr> <td> oIG8006 </td> <td> GGATCAGCAGGCTCCGCCGGCGACAAGAAGTACAGCATCGGCCTG </td> <td> dCas9_GSAGSAG_fw </td> </tr>
<tr> <td> oIG8007 </td> <td> GGTGCTGGTATGACAAG </td> <td> G9a_seq_fw_pGEX2T </td> </tr>
<tr> <td> oIG8007 </td> <td> GGTGCTGGTATGACAAG </td> <td> G9a_seq_fw_pGEX2T </td> </tr>
<tr> <td> oIG8008 </td> <td> GATGTTGCCATAGTAACGG </td> <td> G9a_seq_rev_pGEX2T </td> </tr>
<tr> <td> oIG8008 </td> <td> GATGTTGCCATAGTAACGG </td> <td> G9a_seq_rev_pGEX2T </td> </tr>
Line 297: Line 297:
<tr> <td> oIG8023 </td> <td> GCTGGTAGTGCTGGTTCCGCGTACAGCCGCGAGAATGTACCCATCCCCTGTGTC </td> <td> phyB(overhang)_g9a for </td> </tr>
<tr> <td> oIG8023 </td> <td> GCTGGTAGTGCTGGTTCCGCGTACAGCCGCGAGAATGTACCCATCCCCTGTGTC </td> <td> phyB(overhang)_g9a for </td> </tr>
<tr> <td> oIG8024 </td> <td> CTCTAGATCACACCTTCCGCTTTTTCTTGGGGGTGTTGATGGGGGGCAGGGA </td> <td> phyB(overhang)_g9a rev </td> </tr>
<tr> <td> oIG8024 </td> <td> CTCTAGATCACACCTTCCGCTTTTTCTTGGGGGTGTTGATGGGGGGCAGGGA </td> <td> phyB(overhang)_g9a rev </td> </tr>
-
<tr> <td> oIG9100 </td> <td> TCATATCCGCGGCATGTACCCATACGATGTTCCAGATTACG </td> <td> cas9 fw incl. HA tag and NLS </td> </tr>
+
<tr> <td> oIG9100 </td> <td> TCATATCCGCGGCATGTACCCATACGATGTTCCAGATTACG </td> <td> dCas9 fw incl. HA tag and NLS </td> </tr>
-
<tr> <td> oIG9191 </td> <td> GATATTGGTACCCATGCCTGCTATTCTCTTCCCAATCCTC </td> <td> cas9 rv incl. Bgh terminator </td> </tr>
+
<tr> <td> oIG9191 </td> <td> GATATTGGTACCCATGCCTGCTATTCTCTTCCCAATCCTC </td> <td> dCas9 rv incl. Bgh terminator </td> </tr>
<tr> <td> oIG4100F </td> <td> GCTAGCTAGTTATTAATAGTAATCAATTACGGG </td> <td> wird nachgetragen </td> </tr>
<tr> <td> oIG4100F </td> <td> GCTAGCTAGTTATTAATAGTAATCAATTACGGG </td> <td> wird nachgetragen </td> </tr>
<tr> <td> oIG4100R </td> <td> GAATTCGATCTGACGGTTCACTAAAC </td> <td> </td> </tr>
<tr> <td> oIG4100R </td> <td> GAATTCGATCTGACGGTTCACTAAAC </td> <td> </td> </tr>
Line 327: Line 327:
<tr> <td> crRNA tetO 1 R </td> <td> AAACACTCGACTTTCACTTTTCTCTATCACTGATGT </td> <td> </td> </tr>
<tr> <td> crRNA tetO 1 R </td> <td> AAACACTCGACTTTCACTTTTCTCTATCACTGATGT </td> <td> </td> </tr>
<tr> <td> crRNA tetO 2 F </td> <td> TAAAACCTCCCTATCAGTGATAGAGAAAAGTGAAAG </td> <td> </td> </tr>
<tr> <td> crRNA tetO 2 F </td> <td> TAAAACCTCCCTATCAGTGATAGAGAAAAGTGAAAG </td> <td> </td> </tr>
-
<tr> <td> crRNA tetO 2 R </td> <td> AAACCTTTCACTTTTCTCTATCACTGATAGGGAGGT </td> <td> </td> </tr>
+
<tr> <td> oIG9000 </td> <td> AGGAGGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGGGCTC </td> <td> ELISA CRISPR/Cas9 for EMX1 sequence, biotinylated </td> </tr>
 +
<tr> <td> oIG9001 </td> <td> GAGCCCTTCTTCTTCTGCTCGGACTCAGGCCCTTCCTCCT </td> <td> ELISA CRISPR/Cas9 for EMX1 sequence </td> </tr>
 +
<tr> <td> oIG9002 </td> <td> CAGAAGCTGGAGGAGGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGGGCTC </td> <td> ELISA CRISPR/Cas9 for EMX1 sequence, biotinylated </td> </tr>
 +
<tr> <td> oIG9003 </td> <td> GAGCCCTTCTTCTTCTGCTCGGACTCAGGCCCTTCCTCCTCCAGCTTCTG </td> <td> ELISA CRISPR/Cas9 for EMX1 sequence </td> </tr>
 +
<tr> <td> oIG9004 </td> <td> CAGAAGCTGGAGGAGGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGGGCTCCCATCACATC </td> <td> ELISA CRISPR/Cas9 for EMX1 sequence, biotinylated </td> </tr>
 +
<tr> <td> oIG9005 </td> <td> GATGTGATGGGAGCCCTTCTTCTTCTGCTCGGACTCAGGCCCTTCCTCCTCCAGCTTCTG </td> <td> ELISA CRISPR/Cas9 for EMX1 sequence </td> </tr>
 +
<tr> <td> oIG9006 </td> <td> GGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGTTTTAGAGCTATGCTGTTTTGAATGGTC </td> <td> forward primer for the insertion of the EMX1 </td> </tr>
 +
<tr> <td> oIG9007 </td> <td> TTCTTCTTCTGCTCGGACTCAGGCCCTTCCGTTTTGGGACCATTCAAAACAGCATAGC </td> <td> reverse primer for the insertion of the EMX1 </td> </tr>
 +
<tr> <td> oIG9008 </td> <td> GGGCTTGTACTCGGTCATGGTAAGCTTCAGCTGCTCGAGATCTAGATGGATGCAGGTCG </td> <td> reverse primer for the insertion of the EMX1 </td> </tr>
 +
<tr> <td> oIG9009 </td> <td> CGACCTGCATCCATCTAGATCTCGAGCAGCTGAAGCTTACC </td> <td> forward primer for the insertion of the EMX1 </td> </tr>
 +
<tr> <td> oIG9010 </td> <td> CAG CAT CGG CCT GGA CAT CGG C </td> <td> Site directed mutagenesis pcr reverse primer to reestablish the endonuclease activity by activating one inactivated nicase </td> </tr>
 +
<tr> <td> oIG9011 </td> <td> GCC GAT GTC CAG GCC GAT GCT G </td> <td> Site directed mutagenesis pcr reverse primer to reestablish the endonuclease activity by activating one inactivated nicase </td> </tr>
 +
<tr> <td> oIG9012 </td> <td> CAGAAGCTGGATTAAAAGTCGGCTGGTAGCGGGGAGGATCGGGGCTCCCATCACATC </td> <td> human VEGFA locus 1_VZ-8_fwd_pKM600, biotinylated </td> </tr>
 +
<tr> <td> oIG9013 </td> <td> GATGTGATGGGAGCCCCGATCCTCCCCGCTACCAGCCGACTTTTAATCCAGCTTCTG </td> <td> human VEGFA locus 1_VZ-8_fwd_pKM600 </td> </tr>
 +
<tr> <td> oIG9015 </td> <td> CAGAAGCTGGAGACCTGCTTTTGGGGGTGACCGCCGGAGCGGGGCTCCCATCACATC </td> <td> human VEGFA locus 3_VZ+434b_fwd_pKM600, biotinylated </td> </tr>
 +
<tr> <td> oIG9016 </td> <td> GATGTGATGGGAGCCCCGCTCCGGCGGTCACCCCCAAAAGCAGGTCTCCAGCTTCTG </td> <td> human VEGFA locus 3_VZ+434b_fwd_pKM600 </td> </tr>
 +
<tr> <td> oIG9018 </td> <td> CAGAAGCTGGACACGACTTCTTCAAGTCCGCCATGCCCGAGGGCTCCCATCACATC </td> <td> +750 Target, Forward, biotinylated </td> </tr>
 +
<tr> <td> oIG9019 </td> <td> GATGTGATGGGAGCCCTCGGGCATGGCGGACTTGAAGAAGTCGTGTCCAGCTTCTG </td> <td> +750 Target, Forward  </td> </tr>
 +
<tr> <td> oIG9024 </td> <td> CAGAAGCTGGAAGAGCTCGTTTAGTGAACCGTCAGATCGCCGGGCTCCCATCACATC </td> <td> CMVmin 1 Target, biotinylated </td> </tr>
 +
<tr> <td> oIG9025 </td> <td> GATGTGATGGGAGCCCGGCGATCTGACGGTTCACTAAACGAGCTCTTCCAGCTTCTG </td> <td> CMVmin 1 Target </td> </tr>
 +
<tr> <td> oIG9041 </td> <td> CAGAAGCTGGAGTGTGCAGACGGCAGTCACTAGGGGGCGCTGGGCTCCCATCACATC </td> <td> human VEGFA locus2, biotinylated </td> </tr>
 +
<tr> <td> oIG9042 </td> <td> GATGTGATGGGAGCCCAGCGCCCCCTAGTGACTGCCGTCTGCACACTCCAGCTTCTG </td> <td> human VEGFA locus 2 </td> </tr>
 +
<tr> <td> oIG9043 </td> <td> CAGAAGCTGGACGTCTATATCACCGCCGACAAGCAGAAGAAGGGCTCCCATCACATC </td> <td> target_nt950 pIG9003 fwd, biotinylated </td> </tr>
 +
<tr> <td> oIG9044 </td> <td> GATGTGATGGGAGCCCTTCTTCTGCTTGTCGGCGGTGATATAGACGTCCAGCTTCTG </td> <td> target_nt950 pIG9003rev </td> </tr>
 +
 
</table>
</table>
<p></p>
<p></p>
<table>
<table>
-
<tr> <th> plasmid list </th> </tr>
+
<tr> <th colspan="5"> <center> Plasmids </center> </th> </tr>
<tr> <th> plasmid name </th> <th> Description </th> <th> Backbone </th> <th> Resistance </th> <th> Reference </th> </tr>
<tr> <th> plasmid name </th> <th> Description </th> <th> Backbone </th> <th> Resistance </th> <th> Reference </th> </tr>
-
<tr> <td> pIG0001 </td> <td> Cas9, RFC 25 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> pX33a und pIG2004 </td> </tr>
+
<tr> <td> pIG0001 </td> <td> dCas9, RFC 25 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> pX33a und pIG2004 </td> </tr>
<tr> <td> pIG0002 </td> <td> pSV40, RFC 25 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0002 </td> <td> pSV40, RFC 25 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0003 </td> <td> SV40, RFC 25 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0003 </td> <td> SV40, RFC 25 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
Line 354: Line 378:
<tr> <td> pIG0019 </td> <td> CMV </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> CMV was used from parts regestry (BBa_K747096, RFC10) </td> </tr>
<tr> <td> pIG0019 </td> <td> CMV </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> CMV was used from parts regestry (BBa_K747096, RFC10) </td> </tr>
<tr> <td> pIG0020 </td> <td> BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> BGH was amplified from pGR2 with oIG0049 + oIG0050 and ligated into pSB1C3 via Gibson assembly. </td> </tr>
<tr> <td> pIG0020 </td> <td> BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> BGH was amplified from pGR2 with oIG0049 + oIG0050 and ligated into pSB1C3 via Gibson assembly. </td> </tr>
-
<tr> <td> pIG0021 a </td> <td> NLS-Cas9 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0018 and pIG0001 (RFC25) </td> </tr>
+
<tr> <td> pIG0021 a </td> <td> NLS-dCas9 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0018 and pIG0001 (RFC25) </td> </tr>
<tr> <td> pIG0022 </td> <td> CMV-HA </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0017 and pIG0019 (RFC25) </td> </tr>
<tr> <td> pIG0022 </td> <td> CMV-HA </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0017 and pIG0019 (RFC25) </td> </tr>
<tr> <td> pIG0023 </td> <td> SV40-HA </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0003 and pIG0017 (RFC25) </td> </tr>
<tr> <td> pIG0023 </td> <td> SV40-HA </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0003 and pIG0017 (RFC25) </td> </tr>
<tr> <td> pIG0024 </td> <td> NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0018 and pIG0020 (RFC25) </td> </tr>
<tr> <td> pIG0024 </td> <td> NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0018 and pIG0020 (RFC25) </td> </tr>
-
<tr> <td> pIG0025 </td> <td> CMV-HA-NLS-Cas9 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0022 and pIG0021 (RFC25) </td> </tr>
+
<tr> <td> pIG0025 </td> <td> CMV-HA-NLS-dCas9 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0022 and pIG0021 (RFC25) </td> </tr>
-
<tr> <td> pIG0026 </td> <td> SV40-HA-NLS-Cas9 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0023 and pIG0021 (RFC25) </td> </tr>
+
<tr> <td> pIG0026 </td> <td> SV40-HA-NLS-dCas9 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0023 and pIG0021 (RFC25) </td> </tr>
-
<tr> <td> pIG0027 </td> <td> CMV-HA-NLS-Cas9-Linker (3AS) </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0025 and pIG0029 (RFC25) </td> </tr>
+
<tr> <td> pIG0027 </td> <td> CMV-HA-NLS-dCas9-Linker (3AS) </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0025 and pIG0029 (RFC25) </td> </tr>
-
<tr> <td> pIG0028 </td> <td> CMV-HA-NLS-Cas9-Linker (7AS) </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0025 and pIG0030 (RFC25) </td> </tr>
+
<tr> <td> pIG0028 </td> <td> CMV-HA-NLS-dCas9-Linker (7AS) </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0025 and pIG0030 (RFC25) </td> </tr>
-
<tr> <td> pIG0029 </td> <td> SV40-HA-NLS-Cas9-Linker(3AS) </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0026 and pIG0029 (RFC25) </td> </tr>
+
<tr> <td> pIG0029 </td> <td> SV40-HA-NLS-dCas9-Linker(3AS) </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0026 and pIG0029 (RFC25) </td> </tr>
-
<tr> <td> pIG0030 </td> <td> SV40-HA-NLS-Cas9-Linker(7AS) </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0026 and pIG0030 (RFC25) </td> </tr>
+
<tr> <td> pIG0030 </td> <td> SV40-HA-NLS-dCas9-Linker(7AS) </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of pIG0026 and pIG0030 (RFC25) </td> </tr>
<tr> <td> pIG0031 </td> <td> Linker 3 AS </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of annealed oIG0045+46 and pSB1C3 RFC25 </td> </tr>
<tr> <td> pIG0031 </td> <td> Linker 3 AS </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of annealed oIG0045+46 and pSB1C3 RFC25 </td> </tr>
<tr> <td> pIG0032 </td> <td> Linker (7 AS) </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of annealed oIG0051+52 and pSB1C3 RFC25 </td> </tr>
<tr> <td> pIG0032 </td> <td> Linker (7 AS) </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> Ligation of annealed oIG0051+52 and pSB1C3 RFC25 </td> </tr>
-
<tr> <td> pIG0033 </td> <td> HA-NLS-Cas9-Linker (3AS) </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0033 </td> <td> HA-NLS-dCas9-Linker (3AS) </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0034 </td> <td> SV40 im 10er Standard </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0034 </td> <td> SV40 im 10er Standard </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0035 </td> <td> BGH im 10er Standard </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0035 </td> <td> BGH im 10er Standard </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0036 </td> <td> HA-NLS-Cas9-Linker (3AS)-KRAB </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0036 </td> <td> HA-NLS-dCas9-Linker (3AS)-KRAB </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0037 </td> <td> HA-NLS-Cas9-Linker (3AS)-G9a </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0037 </td> <td> HA-NLS-dCas9-Linker (3AS)-G9a </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0038 </td> <td> HA-NLS-Cas9-Linker (3AS)-VP16 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0038 </td> <td> HA-NLS-dCas9-Linker (3AS)-VP16 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0039 </td> <td> HA-NLS-Cas9-Linker (3AS)-KRAB-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0039 </td> <td> HA-NLS-dCas9-Linker (3AS)-KRAB-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0040 </td> <td> HA-NLS-Cas9-Linker (3AS)-G9a-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0040 </td> <td> HA-NLS-dCas9-Linker (3AS)-G9a-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0041 </td> <td> HA-NLS-Cas9-Linker (3AS)-VP16-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0041 </td> <td> HA-NLS-dCas9-Linker (3AS)-VP16-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0042 </td> <td> SV40-HA-NLS-Cas9-Linker (3AS)-KRAB-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0042 </td> <td> SV40-HA-NLS-dCas9-Linker (3AS)-KRAB-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0043 </td> <td> SV40-HA-NLS-Cas9-Linker (3AS)-G9a-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0043 </td> <td> SV40-HA-NLS-dCas9-Linker (3AS)-G9a-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0044 </td> <td> SV40-HA-NLS-Cas9-Linker (3AS)-VP16-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0044 </td> <td> SV40-HA-NLS-dCas9-Linker (3AS)-VP16-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0045 </td> <td> CMV-HA-NLS-Cas9-Linker (3AS)-KRAB-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0045 </td> <td> CMV-HA-NLS-dCas9-Linker (3AS)-KRAB-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0046 </td> <td> CMV-HA-NLS-Cas9-Linker (3AS)-G9a-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0046 </td> <td> CMV-HA-NLS-dCas9-Linker (3AS)-G9a-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0047 </td> <td> CMV-HA-NLS-Cas9-Linker (3AS)-VP16-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0047 </td> <td> CMV-HA-NLS-dCas9-Linker (3AS)-VP16-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0048 </td> <td> pSV40-PhyB </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0048 </td> <td> pSV40-PhyB </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0049 </td> <td> pSV40-COP1 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0049 </td> <td> pSV40-COP1 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
Line 395: Line 419:
<tr> <td> pIG0060 </td> <td> CMV-COP1-L3-VP16-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0060 </td> <td> CMV-COP1-L3-VP16-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0061 </td> <td> CMV-COP1-L3-KRAB-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG0061 </td> <td> CMV-COP1-L3-KRAB-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0062 </td> <td> CMV-HA-NLS-Cas9-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0062 </td> <td> CMV-HA-NLS-dCas9-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0063 </td> <td> SV40-HA-NLS-Cas9-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0063 </td> <td> SV40-HA-NLS-dCas9-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0064 </td> <td> SV40-HA-NLS-Cas9-Linker 3AS-Uvr8 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0064 </td> <td> SV40-HA-NLS-dCas9-Linker 3AS-Uvr8 </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0065 </td> <td> SV40-HA-NLS-Cas9-Linker 3AS-Piff </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0065 </td> <td> SV40-HA-NLS-dCas9-Linker 3AS-Piff </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0066 </td> <td> SV40-HA-NLS-Cas9-Linker 3AS-Uvr8-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0066 </td> <td> SV40-HA-NLS-dCas9-Linker 3AS-Uvr8-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
-
<tr> <td> pIG0067 </td> <td> SV40-HA-NLS-Cas9-Linker 3AS-Piff-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
+
<tr> <td> pIG0067 </td> <td> SV40-HA-NLS-dCas9-Linker 3AS-Piff-NLS-BGH </td> <td> pSB1C3 </td> <td> Chloramph. </td> <td> </td> </tr>
<tr> <td> pIG1000 </td> <td> Siehe Liste unter Ornder "Aktivierung" </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG1000 </td> <td> Siehe Liste unter Ornder "Aktivierung" </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG1001 </td> <td> Siehe Liste unter Ornder "Aktivierung" </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG1001 </td> <td> Siehe Liste unter Ornder "Aktivierung" </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG1002 </td> <td> Siehe Liste unter Ornder "Aktivierung" </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG1002 </td> <td> Siehe Liste unter Ornder "Aktivierung" </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG1003 </td> <td> Siehe Liste unter Ornder "Aktivierung" </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG1003 </td> <td> Siehe Liste unter Ornder "Aktivierung" </td> <td> </td> <td> </td> <td> </td> </tr>
-
<tr> <td> pIG2000 </td> <td> hU6 - precrRNA-site - CAG - hCas9, D10A </td> <td> pX334a </td> <td> Amp, Puro </td> <td>  Multiplex Genome Engineering Using CRISPR/Cas Systems. Cong et al (Science. 2013 Jan 3. PubMed) </td> </tr>
+
<tr> <td> pIG2000 </td> <td> hU6 - precrRNA-site - CAG - dCas9, D10A </td> <td> pX334a </td> <td> Amp, Puro </td> <td> Multiplex Genome Engineering Using CRISPR/Cas Systems. Cong et al (Science. 2013 Jan 3. PubMed) </td> </tr>
<tr> <td> pIG2001 </td> <td> UVR8 - KRAB - NLS </td> <td> pKM102 </td> <td> Amp, Tet </td> <td> </td> </tr>
<tr> <td> pIG2001 </td> <td> UVR8 - KRAB - NLS </td> <td> pKM102 </td> <td> Amp, Tet </td> <td> </td> </tr>
<tr> <td> pIG2002 </td> <td> tetO13 - CMVmin - SEAP </td> <td> pKM006 </td> <td> Amp, ColE1 </td> <td> Reporter Plasmid, in combination with pSAM200: constitutively high expression of SEAP </td> </tr>
<tr> <td> pIG2002 </td> <td> tetO13 - CMVmin - SEAP </td> <td> pKM006 </td> <td> Amp, ColE1 </td> <td> Reporter Plasmid, in combination with pSAM200: constitutively high expression of SEAP </td> </tr>
<tr> <td> pIG2003 </td> <td> tetR - VP16 </td> <td> pSAM200 </td> <td> Amp, ColE1 </td> <td> Cis-activating fusion-protein of the used tetR-System </td> </tr>
<tr> <td> pIG2003 </td> <td> tetR - VP16 </td> <td> pSAM200 </td> <td> Amp, ColE1 </td> <td> Cis-activating fusion-protein of the used tetR-System </td> </tr>
-
<tr> <td> pIG2004 </td> <td> hU6 - precrRNA-site - CAG - hCas9, D10A, H840A - KRAB </td> <td> px334a </td> <td> Amp, Puro </td> <td> Zhang-plasmid, containing a H840A mutation, induced by side-directed mutagenesis (oIG2000 & 2001 / 2002 & 2003). Furtherly containing a KRAB domain, which originated from PCR amplification and subsequent Gibson Cloning of a pKM102 part (oIG2004 & oIG2005) with pX334a. </td> </tr>
+
<tr> <td> pIG2004 </td> <td> hU6 - precrRNA-site - CAG - dCas9, D10A, H840A - KRAB </td> <td> px334a </td> <td> Amp, Puro </td> <td> Zhang-plasmid, containing a H840A mutation, induced by side-directed mutagenesis (oIG2000 & 2001 / 2002 & 2003). Furtherly containing a KRAB domain, which originated from PCR amplification and subsequent Gibson Cloning of a pKM102 part (oIG2004 & oIG2005) with pX334a. </td> </tr>
-
<tr> <td> pIG2005 </td> <td> hU6 - precrRNA-site - CAG - hCas9, D10A, H840A </td> <td> pX334a </td> <td> Amp, Puro </td> <td> Zhang-plasmid, containing a H840A mutation, induced by side-directed mutagenesis (oIG2000-oIG2001, oIG2002-oIG2007). Gibson cloned of three PCR-fragments: oIG2000-oIG2001, oIG2002-oIG2007, oIG2008-oIG2009 </td> </tr>
+
<tr> <td> pIG2005 </td> <td> hU6 - precrRNA-site - CAG - dCas9, D10A, H840A </td> <td> pX334a </td> <td> Amp, Puro </td> <td> Zhang-plasmid, containing a H840A mutation, induced by side-directed mutagenesis (oIG2000-oIG2001, oIG2002-oIG2007). Gibson cloned of three PCR-fragments: oIG2000-oIG2001, oIG2002-oIG2007, oIG2008-oIG2009 </td> </tr>
-
<tr> <td> pIG2006 </td> <td> hU6 - CMVmin-crRNA - HA - NLS - Cas9 - NLS  </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2006 </td> <td> hU6 - CMVmin-crRNA - HA - NLS - dCas9 - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2007 </td> <td> hU6 - CMV-crRNA - HA - NLS - Cas9 - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2007 </td> <td> hU6 - CMV-crRNA - HA - NLS - dCas9 - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2008 </td> <td> hU6 - +230-crRNA - HA - NLS - Cas9 - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2008 </td> <td> hU6 - +230-crRNA - HA - NLS - dCas9 - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2009 </td> <td> hU6 - EMX-crRNA - HA - NLS - Cas9 - NLS  </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2009 </td> <td> hU6 - EMX-crRNA - HA - NLS - dCas9 - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2010 </td> <td> hU6 - CMVmin-crRNA - HA - NLS - Cas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2010 </td> <td> hU6 - CMVmin-crRNA - HA - NLS - dCas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2011 </td> <td> hU6 - CMV-crRNA - HA - NLS - Cas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2011 </td> <td> hU6 - CMV-crRNA - HA - NLS - dCas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2012 </td> <td> hU6 - +230-crRNA - HA - NLS - Cas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2012 </td> <td> hU6 - +230-crRNA - HA - NLS - dCas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2013 </td> <td> hU6 - EMX-crRNA - HA - NLS - Cas9 - KRAB - NLS  </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2013 </td> <td> hU6 - EMX-crRNA - HA - NLS - dCas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2014 </td> <td> hU6 - CMVmin-crRNA - HA - NLS - Cas9_H840A - NLS  </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2014 </td> <td> hU6 - CMVmin-crRNA - HA - NLS - dCas9_H840A - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2015 </td> <td> hU6 - CMV-crRNA - HA - NLS - Cas9_H840A - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2015 </td> <td> hU6 - CMV-crRNA - HA - NLS - dCas9_H840A - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2016 </td> <td> hU6 - +230-crRNA - HA - NLS - Cas9_H840A - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2016 </td> <td> hU6 - +230-crRNA - HA - NLS - dCas9_H840A - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2017 </td> <td> hU6 - EMX-crRNA - HA - NLS - Cas9_H840A - NLS  </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2017 </td> <td> hU6 - EMX-crRNA - HA - NLS - dCas9_H840A - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2018 </td> <td> hU6 - +30-crRNA - HA - NLS - Cas9 - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
+
<tr> <td> pIG2018 </td> <td> hU6 - +30-crRNA - HA - NLS - dCas9 - NLS </td> <td> pX334 </td> <td> Amp </td> <td> - </td> </tr>
-
<tr> <td> pIG2019 </td> <td> hU6 - +30-crRNA - HA - NLS - Cas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> </td> </tr>
+
<tr> <td> pIG2019 </td> <td> hU6 - +30-crRNA - HA - NLS - dCas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> </td> </tr>
-
<tr> <td> pIG2020 </td> <td> hU6 - +30-crRNA - HA - NLS - Cas9_H840A - NLS </td> <td> pX334 </td> <td> Amp </td> <td> </td> </tr>
+
<tr> <td> pIG2020 </td> <td> hU6 - +30-crRNA - HA - NLS - dCas9_H840A - NLS </td> <td> pX334 </td> <td> Amp </td> <td> </td> </tr>
-
<tr> <td> pIG2021 </td> <td> hU6 - Vegf II-crRNA - HA - NLS - Cas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> </td> </tr>
+
<tr> <td> pIG2021 </td> <td> hU6 - Vegf II-crRNA - HA - NLS - dCas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> </td> </tr>
-
<tr> <td> pIG2022 </td> <td> hU6 - Vegf III-crRNA - HA - NLS - Cas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> </td> </tr>
+
<tr> <td> pIG2022 </td> <td> hU6 - Vegf III-crRNA - HA - NLS - dCas9 - KRAB - NLS </td> <td> pX334 </td> <td> Amp </td> <td> </td> </tr>
-
<tr> <td> pIG3001 </td> <td> Cas9-mCherry </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; Cas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333; Assembly was performed using Gibson PCR </td> </tr>
+
<tr> <td> pIG3001 </td> <td> dCas9-mCherry </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333; Assembly was performed using Gibson PCR </td> </tr>
-
<tr> <td> pIG3002 </td> <td> HA-NLS-Cas9-mCherry-NLS </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; HA-NLS-Cas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, the C-terminal NLS (different codon usage) was intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
+
<tr> <td> pIG3002 </td> <td> HA-NLS-dCas9-mCherry-NLS </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; HA-NLS-dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, the C-terminal NLS (different codon usage) was intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
-
<tr> <td> pIG3003 </td> <td> HA-Cas9-mCherry-NLS </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; Cas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, the C-terminal NLS (different codon usage) and HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
+
<tr> <td> pIG3003 </td> <td> HA-dCas9-mCherry-NLS </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, the C-terminal NLS (different codon usage) and HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
-
<tr> <td> pIG3004 </td> <td> HA-NLS-Cas9-mCherry </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; HA-NLS-Cas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333; Assembly was performed using Gibson PCR </td> </tr>
+
<tr> <td> pIG3004 </td> <td> HA-NLS-dCas9-mCherry </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; HA-NLS-dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333; Assembly was performed using Gibson PCR </td> </tr>
-
<tr> <td> pIG3005 </td> <td> HA-ERT2-NLS-Cas9-mCherry-NLS-ERT2 </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; NLS-Cas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the C-terminal NLS (different codon usage) and the HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
+
<tr> <td> pIG3005 </td> <td> HA-ERT2-NLS-dCas9-mCherry-NLS-ERT2 </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; NLS-dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the C-terminal NLS (different codon usage) and the HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
-
<tr> <td> pIG3006 </td> <td> HA-NLS-Cas9-mCherry-NLS-ERT2 </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; HA-NLS-Cas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the C-terminal NLS (different codon usage) was intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
+
<tr> <td> pIG3006 </td> <td> HA-NLS-dCas9-mCherry-NLS-ERT2 </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; HA-NLS-dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the C-terminal NLS (different codon usage) was intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
-
<tr> <td> pIG3007 </td> <td> HA-ERT2-NLS-Cas9-mCherry-NLS </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; NLS-Cas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the C-terminal NLS (different codon usage) and the HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
+
<tr> <td> pIG3007 </td> <td> HA-ERT2-NLS-dCas9-mCherry-NLS </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; NLS-dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the C-terminal NLS (different codon usage) and the HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
-
<tr> <td> pIG3008 </td> <td> HA-Cas9-mCherry-NLS-ERT2 </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; Cas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the C-terminal NLS (different codon usage) and the HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
+
<tr> <td> pIG3008 </td> <td> HA-dCas9-mCherry-NLS-ERT2 </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the C-terminal NLS (different codon usage) and the HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
-
<tr> <td> pIG3009 </td> <td> HA-ERT2-NLS-Cas9-mCherry </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; NLS-Cas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
+
<tr> <td> pIG3009 </td> <td> HA-ERT2-NLS-dCas9-mCherry </td> <td> pMZ333 </td> <td> Amp </td> <td> Backbone was cut out of pMZ333 by NotI and XbaI; NLS-dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR </td> </tr>
-
<tr> <td> pIG3010 </td> <td> - </td> <td> pX334a </td> <td> amp </td> <td> pX334a was digested with PstI to get rid of Cas9 and religated </td> </tr>
+
<tr> <td> pIG3010 </td> <td> - </td> <td> pX334a </td> <td> amp </td> <td> pX334a was digested with PstI to get rid of dCas9 and religated </td> </tr>
<tr> <td> pIG3011 </td> <td> SEAP-Targetsequence I </td> <td> pX334a </td> <td> amp </td> <td> pIG3010 was opened with BbsI and SEAP-Targetsequence I was inserted (oIG3013 + 14) </td> </tr>
<tr> <td> pIG3011 </td> <td> SEAP-Targetsequence I </td> <td> pX334a </td> <td> amp </td> <td> pIG3010 was opened with BbsI and SEAP-Targetsequence I was inserted (oIG3013 + 14) </td> </tr>
<tr> <td> pIG3012 </td> <td> SEAP-Targetsequence II </td> <td> pX334a </td> <td> amp </td> <td> pIG3010 was opened with BbsI and SEAP-Targetsequence II was inserted (oIG3015 + 16) </td> </tr>
<tr> <td> pIG3012 </td> <td> SEAP-Targetsequence II </td> <td> pX334a </td> <td> amp </td> <td> pIG3010 was opened with BbsI and SEAP-Targetsequence II was inserted (oIG3015 + 16) </td> </tr>
Line 443: Line 467:
<tr> <td> pIG4000 </td> <td> oMZ700PhyB (1-605) - mCherry-sv40pA </td> <td> </td> <td> bla,ColE1 </td> <td> mCherry was first PCR amplified from pMZ300 with oligos oMZ701/oMZ706, further amplified with oligos oMZ703/oMZ707, and Gibson-cloned into pMZ331 cut with XbaI/EcoRI </td> </tr>
<tr> <td> pIG4000 </td> <td> oMZ700PhyB (1-605) - mCherry-sv40pA </td> <td> </td> <td> bla,ColE1 </td> <td> mCherry was first PCR amplified from pMZ300 with oligos oMZ701/oMZ706, further amplified with oligos oMZ703/oMZ707, and Gibson-cloned into pMZ331 cut with XbaI/EcoRI </td> </tr>
<tr> <td> pIG4001 </td> <td> PhyB (1-908) - mCherry- sV40pA </td> <td> </td> <td> bla,ColE1 </td> <td> mCherry was first PCR amplified from pMZ300 with oligos oMZ701/oMZ706, further amplified using the oligos oMZ704/oMZ707 and Gibson-cloned into pMZ358 cut with XbaI/EcoRI. </td> </tr>
<tr> <td> pIG4001 </td> <td> PhyB (1-908) - mCherry- sV40pA </td> <td> </td> <td> bla,ColE1 </td> <td> mCherry was first PCR amplified from pMZ300 with oligos oMZ701/oMZ706, further amplified using the oligos oMZ704/oMZ707 and Gibson-cloned into pMZ358 cut with XbaI/EcoRI. </td> </tr>
-
<tr> <td> pIG4002 </td> <td> hU6 - precrRNA-site - CAG - hCas9, D10A </td> <td> </td> <td> AmpR </td> <td>  Multiplex Genome Engineering Using CRISPR/Cas Systems. Cong et al (Science. 2013 Jan 3. PubMed) </td> </tr>
+
<tr> <td> pIG4002 </td> <td> hU6 - precrRNA-site - CAG - dCas9, D10A </td> <td> </td> <td> AmpR </td> <td> Multiplex Genome Engineering Using CRISPR/Cas Systems. Cong et al (Science. 2013 Jan 3. PubMed) </td> </tr>
<tr> <td> pIG4003 </td> <td> PIF3- mEGFP-sV40pA </td> <td> </td> <td> bla,ColE1 </td> <td> mEGFP was first PCR amplified from pMZ1050 with oligos oMZ728/oMZ729 and backbone pMZ354 was PCR amplified with oMZ726/oMZ727 for Gibson-Cloning. </td> </tr>
<tr> <td> pIG4003 </td> <td> PIF3- mEGFP-sV40pA </td> <td> </td> <td> bla,ColE1 </td> <td> mEGFP was first PCR amplified from pMZ1050 with oligos oMZ728/oMZ729 and backbone pMZ354 was PCR amplified with oMZ726/oMZ727 for Gibson-Cloning. </td> </tr>
-
<tr> <td> pIG4004 </td> <td> PhyB(1-605)- mCherry- Cas9-sV40pA </td> <td> pMZ700 </td> <td> bla,ColE1 </td> <td> mCherry was amplified from pMZ700 with oligos oHB058/ oHB059, Cas9 (hSpCsn1) was amplified from pMZ1025 with oHB060/ oHB061 and Gibson- Cloned into pMZ700 (after digestion of with XbaI/ EcorI </td> </tr>
+
<tr> <td> pIG4004 </td> <td> PhyB(1-605)- mCherry- dCas9-sV40pA </td> <td> pMZ700 </td> <td> bla,ColE1 </td> <td> mCherry was amplified from pMZ700 with oligos oHB058/ oHB059, dCas9 (hSpCsn1) was amplified from pMZ1025 with oHB060/ oHB061 and Gibson- Cloned into pMZ700 (after digestion of with XbaI/ EcorI </td> </tr>
-
<tr> <td> pIG4005 </td> <td> PhyB(1-908)- mCherry- Cas9-sV40pA </td> <td> pMZ701 </td> <td> bla,ColE1 </td> <td> mCherry was amplified from pIG4001 with oligos oIG4004/ oIG4001, Cas9 (hSpCsn1) was amplified from pHB1025 with oIG4002/ oIG4003 and Gibson- Cloned into pMZ701 (after digestion of with XbaI/ EcorI </td> </tr>
+
<tr> <td> pIG4005 </td> <td> PhyB(1-908)- mCherry- dCas9-sV40pA </td> <td> pMZ701 </td> <td> bla,ColE1 </td> <td> mCherry was amplified from pIG4001 with oligos oIG4004/ oIG4001, dCas9 (hSpCsn1) was amplified from pHB1025 with oIG4002/ oIG4003 and Gibson- Cloned into pMZ701 (after digestion of with XbaI/ EcorI </td> </tr>
-
<tr> <td> pIG4006 </td> <td> PhyB(1-908)- mCherry- Cas9 (with NLS)-sV40pA </td> <td> pMZ701 </td> <td> bla,ColE1 </td> <td> mCherry was amplified from pIG4001 with oligos oIG4004/ oIG4001, Cas9 (hSpCsn1) was amplified from pIG4002 with oIG4002/ oIG4005 (+NLS!) and Gibson- Cloned into pIG4001(after digestion of pIG4001 with XbaI/ EcorI) </td> </tr>
+
<tr> <td> pIG4006 </td> <td> PhyB(1-908)- mCherry- dCas9 (with NLS)-sV40pA </td> <td> pMZ701 </td> <td> bla,ColE1 </td> <td> mCherry was amplified from pIG4001 with oligos oIG4004/ oIG4001, dCas9 (hSpCsn1) was amplified from pIG4002 with oIG4002/ oIG4005 (+NLS!) and Gibson- Cloned into pIG4001(after digestion of pIG4001 with XbaI/ EcorI) </td> </tr>
-
<tr> <td> pIG4007 </td> <td> PhyB(1-650)- mCherry- Cas9 (with NLS)-sV40pA </td> <td> pMZ701 </td> <td> bla,ColE1 </td> <td> mCherry was amplified from pIG4000 with oligos oIG4000/ oIG4001, Cas9 (hSpCsn1) was amplified from pHB1025 with oIG4002/ oIG4005 and Gibson- Cloned into pIG4000 (after digestion of pIG4000 with XbaI/ EcorI </td> </tr>
+
<tr> <td> pIG4007 </td> <td> PhyB(1-650)- mCherry- dCas9 (with NLS)-sV40pA </td> <td> pMZ701 </td> <td> bla,ColE1 </td> <td> mCherry was amplified from pIG4000 with oligos oIG4000/ oIG4001, dCas9 (hSpCsn1) was amplified from pHB1025 with oIG4002/ oIG4005 and Gibson- Cloned into pIG4000 (after digestion of pIG4000 with XbaI/ EcorI </td> </tr>
Line 454: Line 478:
<tr> <td> pIG6000 </td> <td> pSb1C3_-Nhe1-pCMV-Sac2-eGFP-SalI-BanH1-NLS-terminator-Hind3-Kpn1-pSb1C3 </td> <td> </td> <td> </td> <td> CMV promotor was amplified from Plasmid golgi-Gfp 405(kindly provided by toolbox)  using oIG6000 and oIG6001. Avgfp was amplified from Plasmid golgi-Gfp 405  using oIG6002 and oIG6003. (iGEM cutting site was eliminated) BamH1 and Sal1were introduced to provide restrcitionsites for the insertion of caspase cleavage sites. a NLS was introduced. the terminator was amplified from Plasmid pmh 105 using oIG6022 and oIG6023. thereby Kpn1 und Nhe1 and the iGEM restrcitionsites Spe1 and Not1 were reestablished. Plasmid pSB1C3 serving as backbone was cut with Xba1 and Pst1. The 4 construts were fused together with a Gibson Assemby approach.  </td> </tr>
<tr> <td> pIG6000 </td> <td> pSb1C3_-Nhe1-pCMV-Sac2-eGFP-SalI-BanH1-NLS-terminator-Hind3-Kpn1-pSb1C3 </td> <td> </td> <td> </td> <td> CMV promotor was amplified from Plasmid golgi-Gfp 405(kindly provided by toolbox)  using oIG6000 and oIG6001. Avgfp was amplified from Plasmid golgi-Gfp 405  using oIG6002 and oIG6003. (iGEM cutting site was eliminated) BamH1 and Sal1were introduced to provide restrcitionsites for the insertion of caspase cleavage sites. a NLS was introduced. the terminator was amplified from Plasmid pmh 105 using oIG6022 and oIG6023. thereby Kpn1 und Nhe1 and the iGEM restrcitionsites Spe1 and Not1 were reestablished. Plasmid pSB1C3 serving as backbone was cut with Xba1 and Pst1. The 4 construts were fused together with a Gibson Assemby approach.  </td> </tr>
<tr> <td> pIG6001 </td> <td> pSb1C3_-Nhe1-pCMV-Sac2-CFP-SalI-BanH1-NLS-terminator-Hind3-Kpn1-pSb1C3 </td> <td> </td> <td> </td> <td> CMV promotor was amplified from Plasmid golgi-Gfp 405(kindly provided by toolbox)  using oIG6000 and oIG6001. ecfp was amplified from Plasmid pal 113  using oIG6002 and oIG6003. (iGEM cutting site was eliminated) BamH1 and Sal1were introduced to provide restrcitionsites for the insertion of caspase cleavage sites. a NLS was introduced. the terminator was amplified from Plasmid pmh 105 using oIG6022 and oIG6023. thereby Kpn1 und Nhe1 and the iGEM restrcitionsites Spe1 and Not1 were reestablished. Plasmid pSB1C3 serving as backbone was cut with Xba1 and Pst1. The 4 construts were fused together with a Gibson Assemby approach.  </td> </tr>
<tr> <td> pIG6001 </td> <td> pSb1C3_-Nhe1-pCMV-Sac2-CFP-SalI-BanH1-NLS-terminator-Hind3-Kpn1-pSb1C3 </td> <td> </td> <td> </td> <td> CMV promotor was amplified from Plasmid golgi-Gfp 405(kindly provided by toolbox)  using oIG6000 and oIG6001. ecfp was amplified from Plasmid pal 113  using oIG6002 and oIG6003. (iGEM cutting site was eliminated) BamH1 and Sal1were introduced to provide restrcitionsites for the insertion of caspase cleavage sites. a NLS was introduced. the terminator was amplified from Plasmid pmh 105 using oIG6022 and oIG6023. thereby Kpn1 und Nhe1 and the iGEM restrcitionsites Spe1 and Not1 were reestablished. Plasmid pSB1C3 serving as backbone was cut with Xba1 and Pst1. The 4 construts were fused together with a Gibson Assemby approach.  </td> </tr>
-
<tr> <td> pIG8002 </td> <td> HA-NLS-Cas9-GSAGSAG-G9a_NLS </td> <td> pX334a </td> <td> amp </td> <td> </td> </tr>
+
<tr> <td> pIG8002 </td> <td> HA-NLS-dCas9-GSAGSAG-G9a_NLS </td> <td> pX334a </td> <td> amp </td> <td> </td> </tr>
<tr> <td> pIG8002_1 </td> <td> pIG8002 cut with BbsI and ligated with VEGF crRNA1 </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG8002_1 </td> <td> pIG8002 cut with BbsI and ligated with VEGF crRNA1 </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG8002_2 </td> <td> pIG8002 cut with BbsI and ligated with VEGF crRNA2 </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG8002_2 </td> <td> pIG8002 cut with BbsI and ligated with VEGF crRNA2 </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG8002_3 </td> <td> pIG8002 cut with BbsI and ligated with VEGF crRNA3 </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG8002_3 </td> <td> pIG8002 cut with BbsI and ligated with VEGF crRNA3 </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG8002_4 </td> <td> pIG8002 cut with BbsI and ligated with VEGF crRNA4 </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG8002_4 </td> <td> pIG8002 cut with BbsI and ligated with VEGF crRNA4 </td> <td> </td> <td> </td> <td> </td> </tr>
-
<tr> <td> pIG8004 </td> <td> HA-NLS-Cas9-GSAGSAG-dG9a_NLS </td> <td> pX334a </td> <td> amp </td> <td> </td> </tr>
+
<tr> <td> pIG8004 </td> <td> HA-NLS-dCas9-GSAGSAG-dG9a_NLS </td> <td> pX334a </td> <td> amp </td> <td> </td> </tr>
<tr> <td> pIG8004_1 </td> <td> pIG8004 cut with BbsI and ligated with VEGF crRNA1 </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG8004_1 </td> <td> pIG8004 cut with BbsI and ligated with VEGF crRNA1 </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG8004_2 </td> <td> pIG8004 cut with BbsI and ligated with VEGF crRNA2 </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG8004_2 </td> <td> pIG8004 cut with BbsI and ligated with VEGF crRNA2 </td> <td> </td> <td> </td> <td> </td> </tr>
Line 465: Line 489:
<tr> <td> pIG8004_4 </td> <td> pIG8004 cut with BbsI and ligated with VEGF crRNA4 </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG8004_4 </td> <td> pIG8004 cut with BbsI and ligated with VEGF crRNA4 </td> <td> </td> <td> </td> <td> </td> </tr>
<tr> <td> pIG4100 </td> <td> tetO13 - CMV Promotor - SEAP - SV40 </td> <td> T405 </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4100 </td> <td> tetO13 - CMV Promotor - SEAP - SV40 </td> <td> T405 </td> <td> Amp </td> <td> </td> </tr>
-
<tr> <td> pIG4101 </td> <td> pSV40 - NLS - Cas9 - NLS - Linker - PIF - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
+
<tr> <td> pIG4101 </td> <td> pSV40 - NLS - dCas9 - NLS - Linker - PIF - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4102 </td> <td> pSV40 - PhyB - KRAB - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4102 </td> <td> pSV40 - PhyB - KRAB - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
-
<tr> <td> pIG4103 </td> <td> pSV40 - NLS - Cas9 - NLS - Linker - UVR8 - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
+
<tr> <td> pIG4103 </td> <td> pSV40 - NLS - dCas9 - NLS - Linker - UVR8 - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4104 </td> <td> pSV40 - COP1 - KRAB - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4104 </td> <td> pSV40 - COP1 - KRAB - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
-
<tr> <td> pIG4105 </td> <td> pSV40 - NLS - Cas9 - NLS - Linker - CRY2 - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
+
<tr> <td> pIG4105 </td> <td> pSV40 - NLS - dCas9 - NLS - Linker - CRY2 - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4106 </td> <td> pSV40 - CIB - VP16 - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4106 </td> <td> pSV40 - CIB - VP16 - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4107 </td> <td> pSV40 - CIB - KRAB - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4107 </td> <td> pSV40 - CIB - KRAB - SV40 </td> <td> </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4108 </td> <td> crRNA tetO13 1.CC </td> <td> </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4108 </td> <td> crRNA tetO13 1.CC </td> <td> </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4109 </td> <td> crRNA tetO13 2.CC </td> <td> </td> <td> Amp </td> <td> </td> </tr>
<tr> <td> pIG4109 </td> <td> crRNA tetO13 2.CC </td> <td> </td> <td> Amp </td> <td> </td> </tr>
 +
<tr> <td> pIG9000 </td> <td> hU6 - EMX-crRNA - HA - NLS - dCas9 - NLS </td> <td> px334a </td> <td> Amp </td> <td> </td> </tr>
 +
</table>
</div>
</div>
</div>
</div>

Latest revision as of 22:35, 4 October 2013


Oligos
oligo name Sequence 5'-3' description
oIG0000 TGAGCAAGAGGTAAGGG Sequencing Primer
oIG0001 AAACTGGTGGACAGCAC Sequencing Primer
oIG0001_new GGACAGCACCGACAAGG Sequencing Primer
oIG0002 AGCTGCCTGAGAAGTAC Sequencing Primer
oIG0003 TGGACCTGCTGTTCAAG Sequencing Primer
oIG0004 ACGAGCTCGTGAAAGTG Sequencing Primer
oIG0005 AGAATGACAAGCTGATCCG Sequencing Primer
oIG0006 TGGCCTATTCTGTGCTG Sequencing Primer
oIG0007 CAGGCCGAGAATATCATCC Sequencing Primer
oIG0008 CAAACAACAGATGGCTGGC Sequencing Primer
oIG0009 CTCCGATCAGGTTCTTC Sequencing Primer
oIG0010 GACAAGAAGTACAGCATCG Sequencing Primer
oIG0011 CCCGTAATGCAGAAGAAG Sequencing Primer
oIG0012 GAAGCGGAGCTACTAAC Sequencing Primer
oIG0013 GACAATGCGATGCAATTTC Sequencing Primer
oIG0014 CTTGGTCACCTTCAGCTTG Sequencing Primer
oIG0015 TTTCTTGGGTAGTTTGCAG Sequencing Primer
oIG0016 ACCAAAATCAACGGGAC Sequencing Primer
oIG0017 ACCAATGTGACCGAGTTCG Sequencing Primer
oIG0018 GCCAGCCATCTGTTGTTTG Sequencing Primer
oIG0019 AGAAGCGCGATCACATG Sequencing Primer
oIG0020 CTAATTACAGCCCGGAGGA Sequencing Primer
oIG0021 ACCAGAAAGTTAACTGG Sequencing Primer (Bb Michael fwd)
oIG0022 TGGAATTCGCGGCCGCTTCTAGATGGCCGGCGACAAGAAGTACAGCATCGG Start+RFC25 fv
oIG0023 CTGCAGCGGCCGCTACTAGTATTAACCGGTGTCGCCTCCCAGCTGAG Ende+RFC25 rev
oIG0024 TCCGGCCTTATCCAGTTCGC 2742 (C-->A) rv
oIG0025 GCGAACTGGATAAGGCCGGATTCATCAAGAGACAGCTGGTGG 2742(C-->A) fv
oIG0026 TTGCAGGTAGTACAGGTACAGCTTCTCGTTCTGAAGCTGGGTGTTTTCCACGG 2415(G-->T)/2448 (G-->A!) rev
oIG0027 TGTACCTGTACTACCTGCAAAATGGGCGGGATATGTACGTG 2415(G-->T)/2448(G-->A!) fv
oIG0028 TGGCTCCGCCGTCAATGTATCCGGCGTAGCCGTTCTTG 1080(C-->A) rev
oIG0029 ATACATTGACGGCGGAGCC 1080(C-->A) fv
oIG0031 GGGCGAACTGCAAAAGGGAAACGAACTGGCCC 3648(C-->T)/3660(G-->A!) fv
oIG0032 TTCCCTTTTGCAGTTCGCCCGCAGAGGCCAGCATTCTCTTC 3648(C-->G)/3660(G-->A!) rev
oIG0033 AGGCAGCCCCGCCATTAAGAAGGGCATCCTGCAAACAGTGAAGGTGGTGGACGAGCTCGTGAAAGTGATGGGACGGCACAAGCCCGAGAAC 2181 (C-->A)/2214(G-->A!)/2253(C-->A) fv
oIG0034 TCTTAATGGCGGGGCTGCCTGCCAGATTGGCAATGTGCTC 2181(C-->A)/2214(G-->A!)/2253(C-->A)rev
oIG0035 TGGCCGAGGATGCCAAACTTCAGCTGAGCAAGGACACCTAC 789 (G-->T) fv
oIG0036 AGGTGTCCTTGCTCAGCTGAAGTTTGGCATCCTCGGCC 789(G-->C) rev
oIG0037 ACCGGTTAATACTAGTAGCGGCCGC pSB1C3-RFC25_fw (AgeI, SpeI, NotI)
oIG0038 GCCGGCCATCTAGAAGCGGC pSB1C3-RFC25_rev (NgoMIV, XbaI)
oIG6017 GAGTGCCACCTGACGTCTAAGAAAC primerpBS1C3fw sequencing
oIG6018 CGCCTTTGAGTGAGCTGATACCGC primerpBS1C3rv sequencing
oIG0039 ATGATTTCTGGAATTCGCGGCCGCTTCTAGATGGCCGGCGCGCGTACGAAAAACAATTACGGGTC VP16 [25] for
oIG0040 TTTTGCCGGACTGCAGCGGCCGCTACTAGTATTAACCGGTCCCACCGTACTCGTCAATTCCAAGG VP16 [25] rev
oIG0041 ATGATTTCTGGAATTCGCGGCCGCTTCTAGATGGCCGGCATGGATGCTAAGTCACTAACTGCCTGG KRAB [25] for
oIG0042 TTTTGCCGGACTGCAGCGGCCGCTACTAGTATTAACCGGTCCAGAGATCATTCCTTGCCATTCCTTC KRAB [25] rev
oIG0043 TTCTGGAATTCGCGGCCGCTTCTAGATGGCCGGCCTGTGGAATGTGTGTCAGTTAGGGTG SV40 Promoter [25] fw
oIG0044 CGGACTGCAGCGGCCGCTACTAGTATTAACCGGTAGCTTTTTGCAAAAGCCTAGGCCTCC SV40 Promoter [25] rev
oIG0045 CCGGCGCAGGCTCCACCGGTTAATA Linker: Scar (Ala-Gly) - Ala-Gly-Ser - Scar (Thr-Gly) [25] fw
oIG0046 CTAGTATTAACCGGTGGAGCCTGCG Linker: Scar (Ala-Gly) - Ala-Gly-Ser - Scar (Thr-Gly) [25] fw
oIG0047 CCGGCTACCCATACGATGTTCCAGATTACGCTACCGGTTAATA HA-tag – fw primer
oIG0048 CTAGTATTAACCGGTAGCGTAATCTGGAACATCGTATGGGTAG HA-tag rev primer
oIG0049 TGATTTCTGGAATTCGCGGCCGCTTCTAGATGGCCGGCGTGCCTTCTAGTTGCCAGCC BGH-Terminator fv
oIG0050 CCCTTTTTTGCCGGACTGCAGCGGCCGCTACTAGTATTAACCGGTCATAGAGCCCACCGCATCC BGH-Terminator rev
oIG0051 CCGGCGATAGTGCTGGTAGTGCTGGTAGTGCTGGTACCGGTTAATA DSAGSAGSAG-Linker fv
oIG0052 CTAGTATTAACCGGTACCAGCACTACCAGCACTACCAGCACTATCG DSAGSAGSAG-Linker rev
oIG0053 ATATCTTGTGGAAAGGACG colony pcr pIG3010 crRNA locus for
oIG0054 TTCTGCAGAATTGGCGCAC colony pcr pIG3010 crRNA locus rev
oIG0055 AACCGGTGCAGAATTGG
oIG0056 TTTTGCCGGACTGCAGCGGCCGCTACTAGTATTAACCGGTGCAGAATTGGCGCACGCGCTAG
oIG0057 AGCTTTCGCTAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGAGGTGCCTTCTAGTTGCCAGCC BGH (RFC 10) fwd
oIG0058 CCCTTTTTTGCCGGACTGCAGCGGCCGCTACTAGTACATAGAGCCCACCGCATCC BGH (RFC 10) rev
oIG0059 AGCTTTCGCTAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGAGCTGTGGAATGTGTGTCAGTTAGGGTG SV40 (RFC 10) fwd
oIG0060 CCCTTTTTTGCCGGACTGCAGCGGCCGCTACTAGTAAGCTTTTTGCAAAAGCCTAGGCCTCC SV40 (RFC 10) rev
oIG1000 CTAGCGCGTGCGCCAATTC pCBh-fwd_pX334a
oIG1001 GAAAGCTCTGAGGCACGATGGCGTCCACATCGTAGTCGGACAG hSpCsn1-H840A-rev_pX334a
oIG1002 TGTCCGACTACGATGTGGACGCCATCGTGCCTCAGAGCTTTCTG hSpCsn-H840A-fwd_pX334a
oIG1003 GTACGCGCGCGACCAGCACTACCAGCACTGTCGCCTCCCAGCTGAGAC VP16-linker-hSpCsn-rev_pX334a
oIG1004 TGGGAGGCGACAGTGCTGGTAGTGCTGGTCGCGCGCGTACGAAAAACAATTAC hSpCsn-linker-VP16-fwd_pKM018
oIG1005 GGAGCGGGTTGATGACGTCAGCGTTCGAATTGCGGCCGCGGCAGGATCATAATCAGCCATAC pX334a-SV40pA-rev_pKM018
oIG1007 AAACGGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGT sticky end bsbI-EMXI Locus-sticky end bsbI-fwd_pX334a
oIG1008 TAAAACTTCTTCTTCTGCTCGGACTCAGGCCCTTCC sticky end bsbI-EMXI Locus-sticky end bsbI-rev_pX334a
oIG1009 CGATATCAGGAGGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGGGCTCTCGCGACCTGCAGGG AatII-EcorV-emxIoperator-NruI-SbfI-NheI-fwd_pKM602
oIG1010 CTAGCCCTGCAGGTCGCGAGAGCCCTTCTTCTTCTGCTCGGACTCAGGCCCTTCCTCCTGATATCGACGT AatII-EcorV-emxIoperator-NruI-SbfI-NheI-rev_pKM602
oIG1011 AAACTTAAAAGTCGGCTGGTAGCGGGGAGGATCGGT human VEGFA locus 1_VZ-8_fwd_pKM600
oIG1012 TAAAACCGATCCTCCCCGCTACCAGCCGACTTTTAA human VEGFA locus 1_VZ-8_rev_pKM600
oIG1013 AAACGTGTGCAGACGGCAGTCACTAGGGGGCGCTGT human VEGFA locus 2_VZ-573_fwd_pKM600
oIG1014 TAAAACAGCGCCCCCTAGTGACTGCCGTCTGCACAC human VEGFA locus 2_VZ-573_rev_pKM600
oIG1015 AAACGACCTGCTTTTGGGGGTGACCGCCGGAGCGGT human VEGFA locus 3_VZ+434b_fwd_pKM600
oIG1016 TAAAACCGCTCCGGCGGTCACCCCCAAAAGCAGGTC human VEGFA locus 3_VZ+434b_rev_pKM600
oIG1017 AAACGTGAGTGTGTGCGTGTGGGGTTGAGGGCGTGT human VEGFA locus 4_VZ-475__fwd_pKM600
oIG1018 TAAAACACGCCCTCAACCCCACACGCACACACTCAC human VEGFA locus 4_VZ-475_rev_pKM600
oIG1019 CGATATCAGGATTAAAAGTCGGCTGGTAGCGGGGAGGATCGCGGCTCTCGCGACCTGCAGGG AatII-EcorV-VEGFA_VZ-8-NruI-SbfI-NheI-fwd
oIG1020 CTAGCCCTGCAGGTCGCGAGAGCCGCGATCCTCCCCGCTACCAGCCGACTTTTAATCCTGATATCGACGT AatII-EcorV-emxIoperator-NruI-SbfI-NheI-rev
oIG1021 CGATATCAGGAGTGTGCAGACGGCAGTCACTAGGGGGCGCTCGGCTCTCGCGACCTGCAGGG AatII-EcorV-VEGFA_ VZ-573-NruI-SbfI-NheI-fwd
oIG1022 CTAGCCCTGCAGGTCGCGAGAGCCGAGCGCCCCCTAGTGACTGCCGTCTGCACACTCCTGATATCGACGT AatII-EcorV-VEGFA_ VZ-573-NruI-SbfI-NheI-rev
oIG1023 CGATATCAGGAGACCTGCTTTTGGGGGTGACCGCCGGAGCGCGGCTCTCGCGACCTGCAGGG AatII-EcorV-VEGFA_ VZ+434b-NruI-SbfI-NheI-fwd
oIG1024 CTAGCCCTGCAGGTCGCGAGAGCCGCGCTCCGGCGGTCACCCCCAAAAGCAGGTCTCCTGATATCGACGT AatII-EcorV-VEGFA_ VZ+434b-NruI-SbfI-NheI-rev
oIG1025 CGATATCAGGAGTGAGTGTGTGCGTGTGGGGTTGAGGGCGTAGGCTCTCGCGACCTGCAGGG AatII-EcorV-VEGFA_ VZ-475-NruI-SbfI-NheI-fwd
oIG1026 CTAGCCCTGCAGGTCGCGAGAGCCTACGCCCTCAACCCCACACGCACACACTCACTCCTGATATCGACGT AatII-EcorV-VEGFA_ VZ-475-NruI-SbfI-NheI-rev
oIG1027 GTTCTCCTCCTCAACTG Sequencing Primer pKM602
oIG1028 GTAACTTGAAAGTATTTCGATTTCTTG DR-fwd_pX334a
oIG1029 GCGGCCGCAATTCGAACG H1Promotor-fwd_BBpX334a
oIG1030 CACAAGATATATAAAGCCAAGAAATC U6 Promotor-rev_BBpX334a
oIG2000 CAGACCCCGTAGAAAAGATCAAAGGATC Ori1-hU6-CAGenhancer-hSpdCas9-fwd_pX334a
oIG2001 GAAAGCTCTGAGGCACGATAGCGTCCACATCGTAGTCGGAC hSpdCas9-H840A-rev_pX334a
oIG2002 GTCCGACTACGATGTGGACGCTATCGTGCCTCAGAGCTTTC H840A-linkerGSAGSAG-KRAB-fwd_pX334a
oIG2003 CTTAGCATCCATGCCGGCGGAGCCTGCTGATCCGGGGCTGTCGCCTCCCAGC H840A-linkerGSAGSAG-KRAB-rev_pX334a
oIG2004 GACAGCCCCGGATCAGCAGGCTCCGCCGGCATGGATGCTAAGTCACTAACTGCCTGGTC linkerGSAGSAG-KRAB-bgHTerminator-fwd_pKM102
oIG2005 AGAAGGCACAGTCGAGGCTGATCGAAGCTTGGATCCTCACACCTTCC linkerGSAGSAG-KRAB-bgHTerminator-rev_pKM102/pX334a
oIG2006 GGAAGGTGTGAGGATCCAAGCTTCGATCAGCCTCGACTGTGCCTTCTAG bgHTerminator-PuroR/Backbone1-fwd_pKM102/pX334a
oIG2007 CACACCCGCCGCGCTTAATGCG bgHTerminator-PuroR/Backbone1-rev_pX334a
oIG2008 GCCCTGTAGCGGCGCATTAAGCG Backbone1-AmpR-Ori1-fwd_pX334a
oIG2009 GGATCTCAAGAAGATCCTTTGATCTTTTCTAC Backbone1-AmpR-Ori1-rev_pX334a
oIG2010 AAACGGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGT sticky end BbsI-EMX1-sticky end BbsI-fwd_pX334
oIG2011 TAAAACTTCTTCTTCTGCTCGGACTCAGGCCCTTCC sticky end BbsI-EMX1-sticky end BbsI-rev_pX334
oIG2012 CTAGGGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGGG sticky end NheI-EMX1-sticky end NheI-fwd_pKM006
oIG2013 CTAGCCCTTCTTCTTCTGCTCGGACTCAGGCCCTTCC sticky end NheI-EMX1-sticky end NheI-rev_pKM006
oIG2014 AATTGGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGGG sticky end EcoRI-EMX1-sticky end EcoRI-fwd_pKM006
oIG2015 AATTCCCTTCTTCTTCTGCTCGGACTCAGGCCCTTCC sticky end EcoRI-EMX1-sticky end EcoRI-rev_pKM006
oIG2016 AAACGGATCTGCACCACCGGCAAGCTGCCCGTGCCCGT sticky end BbsI-pKM006 target_nt650-sticky end BbsI-fwd_pX334
oIG2017 TAAAACGGGCACGGGCAGCTTGCCGGTGGTGCAGATCC sticky end BbsI-pKM006 target_nt650-sticky end BbsI-rev_pX334
oIG2018 AAACGGCACGACTTCTTCAAGTCCGCCATGCCCGAGT sticky end BbsI-pKM006 target_nt750-sticky end BbsI-fwd_pX334
oIG2019 TAAAACTCGGGCATGGCGGACTTGAAGAAGTCGTGCC sticky end BbsI-pKM006 target_nt750-sticky end BbsI-rev_pX334
oIG2020 AAACGGCGACACCCTGGTGAACCGCATCGAGCTGAAGT sticky end BbsI-pKM006 target_nt850-sticky end BbsI-fwd_pX334
oIG2021 TAAAACTTCAGCTCGATGCGGTTCACCAGGGTGTCGCC sticky end BbsI-pKM006 target_nt850-sticky end BbsI-rev_pX334
oIG2022 AAACGGCGTCTATATCACCGCCGACAAGCAGAAGAAGT sticky end BbsI-pKM006 target_nt950-sticky end BbsI-fwd_pX334
oIG2023 TAAAACTTCTTCTGCTTGTCGGCGGTGATATAGACGCC sticky end BbsI-pKM006 target_nt950-sticky end BbsI-rev_pX334
oIG2024 AAACGGAGAGCTCGTTTAGTGAACCGTCAGATCGCCGT sticky end BbsI-pKM006 target_CMVmin1-sticky end BbsI-fwd_pX334
oIG2025 TAAAACGGCGATCTGACGGTTCACTAAACGAGCTCTCC sticky end BbsI-pKM006 target_CMVmin1-sticky end BbsI-rev_pX334
oIG2026 AAACGGCACGCTGTTTTGACCTCCATAGAAGACACCGT sticky end BbsI-pKM006 target_CMVmin2-sticky end BbsI-fwd_pX334
oIG2027 TAAAACGGTGTCTTCTATGGAGGTCAAAACAGCGTGCC sticky end BbsI-pKM006 target_CMVmin2-sticky end BbsI-rev_pX334
oIG2028 CCGGTGCCACCATGTACCCATAC hSpdCas9-H840A-fwd_pX334a
oIG2029 CGTAATCTGGAACATCGTATGGGTACATG Ori1-hU6-CAGenhancer-hSpdCas9-H840A-rev_pX334a
oIG2030 AAACCAAGGTCGGAGTACTGTCCTCCGACACTAGGT sticky end bsbI-UAS_Zebrafish_Locus_pos58-sticky end bsbI-fwd
oIG2031 TAAAACCTAGTGTCGGAGGACAGTACTCCGACCTTG sticky end bsbI-UAS_Zebrafish_Locus_pos58-sticky end bsbI-rev
oIG2032 AAACGAAATTCGGTCCATCCGCGCGCGCAGAGTGGT sticky end bsbI-Bmp2b_Zebrafish_Locus_pos55-sticky end bsbI-fwd
oIG2033 TAAAACCACTCTGCGCGCGCGGATGGACCGAATTTC sticky end bsbI-Bmp2b_Zebrafish_Locus_pos55-sticky end bsbI-rev
oIG2034 AAACAACTCCTCCATGCATATGTTAATGCGCCGCGT sticky end bsbI-Pouf51-VOX_Zebrafish_Locus_pos125-sticky end bsbI-fwd
oIG2035 TAAAACGCGGCGCATTAACATATGCATGGAGGAGTT sticky end bsbI-Pouf51-VOX_Zebrafish_Locus_pos125-sticky end bsbI-rev
oIG2036 TAATACGACTCACTATAGGGACGAAACACCGGGTTTTAGAGC crRNA with T7 site (forward)
oIG2037 CACGCGCTAGAAAAAGTTTTGGGACC crRNA (reverse)
oIG2038 TAATACGACTCACTATAGGGACCGGTGCCACCATGTACC dCas9 with T7 site and Kozak-sequence (forward)
oIG2039 AATTGCGGCCGCTCCCCAGC bGH Terminator (reverse)
oIG2040 GCAATAGCATCACAAATTTCACAAATAAAGC SV40 Terminator (reverse)
oIG2041 TAATACGACTCACTATAGGGGTTGGAACCATTCAAAACAGCATAGCAAGTTAAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGTCGGTGCTTTTTGGCG tracrRNA with T7 site (forward)
oIG2042 CGCCAAAAAGCACCGACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTATTTTAACTTGCTATGCTGTTTTGAATGGTTCCAACCCCTATAGTGAGTCGTATTA tracrRNA (reverse)
oIG2043 AAACGATGCGGTTTTGGCAGTACATCAATGGGCGGT sticky end BbsI-CMV target of pIG6000-sticky end BbsI-fwd
oIG2044 TAAAACCGCCCATTGATGTACTGCCAAAACCGCATC sticky end BbsI-CMV target of pIG6000-sticky end BbsI-rev
oIG3001 GGCAGCGCCGGCTCCGGCAGCGCCTCCGGCATGGTGAGCAAGGGCGAGGAGG Linker1-mCherry_forw_pMZ333
oIG3002 TCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATCACTTGTACAGCTCGTCCATGCCGC mCherry-Bb_rev_pMZ333
oIG3003 TGTCTTTTATTTCAGGTCCCGGATCGAATTGCGGCCGCAGGAGGCGCCACCATGTACCCATACGATGTTCCAGATTACGCTGACAAGAAGTACAGCATCGGCCTG Bb-HA-dCas9_forw_pX334a
oIG3004 GCCGGAGGCGCTGCCGGAGCCGGCGCTGCCGTCGCCTCCCAGCTGAGACAG dCas9-Linker1_rev_pX334a
oIG3005 TGTCTTTTATTTCAGGTCCCGGATCGAATTGCGGCCGCAGGAGGCGCCACCATGTACCCATACGATGTTCCAGATTACGC Bb-HA(-NLS-dCas9)_forw_pMZ333
oIG3006 TCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATCAGCTGGCCTCCACTTTTCTCTTCTTTTTGGGGCTCTTGTACAGCTCGTCCATGCCGC mCherry-NLS-Bb_rev_pMZ333
oIG3007 TGTCTTTTATTTCAGGTCCCGGATCGAATTGCGGCCGCAGGAGGCGCCACCATGTACCCATACGATGTTCCAGATTACGCTATGAGAGCTGCCAACCTTTGGCCAAG Bb-HA-ERT2_forw_pMItom
oIG3008 GGACGCTTCGACCTTGCGCTTTTTCTTCGGCGAGACTGTGGCAGGGAAACCCTCTG ERT2-NLS(-dCas9)_rev_pMItom
oIG3009 GGGGAGGCAGAGGGTTTCCCTGCCACAGTCTCGCCGAAGAAAAAGCGCAAGGTC ERT2-NLS(-dCas9)_forw_pX334a
oIG3010 GCTGGCCTCCACTTTTCTCTTCTTTTTGGGGCTCTTGTACAGCTCGTCCATGCCGC mCherry-NLS3'_rev_pMZ333
oIG3011 AGCCCCAAAAAGAAGAGAAAAGTGGAGGCCAGCATGAGAGCTGCCAACCTTTGGCCAAG NLS3'-ERT2_forw_pMItom
oIG3012 TCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATCAGACTGTGGCAGGGAAACCCTCTG ERT2-Bb_rev_pMItom
oIG3013 AAACGATGATGAGGTTCTTGGCGGCTGTCTGTGCGT crRNA_SEAP(nt136-166)_forw
oIG3014 TAAAACGCACAGACAGCCGCCAAGAACCTCATCATC crRNA_SEAP(nt136-166)_rev
oIG3015 AAACCTGGCACATGTTTGTCTACATTGTATGTCTGT crRNA_SEAP(nt293-323)_forw
oIG3016 TAAAACAGACATACAATGTAGACAAACATGTGCCAG crRNA_SEAP(nt293-323)_rev
oIG4000 GATATGGCGGGGGAACAGGGG mCherry-fwd_pMZ700
oIG4001 GCCGCTGCCGGCGCCGCTGCCGGCGCTGCCCTTGTACAGCTCGTCCATGCCGC mCherry-rev_pMZ700/pMZ701
oIG4002 GGCAGCGCCGGCAGCGGCGCCGGCAGCGGCGACAAGAAGTACAGCATCGGCCTG dCas9-fwd_pMZ1025
oIG4003 GTCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATTAGTCGCCTCCCAGCTGAGACAG dCas9-rev_pMZ1025
oIG4004 GTTATTGGGGCTTTCTGTTTCTTGCAAATCC mCherry-fwd_pMU701
oIG4005 GTCTGGATCGAAGCTTGGGCTGCAGGTCGACTCTAGATTACACCTTTCTCTTCTTCTTGGGGCTGTC dCas9(with NLS)-rev_pMZ1025
oIG4006 TCGAAGCTTGGGCTGCAGGTCGACTCTAGATTACACCTTTCTCTTCTTCTTGGGGCTGTCGCCTCCCAGCTGAGACAG dCas9(with NLS)-rev_pIG4004 and pIG4005
oIG5000 TGCCTGAAATCACTTTTTTTCAGGTTGGACCGGTGCCACCTCGCGAATGTACCCATACGATGTTCCAGATTACG Backbone-Nru1-HA_for_pX334a
oIG5001 GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGGATCCATGGCCGACAAGCAGAAGAACGGC (GGGGS)3_Linker-BamH1-splitC_YFP_for_BBa_K323080
oIG5002 AAGTTAGTAGCTCCGCTTCCGCTGGCCTCCACCTTTCTCTTCTTCTTGGGGCTGTCGACCTTGTACAGCTCGTCCATGCCGAG P2A(first 20bp)-NLS-Sal1-splitC_YFP_rev_BBa_K323080
oIG5003 GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGGATCCGTGAGCAAGGGCGAGGAGCTG (GGGGS)3_Linker-BamH1-splitN_YFP_for_BBa_K323005
oIG5004 AAGTTAGTAGCTCCGCTTCCGCTGGCCTCCACCTTTCTCTTCTTCTTGGGGCTGTCGACGATGTTGTGGCGGATCTTGAAGTTCAC P2A(first20 bp)-NLS-Sal1-splitN_YFP_rev_BBa_K323005
oIG5007 GGAAGCGGAGCTACTAACTTCAGCCTGCTGAAGCAGGCTGGAGACGTGGAGGAGAACCCTGGACCTATGGTGAGCAAGGGCGAGGAGG P2A-mCherry_for_pMH206
oIG5008 CAACTAGAAGGCACAGTCGAGGCTGATCAGCGAGCTCTAGTCGCGATTACTTGTACAGCTCGTCCATGCCGC Backbone(pX334a)-Nru1-mCherry_rev_pMH206
oIG5009 CTAGAGCTCGCTGATCAGCCTCG forward - pX334a backbone amplification (Part1)
oIG5010 TCAAAAGAATAGCCCGAGATAGGGTTGAG reverse - pX334a backbone amplification (Part1)
oIG5011 CTTTAATAGTGGACTCTTGTTCCAAACTGGAAC forward - pX334a backbone amplification (Part2)
oIG5012 GGTGGCACCGGTCCAACCTG reverse - pX334a backbone amplification (Part2)
oIG5013 ACTGCCTCCGCCACCACTGCCACCGCCTCCGTCGCCTCCCAGCTGAGACAG (GGGGS)3_Linker-dCas9_rev_pX334a
oIG5014 GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGGATCCATGGAGAACACTGAAAACTCAGTGGATTC (GGGGS)3_Linker-BamH1-Caspase3_for_pMK31
oIG5015 AAGTTAGTAGCTCCGCTTCCGCTGGCCTCCACCTTTCTCTTCTTCTTGGGGCTGTCGACATGATGATGATGATGATGGTGATAAAAATAGAGTTC P2A(first 20bp)-NLS-Sal1-Caspase3_rev_pMK31
oIG5016 CTTAGCGGCAGCTTCCTTAGCGGCAGCTTCGTCGCCTCCCAGCTGAGACAG (EAAAK)3_Linker-dCas9_rev_pX334a
oIG5017 GAAGCTGCCGCTAAGGAAGCTGCCGCTAAGGGATCCATGGAGAACACTGAAAACTCAGTGGATTCAAAATC (EAAAK)3_Linker-BamH1-Caspase3_for_pMK31
oIG5018 GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGGATCCAGGCAAGCAGCAAAGTTGTCGAAGCC (GGGGS)3_Linker-BamH1-Casp9_for_pKJ42
oIG5019 AAGTTAGTAGCTCCGCTTCCGCTGGCCTCCACCTTTCTCTTCTTCTTGGGGCTGTCGACTGATGTTTTAAAGAAAAGTTTTTTCCGGAGG P2A(first 20bp)-NLS-sal1-Casp9(long)_rev_pKJ42
oIG5021 GAAGCTGCCGCTAAGGAAGCTGCCGCTAAGGGATCCAGGCAAGCAGCAAAGTTGTCGAAGCC (EAAAK)2-BamH1-Casp9_for_pKJ42
oIG5022 GTCTATATAAGCAGAGCTCTCTGGCATGAGCCCCAAGAAGAAGAGAAAGGTGGAGGCCAGCATGTCGAATTCTTATGACTCCTCCAGTATC Backbone(pcDNA_3.1)-NLS-GyrB-Caspase3_for_pMK31
oIG5023 GTCTATATAAGCAGAGCTCTCTGGCATGAGCCCCAAGAAGAAGAGAAAGGTGGAGGCCAGCAGGCAAGCAGCAAAGTTGTCGAAGC Backbone(pcDNA_3.1)-NLS-Caspase9-GyrB_for_pKJ42
oIG5024 AAGTTAGTAGCTCCGCTTCCGCTGGCCTCCACCTTTCTCTTCTTCTTGGGGCTGCCTTCATAGTGGAAGTGGTCTTCTTTG P2A(first 20bp)-NLS-Caspase9-GyrB_rev_pKJ42
oIG5025 ACTGCCTCCGCCACCACTGCCACCGCCTCCGCCTTCATAGTGGAAGTGGTCTTCTTTG (GGGGS)2_Linker-GyrB_rev_pMK31
oIG5026 ATGGCTGGCAACTAGAAGGCACAGTCGAGGTCACTTGTACAGCTCGTCCATGCCGC Backbone(pcDNA_3.1)-mCherry_rev_pMH206
oIG5027 CCTCGACTGTGCCTTCTAGTTGCC forward - pcDNA_3.1 backbone amplification (Part1)
oIG5028 CACTTTATGCTTCCGGCTCGTATGTTG reverse - pcDNA_3.1 backbone amplification (Part1)
oIG5029 CCACACAACATACGAGCCGGAAGC forward - pcDNA_3.1 backbone amplification (Part2)
oIG5030 GCCAGAGAGCTCTGCTTATATAGACC reverse - pcDNA_3.1 backbone amplification (Part2)
oIG5031 CAGGTTGGACCGGTGCCACCTCGCGAATGAGCCCCAAGAAGAAGAGAAAGGTGGAGGCCAGCGGATCCAGGCAAGCAGCAAAGTTGTCGAAGC Backbone(pX334a)-Nru1-NLS-BamH1-Caspase9(long)_for_pKJ42
oIG5032 ACTGCCTCCGCCACCACTGCCACCGCCTCCGTCGACTGATGTTTTAAAGAAAAGTTTTTTCCGGAGG (GGGGS)2_Linker_Sal1_Caspase9(long)_rev_pKJ42
oIG5033
oIG5034 GGAGGCGGTGGCAGTGGTGGCGGAGGCAGTGACAAGAAGTACAGCATCGGCCTGG (GGGGS)2_Linker-dCas9-NLS_for_pX334a
oIG5035 CTTCAGCAGGCTGAAGTTAGTAGCTCCGCTTCCAGCGTAATCTGGAACATCGTATGGGTACATGCTGGCCTCCACCTTTCTCTTCTTC P2A(first 33bp)-HA-dCas9-NLS_rev_pX334a
oIG6000 TCGCTAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGAGCAGCTAGCTAGTTATTAATAGTAATCAATTACGGGGTCATTAGTTC pCMVfor-psB1C3
oIG6001 CGAGCGGTCCGCGGAACCAGCGCTACCGGACTGCCATTGCTCCGGCTGATCTGACGGTTCACTAAACCAGCTC pCMVrev-eGFP
oIG6002 AGCCGGAGCAATGGCAGTCCGGTAGCGCTGGTTCCGCGGACCGCTCGGCCACCATGGTGAGCAAGGGC eGFPfor-CMV
oIG6003 GGACGCTTCGACCTTGCGCTTTTTCTTCGGCGAGGGATCCGACCCGTCGACGCCCTTGTACAGCTCGTCCATGC eGFPrev-Sal1-Bamh1-NLS
oIG6004 TCGCCGAAGAAAAAGCGCAAGGTCGAAGCGTCCTAAAGATCTATAATCAGCCATACCACATTTGTAGAGGTTTTAC terminatorfor-NLS
oIG6005 GCCGGACTGCAGCGGCCGCTACTAGTAAGGTACCGTAAGCTTTAGCTCTGAATGCATGCGTATTGCTAATGGGTCTAATGCAGTTAAGATACATTGATGAGTTTGGACAAACCAC terminatorrev-Nru1-Hind3-pSB1C3-Spe1-Not1-Pst1
oIG6006 AAACCCCTCGCCCTCGCCGGACACGCTGAACTTGGT eGFPfw
oIG6007 TAAAACCAAGTTCAGCGTGTCCGGCGAGGGCGAGGG eGFPrv
oIG6008 AAACGGCGGGCCATTTACCGTAAGTTATGTAACGGT CMVfw
oIG6009 TAAAACCGTTACATAACTTACGGTAAATGGCCCGCC CMVrv
oIG6010 AAACTTATGTTTCAGGTTCAGGGGGAGGTGTGGGGT sv40 terminatorfw
oIG6011 TAAAACCCCACACCTCCCCCTGAACCTGAAACATAA sv 40 terminatorrv
oIG6012 GGACGCTTCGACCTTGCGCTTTTTCTTCGGCGAGGGATCCGACCCGTCGACGCCTTACTTGTACAGCTCGTCCATGCCG eCFPrv
oIG605neu GTTCCCTTTTTTGCCGGACTGCAGCGGCCGCTACTAGTAAGGTACCGTAAGCTTTAGCTCTGAATGCATGCGTATTGCTAATGGGTCTAATGCAGTTAAGATACATTGATGAGTTTGGACAAACCAC rv primer für den terminator mit mehr basen overlapp
oIG6015 ATGTACACTAAGTCTAGCTAGACTAGCTGGTACCGACTAGTAGCGGCCGCTGCAGTC
oIG6016 GCTATAGCTAAGCGCGTCGAGTCGAGCGAAGCTTATCTAGAAGCGGCCGCGAATTCCAG
oIG6017 GAGTGCCACCTGACGTCTAAGAAAC primer für pSB1C3 fw
oIG6018 CGCCTTTGAGTGAGCTGATACCGC primer für pSB1C3 rv
oig6020 TCGCTAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGAGCAGCTAGCCGATGTACGGGCCAGATATACGCG CMV fw
oig6021 CGAGCGGTCCGCGGAACCAGCGCTACCGGACTGCCATTGCTCCGGCTAATTTCGATAAGCCAGTAAGCAGTGGGTTC CMV rv
oig6022 TCGCCGAAGAAAAAGCGCAAGGTCGAAGCGTCCTAAAGATCTCGACTGTGCCTTCTAGTTGCCAGC bgh terminator fw
oig6023 GCCGGACTGCAGCGGCCGCTACTAGTAAGGTACCGTAAGCTTTAGCTCTGAATGCATGCGTATTGCTAATGGGTCTAATGCACCATAGAGCCCACCGCATCCC bgh terminator rv
oig6024 AGCCGGAGCAATGGCAGTCCGGTAGCGCTGGTTCCGCGGACCGCTCGGCCACCATGGCCACAACCATGGTGAGCAAGG eCFP fw
oig6025 GGACGCTTCGACCTTGCGCTTTTTCTTCGGCGAGGGATCCGACCCGTCGACGCCCTTGTACAGCTCGTCCATGCCGAG eCFP rv
oig6030 AAACGTTCAAGTCGCACTCGCCGCTCCCGCTCCCGT AvGFP fw beginning
oig6031 TAAAACGGGAGCGGGAGCGGCGAGTGCGACTTGAAC AvGFP rv beginning
oig6032 AAACGTAACTGCGTTTACCCGCCATCCGCACATGGT target CMV promoter before tata fw
oig6033 TAAAACCATGTGCGGATGGCGGGTAAACGCAGTTAC target CMV promoter before tata rv
oig6034 AAACAGTCTAGTCGGCCTCGTTACCGTCAGGCCAGT target CMV behind tata fw
oig6035 TAAAACTGGCCTGACGGTAACGAGGCCGACTAGACT target CMV behind tata rv
oig6036 AAACAGATCAACGGTCGGTAGACAACAAACGGGGGT target bgh terminator beginning fw
oig6037 TAAAACCCCCGTTTGTTGTCTACCGACCGTTGATCT target bgh terminator beginning rv
oig6038 AAACGTTCAAGTCGCACAGGCCGCTCCCGCTCCCGT target eCFP fw
oig6039 TAAAACGGGAGCGGGAGCGGCCTGTGCGACTTGAAC target eCFP rv
oIG8002 GCCGGCGGAGCCTGCTGATCCGGGGCTGTCGCCTCCCAGC dCas9_GSAGSAG_rev
oIG8005 GGACGCTTCGACCTTGCGCTTTTTC NLS1_pX334_rev
oIG8006 GGATCAGCAGGCTCCGCCGGCGACAAGAAGTACAGCATCGGCCTG dCas9_GSAGSAG_fw
oIG8007 GGTGCTGGTATGACAAG G9a_seq_fw_pGEX2T
oIG8008 GATGTTGCCATAGTAACGG G9a_seq_rev_pGEX2T
oIG8009 GACAGCCCCGGATCAGCAGGCTCCGCCGGCGAGAATGTACCCATCCCCTGTGTC G9a(mm)_C-term_GSAGSAG_fw
oIG8010 GGATCCTCACACCTTCCGCTTTTTCTTGGGGGTGTTGATGGGGGGCAGGGA G9a(mm)_C-term_NLS_bgh_rev
oIG8011 AAGCGCAAGGTCGAAGCGTCCGAGAATGTACCCATCCCCTGTGTC G9a(mm)_N-term_NLS_fw
oIG8012 GCCGGCGGAGCCTGCTGATCCGGTGTTGATGGGGGGCAGGGA G9a(mm)_N-term_GSAGSAG_rev
oIG8013 GCCCGTTACTATGGCAACATCAGCCGATTCATTAACAAGCTGTGTGACCCCAACATCATCCCTGTCCGGGTTTTCATGCTG dG9a(mm)_H->K_fw
oIG8014 CAGCATGAAAACCCGGACAGGGATGATGTTGGGGTCACACAGCTTGTTAATGAATCGGCTGATGTTGCCATAGTAACGGGC dG9a(mm)_H->K_rev
oIG8015 GAATTCGCGGCCGCTTCTAGATGGCCGGCGAGAATGTACCCATCCCCTGTGTC _G9a_fw_std
oIG8016 CTGCAGCGGCCGCTACTAGTATTAACCGGTGGTGTTGATGGGGGGCAGGGA G9a_rev_std
oIG8017 GCAGTCATCCACACACGTGCAGTGCTGGAGATGGGTGATGTTGCGGTCGA G9a_1stsite_std_rev
oIG8018 CAGCACTGCACGTGTGTGGATG G9a_1stsite_std_fw
oIG8019 GCCCATCTTGGCAGTCCGGTAGAGCTGGAGCCGTACCTTGATGCCGCTCT G9a_2ndsite_std_rev
oIG8020 CAGCTCTACCGGACTGCCAAGA G9a_2ndsite_std_fw
oIG8021 CCCAAGAAAAAGCGGAAGGTGTGATC phyB hole vector for
oIG8022 GCGGCTGTACGCGGAACCAG phyB hole vector rev
oIG8023 GCTGGTAGTGCTGGTTCCGCGTACAGCCGCGAGAATGTACCCATCCCCTGTGTC phyB(overhang)_g9a for
oIG8024 CTCTAGATCACACCTTCCGCTTTTTCTTGGGGGTGTTGATGGGGGGCAGGGA phyB(overhang)_g9a rev
oIG9100 TCATATCCGCGGCATGTACCCATACGATGTTCCAGATTACG dCas9 fw incl. HA tag and NLS
oIG9191 GATATTGGTACCCATGCCTGCTATTCTCTTCCCAATCCTC dCas9 rv incl. Bgh terminator
oIG4100F GCTAGCTAGTTATTAATAGTAATCAATTACGGG wird nachgetragen
oIG4100R GAATTCGATCTGACGGTTCACTAAAC
oIG4101F ATGTACCCATACGATGTTCCAG
oIG4101R GGGGCTGTCGCCTCCCAG
oIG4102F GACACGGATCGACCTGTCTCAGCTGGGAGGCGACAGCCCCCCGAAGAAAAAGCGCAAGGTCGCGCTCGATAGTGCTGGTAG
oIG4102R TCTTCGGCGAAGCGTAATCTGGAACATCGTATGGGTACATGGTGGGCGGCCGCAATTC
oIG4103F ATGGATGCTAAGTCACTAACTGCC
oIG4103R TCACACCTTCCGCTTTTTCT
oIG4104F AAGGAATGATCTCTGGCCCAAGAAAAAGCGGAAGGTGTGATCTAGAGTCGACCTGCAGCC
oIG4104R CCAGTGTCCGGGACCAGGCAGTTAGTGACTTAGCATCCATGCGGCTGTACGCGGAACCAG
oIG4105F GACACGGATCGACCTGTCTCAGCTGGGAGGCGACAGCCCCCCGAAGAAAAAGCGCAAGGTCGGTACCGGCGCCGGCG
oIG4105R TCTTCGGCGAAGCGTAATCTGGAACATCGTATGGGTACATGGTGGGAATTCGCGGCC
oIG4106F AAGGAATGATCTCTGGCCCAAGAAAAAGCGGAAGGTGTGAGGGGCGCGAGGATCCTCTAG
oIG4106R CCAGTGTCCGGGACCAGGCAGTTAGTGACTTAGCATCCATCGCGCCGGCGCCCGCAG
oIG4107F GTCTCAGCTGGGAGGCGACAGCCCCCCGAAGAAAAAGCGCAAGGTCGGTAGTGCTGGTAGTGCTGGTAGTGCTGGTATGAAGATGGACAAAAAGACTATAGTT
oIG4107R TGCTGCTCCGATCATGATCTG
oIG4108F TTCAAGAACCCGTGAAGCACAGATCATGATCGGAGCAGCATGATCTAGAGTCGACCTGCAGC
oIG4108R TCTTCGGCGAAGCGTAATCTGGAACATCGTATGGGTACATGGTGGGCGGCCGCAATTC
oIG4109F GATAGTGCTGGTAGTGCTGGT
oIG4109R GGTGGGCGGCCGCAATTC
oIG4110F CTTTTATTTCAGGTCCCGGATCGAATTGCGGCCGCCCACCATGAATGGAGCTATAGGAGGTGAC
oIG4110R TGTACGCGGAACCAGCACTACCAGCACTACCAGCACTATCATGAATATAATCCGTTTTCTCCAATTCCT
oIG4111F AAGGAATGATCTCTGGCCCAAGAAAAAGCGGAAGGTGTGATCTAGAGTCGACCTGCAGCC
oIG4111R GGTGGGCGGCCGCAATTC
oIG4112R AGGCAGTTAGTGACTTAGCATCCATGCGGCTGTACGCGGAACCAGCACTACCAGCACTACCAGCACTATCATGAATATAATCCGTTTTCTCCAATTCCT
crRNA tetO 1 F TAAAACATCAGTGATAGAGAAAAGTGAAAGTCGAGT
crRNA tetO 1 R AAACACTCGACTTTCACTTTTCTCTATCACTGATGT
crRNA tetO 2 F TAAAACCTCCCTATCAGTGATAGAGAAAAGTGAAAG
oIG9000 AGGAGGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGGGCTC ELISA CRISPR/Cas9 for EMX1 sequence, biotinylated
oIG9001 GAGCCCTTCTTCTTCTGCTCGGACTCAGGCCCTTCCTCCT ELISA CRISPR/Cas9 for EMX1 sequence
oIG9002 CAGAAGCTGGAGGAGGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGGGCTC ELISA CRISPR/Cas9 for EMX1 sequence, biotinylated
oIG9003 GAGCCCTTCTTCTTCTGCTCGGACTCAGGCCCTTCCTCCTCCAGCTTCTG ELISA CRISPR/Cas9 for EMX1 sequence
oIG9004 CAGAAGCTGGAGGAGGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGGGCTCCCATCACATC ELISA CRISPR/Cas9 for EMX1 sequence, biotinylated
oIG9005 GATGTGATGGGAGCCCTTCTTCTTCTGCTCGGACTCAGGCCCTTCCTCCTCCAGCTTCTG ELISA CRISPR/Cas9 for EMX1 sequence
oIG9006 GGAAGGGCCTGAGTCCGAGCAGAAGAAGAAGTTTTAGAGCTATGCTGTTTTGAATGGTC forward primer for the insertion of the EMX1
oIG9007 TTCTTCTTCTGCTCGGACTCAGGCCCTTCCGTTTTGGGACCATTCAAAACAGCATAGC reverse primer for the insertion of the EMX1
oIG9008 GGGCTTGTACTCGGTCATGGTAAGCTTCAGCTGCTCGAGATCTAGATGGATGCAGGTCG reverse primer for the insertion of the EMX1
oIG9009 CGACCTGCATCCATCTAGATCTCGAGCAGCTGAAGCTTACC forward primer for the insertion of the EMX1
oIG9010 CAG CAT CGG CCT GGA CAT CGG C Site directed mutagenesis pcr reverse primer to reestablish the endonuclease activity by activating one inactivated nicase
oIG9011 GCC GAT GTC CAG GCC GAT GCT G Site directed mutagenesis pcr reverse primer to reestablish the endonuclease activity by activating one inactivated nicase
oIG9012 CAGAAGCTGGATTAAAAGTCGGCTGGTAGCGGGGAGGATCGGGGCTCCCATCACATC human VEGFA locus 1_VZ-8_fwd_pKM600, biotinylated
oIG9013 GATGTGATGGGAGCCCCGATCCTCCCCGCTACCAGCCGACTTTTAATCCAGCTTCTG human VEGFA locus 1_VZ-8_fwd_pKM600
oIG9015 CAGAAGCTGGAGACCTGCTTTTGGGGGTGACCGCCGGAGCGGGGCTCCCATCACATC human VEGFA locus 3_VZ+434b_fwd_pKM600, biotinylated
oIG9016 GATGTGATGGGAGCCCCGCTCCGGCGGTCACCCCCAAAAGCAGGTCTCCAGCTTCTG human VEGFA locus 3_VZ+434b_fwd_pKM600
oIG9018 CAGAAGCTGGACACGACTTCTTCAAGTCCGCCATGCCCGAGGGCTCCCATCACATC +750 Target, Forward, biotinylated
oIG9019 GATGTGATGGGAGCCCTCGGGCATGGCGGACTTGAAGAAGTCGTGTCCAGCTTCTG +750 Target, Forward
oIG9024 CAGAAGCTGGAAGAGCTCGTTTAGTGAACCGTCAGATCGCCGGGCTCCCATCACATC CMVmin 1 Target, biotinylated
oIG9025 GATGTGATGGGAGCCCGGCGATCTGACGGTTCACTAAACGAGCTCTTCCAGCTTCTG CMVmin 1 Target
oIG9041 CAGAAGCTGGAGTGTGCAGACGGCAGTCACTAGGGGGCGCTGGGCTCCCATCACATC human VEGFA locus2, biotinylated
oIG9042 GATGTGATGGGAGCCCAGCGCCCCCTAGTGACTGCCGTCTGCACACTCCAGCTTCTG human VEGFA locus 2
oIG9043 CAGAAGCTGGACGTCTATATCACCGCCGACAAGCAGAAGAAGGGCTCCCATCACATC target_nt950 pIG9003 fwd, biotinylated
oIG9044 GATGTGATGGGAGCCCTTCTTCTGCTTGTCGGCGGTGATATAGACGTCCAGCTTCTG target_nt950 pIG9003rev

Plasmids
plasmid name Description Backbone Resistance Reference
pIG0001 dCas9, RFC 25 pSB1C3 Chloramph. pX33a und pIG2004
pIG0002 pSV40, RFC 25 pSB1C3 Chloramph.
pIG0003 SV40, RFC 25 pSB1C3 Chloramph.
pIG0004 NLS, RFC 25 pSB1C3 Chloramph.
pIG0005 Linker, RFC 25 pSB1C3 Chloramph.
pIG0006 pSB1C3_VP16_pSB1C3 pSB1C3 cap VP16 was PCR amplified from pMK018 (kindly provided by ...) using oIG0039 and oIG0040 and cloned into Xba1 and Spe1 pre cutted pSB1C3 vector using Gibson assambly.
pIG0007 pSB1C3_KRAB_pSB1C3 pSB1C3 cap VP16 was PCR amplified from pKM102 (kindly provided by ...) using oIG0041 and oIG0042 and cloned into Xba1 and Spe1 pre cutted pSB1C3 vector using Gibson assambly.
pIG0008 G9a, RFC 25 pSB1C3 Chloramph.
pIG0009 ERT2, RFC 25 pSB1C3 Chloramph.
pIG0010 PIF, RFC 25 pSB1C3 Chloramph.
pIG0011 PhyB, RFC 25 pSB1C3 Chloramph.
pIG0012 UVR8, RFC 25 pSB1C3 Chloramph.
pIG0013 COP1, RFC 25 pSB1C3 Chloramph.
pIG0014 CIB, RFC 25 pSB1C3 Chloramph.
pIG0015 CRY2, RFC 25 pSB1C3 Chloramph.
pIG0016 RNA Plasmid pSB1C3 Chloramph.
pIG0017 HA-Tag pSB1C3 Chloramph. HA-Tag were designt as Oligos with overhangs to prefix and suffix of RFC25 (NgoMIV and SpeI sticky ends)
pIG0021 pSB1C3_tracrRNA_crRNA_psB1C3 pSB1C3 Chloramph.
pIG0018 NLS pSB1C3 Chloramph. NLS was used from FreiGEM10 (BBa_K404153, RFC25)
pIG0019 CMV pSB1C3 Chloramph. CMV was used from parts regestry (BBa_K747096, RFC10)
pIG0020 BGH pSB1C3 Chloramph. BGH was amplified from pGR2 with oIG0049 + oIG0050 and ligated into pSB1C3 via Gibson assembly.
pIG0021 a NLS-dCas9 pSB1C3 Chloramph. Ligation of pIG0018 and pIG0001 (RFC25)
pIG0022 CMV-HA pSB1C3 Chloramph. Ligation of pIG0017 and pIG0019 (RFC25)
pIG0023 SV40-HA pSB1C3 Chloramph. Ligation of pIG0003 and pIG0017 (RFC25)
pIG0024 NLS-BGH pSB1C3 Chloramph. Ligation of pIG0018 and pIG0020 (RFC25)
pIG0025 CMV-HA-NLS-dCas9 pSB1C3 Chloramph. Ligation of pIG0022 and pIG0021 (RFC25)
pIG0026 SV40-HA-NLS-dCas9 pSB1C3 Chloramph. Ligation of pIG0023 and pIG0021 (RFC25)
pIG0027 CMV-HA-NLS-dCas9-Linker (3AS) pSB1C3 Chloramph. Ligation of pIG0025 and pIG0029 (RFC25)
pIG0028 CMV-HA-NLS-dCas9-Linker (7AS) pSB1C3 Chloramph. Ligation of pIG0025 and pIG0030 (RFC25)
pIG0029 SV40-HA-NLS-dCas9-Linker(3AS) pSB1C3 Chloramph. Ligation of pIG0026 and pIG0029 (RFC25)
pIG0030 SV40-HA-NLS-dCas9-Linker(7AS) pSB1C3 Chloramph. Ligation of pIG0026 and pIG0030 (RFC25)
pIG0031 Linker 3 AS pSB1C3 Chloramph. Ligation of annealed oIG0045+46 and pSB1C3 RFC25
pIG0032 Linker (7 AS) pSB1C3 Chloramph. Ligation of annealed oIG0051+52 and pSB1C3 RFC25
pIG0033 HA-NLS-dCas9-Linker (3AS) pSB1C3 Chloramph.
pIG0034 SV40 im 10er Standard pSB1C3 Chloramph.
pIG0035 BGH im 10er Standard pSB1C3 Chloramph.
pIG0036 HA-NLS-dCas9-Linker (3AS)-KRAB pSB1C3 Chloramph.
pIG0037 HA-NLS-dCas9-Linker (3AS)-G9a pSB1C3 Chloramph.
pIG0038 HA-NLS-dCas9-Linker (3AS)-VP16 pSB1C3 Chloramph.
pIG0039 HA-NLS-dCas9-Linker (3AS)-KRAB-NLS-BGH pSB1C3 Chloramph.
pIG0040 HA-NLS-dCas9-Linker (3AS)-G9a-NLS-BGH pSB1C3 Chloramph.
pIG0041 HA-NLS-dCas9-Linker (3AS)-VP16-NLS-BGH pSB1C3 Chloramph.
pIG0042 SV40-HA-NLS-dCas9-Linker (3AS)-KRAB-NLS-BGH pSB1C3 Chloramph.
pIG0043 SV40-HA-NLS-dCas9-Linker (3AS)-G9a-NLS-BGH pSB1C3 Chloramph.
pIG0044 SV40-HA-NLS-dCas9-Linker (3AS)-VP16-NLS-BGH pSB1C3 Chloramph.
pIG0045 CMV-HA-NLS-dCas9-Linker (3AS)-KRAB-NLS-BGH pSB1C3 Chloramph.
pIG0046 CMV-HA-NLS-dCas9-Linker (3AS)-G9a-NLS-BGH pSB1C3 Chloramph.
pIG0047 CMV-HA-NLS-dCas9-Linker (3AS)-VP16-NLS-BGH pSB1C3 Chloramph.
pIG0048 pSV40-PhyB pSB1C3 Chloramph.
pIG0049 pSV40-COP1 pSB1C3 Chloramph.
pIG0050 L3-VP16 pSB1C3 Chloramph.
pIG0051 L3-KRAB pSB1C3 Chloramph.
pIG0052 CMV-PhyB pSB1C3 Chloramph.
pIG0053 CMV-COP1 pSB1C3 Chloramph.
pIG0054 CMV-PhyB-L3-VP16 pSB1C3 Chloramph.
pIG0055 CMV-PhyB-L3-KRAB pSB1C3 Chloramph.
pIG0056 CMV-COP1-L3-VP16 pSB1C3 Chloramph.
pIG0057 CMV-COP1-L3-KRAB pSB1C3 Chloramph.
pIG0058 CMV-PhyB-L3-VP16-NLS-BGH pSB1C3 Chloramph.
pIG0059 CMV-PhyB-L3-KRAB-NLS-BGH pSB1C3 Chloramph.
pIG0060 CMV-COP1-L3-VP16-NLS-BGH pSB1C3 Chloramph.
pIG0061 CMV-COP1-L3-KRAB-NLS-BGH pSB1C3 Chloramph.
pIG0062 CMV-HA-NLS-dCas9-BGH pSB1C3 Chloramph.
pIG0063 SV40-HA-NLS-dCas9-BGH pSB1C3 Chloramph.
pIG0064 SV40-HA-NLS-dCas9-Linker 3AS-Uvr8 pSB1C3 Chloramph.
pIG0065 SV40-HA-NLS-dCas9-Linker 3AS-Piff pSB1C3 Chloramph.
pIG0066 SV40-HA-NLS-dCas9-Linker 3AS-Uvr8-NLS-BGH pSB1C3 Chloramph.
pIG0067 SV40-HA-NLS-dCas9-Linker 3AS-Piff-NLS-BGH pSB1C3 Chloramph.
pIG1000 Siehe Liste unter Ornder "Aktivierung"
pIG1001 Siehe Liste unter Ornder "Aktivierung"
pIG1002 Siehe Liste unter Ornder "Aktivierung"
pIG1003 Siehe Liste unter Ornder "Aktivierung"
pIG2000 hU6 - precrRNA-site - CAG - dCas9, D10A pX334a Amp, Puro Multiplex Genome Engineering Using CRISPR/Cas Systems. Cong et al (Science. 2013 Jan 3. PubMed)
pIG2001 UVR8 - KRAB - NLS pKM102 Amp, Tet
pIG2002 tetO13 - CMVmin - SEAP pKM006 Amp, ColE1 Reporter Plasmid, in combination with pSAM200: constitutively high expression of SEAP
pIG2003 tetR - VP16 pSAM200 Amp, ColE1 Cis-activating fusion-protein of the used tetR-System
pIG2004 hU6 - precrRNA-site - CAG - dCas9, D10A, H840A - KRAB px334a Amp, Puro Zhang-plasmid, containing a H840A mutation, induced by side-directed mutagenesis (oIG2000 & 2001 / 2002 & 2003). Furtherly containing a KRAB domain, which originated from PCR amplification and subsequent Gibson Cloning of a pKM102 part (oIG2004 & oIG2005) with pX334a.
pIG2005 hU6 - precrRNA-site - CAG - dCas9, D10A, H840A pX334a Amp, Puro Zhang-plasmid, containing a H840A mutation, induced by side-directed mutagenesis (oIG2000-oIG2001, oIG2002-oIG2007). Gibson cloned of three PCR-fragments: oIG2000-oIG2001, oIG2002-oIG2007, oIG2008-oIG2009
pIG2006 hU6 - CMVmin-crRNA - HA - NLS - dCas9 - NLS pX334 Amp -
pIG2007 hU6 - CMV-crRNA - HA - NLS - dCas9 - NLS pX334 Amp -
pIG2008 hU6 - +230-crRNA - HA - NLS - dCas9 - NLS pX334 Amp -
pIG2009 hU6 - EMX-crRNA - HA - NLS - dCas9 - NLS pX334 Amp -
pIG2010 hU6 - CMVmin-crRNA - HA - NLS - dCas9 - KRAB - NLS pX334 Amp -
pIG2011 hU6 - CMV-crRNA - HA - NLS - dCas9 - KRAB - NLS pX334 Amp -
pIG2012 hU6 - +230-crRNA - HA - NLS - dCas9 - KRAB - NLS pX334 Amp -
pIG2013 hU6 - EMX-crRNA - HA - NLS - dCas9 - KRAB - NLS pX334 Amp -
pIG2014 hU6 - CMVmin-crRNA - HA - NLS - dCas9_H840A - NLS pX334 Amp -
pIG2015 hU6 - CMV-crRNA - HA - NLS - dCas9_H840A - NLS pX334 Amp -
pIG2016 hU6 - +230-crRNA - HA - NLS - dCas9_H840A - NLS pX334 Amp -
pIG2017 hU6 - EMX-crRNA - HA - NLS - dCas9_H840A - NLS pX334 Amp -
pIG2018 hU6 - +30-crRNA - HA - NLS - dCas9 - NLS pX334 Amp -
pIG2019 hU6 - +30-crRNA - HA - NLS - dCas9 - KRAB - NLS pX334 Amp
pIG2020 hU6 - +30-crRNA - HA - NLS - dCas9_H840A - NLS pX334 Amp
pIG2021 hU6 - Vegf II-crRNA - HA - NLS - dCas9 - KRAB - NLS pX334 Amp
pIG2022 hU6 - Vegf III-crRNA - HA - NLS - dCas9 - KRAB - NLS pX334 Amp
pIG3001 dCas9-mCherry pMZ333 Amp Backbone was cut out of pMZ333 by NotI and XbaI; dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333; Assembly was performed using Gibson PCR
pIG3002 HA-NLS-dCas9-mCherry-NLS pMZ333 Amp Backbone was cut out of pMZ333 by NotI and XbaI; HA-NLS-dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, the C-terminal NLS (different codon usage) was intoduced with a primer overlap; Assembly was performed using Gibson PCR
pIG3003 HA-dCas9-mCherry-NLS pMZ333 Amp Backbone was cut out of pMZ333 by NotI and XbaI; dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, the C-terminal NLS (different codon usage) and HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR
pIG3004 HA-NLS-dCas9-mCherry pMZ333 Amp Backbone was cut out of pMZ333 by NotI and XbaI; HA-NLS-dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333; Assembly was performed using Gibson PCR
pIG3005 HA-ERT2-NLS-dCas9-mCherry-NLS-ERT2 pMZ333 Amp Backbone was cut out of pMZ333 by NotI and XbaI; NLS-dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the C-terminal NLS (different codon usage) and the HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR
pIG3006 HA-NLS-dCas9-mCherry-NLS-ERT2 pMZ333 Amp Backbone was cut out of pMZ333 by NotI and XbaI; HA-NLS-dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the C-terminal NLS (different codon usage) was intoduced with a primer overlap; Assembly was performed using Gibson PCR
pIG3007 HA-ERT2-NLS-dCas9-mCherry-NLS pMZ333 Amp Backbone was cut out of pMZ333 by NotI and XbaI; NLS-dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the C-terminal NLS (different codon usage) and the HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR
pIG3008 HA-dCas9-mCherry-NLS-ERT2 pMZ333 Amp Backbone was cut out of pMZ333 by NotI and XbaI; dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the C-terminal NLS (different codon usage) and the HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR
pIG3009 HA-ERT2-NLS-dCas9-mCherry pMZ333 Amp Backbone was cut out of pMZ333 by NotI and XbaI; NLS-dCas9 was amplified by PCR (Primer with overlaps) from pX334a, mCherry from pMZ333, ERT2 from pMItom, the HA-Tag were intoduced with a primer overlap; Assembly was performed using Gibson PCR
pIG3010 - pX334a amp pX334a was digested with PstI to get rid of dCas9 and religated
pIG3011 SEAP-Targetsequence I pX334a amp pIG3010 was opened with BbsI and SEAP-Targetsequence I was inserted (oIG3013 + 14)
pIG3012 SEAP-Targetsequence II pX334a amp pIG3010 was opened with BbsI and SEAP-Targetsequence II was inserted (oIG3015 + 16)
pIG4000 oMZ700PhyB (1-605) - mCherry-sv40pA bla,ColE1 mCherry was first PCR amplified from pMZ300 with oligos oMZ701/oMZ706, further amplified with oligos oMZ703/oMZ707, and Gibson-cloned into pMZ331 cut with XbaI/EcoRI
pIG4001 PhyB (1-908) - mCherry- sV40pA bla,ColE1 mCherry was first PCR amplified from pMZ300 with oligos oMZ701/oMZ706, further amplified using the oligos oMZ704/oMZ707 and Gibson-cloned into pMZ358 cut with XbaI/EcoRI.
pIG4002 hU6 - precrRNA-site - CAG - dCas9, D10A AmpR Multiplex Genome Engineering Using CRISPR/Cas Systems. Cong et al (Science. 2013 Jan 3. PubMed)
pIG4003 PIF3- mEGFP-sV40pA bla,ColE1 mEGFP was first PCR amplified from pMZ1050 with oligos oMZ728/oMZ729 and backbone pMZ354 was PCR amplified with oMZ726/oMZ727 for Gibson-Cloning.
pIG4004 PhyB(1-605)- mCherry- dCas9-sV40pA pMZ700 bla,ColE1 mCherry was amplified from pMZ700 with oligos oHB058/ oHB059, dCas9 (hSpCsn1) was amplified from pMZ1025 with oHB060/ oHB061 and Gibson- Cloned into pMZ700 (after digestion of with XbaI/ EcorI
pIG4005 PhyB(1-908)- mCherry- dCas9-sV40pA pMZ701 bla,ColE1 mCherry was amplified from pIG4001 with oligos oIG4004/ oIG4001, dCas9 (hSpCsn1) was amplified from pHB1025 with oIG4002/ oIG4003 and Gibson- Cloned into pMZ701 (after digestion of with XbaI/ EcorI
pIG4006 PhyB(1-908)- mCherry- dCas9 (with NLS)-sV40pA pMZ701 bla,ColE1 mCherry was amplified from pIG4001 with oligos oIG4004/ oIG4001, dCas9 (hSpCsn1) was amplified from pIG4002 with oIG4002/ oIG4005 (+NLS!) and Gibson- Cloned into pIG4001(after digestion of pIG4001 with XbaI/ EcorI)
pIG4007 PhyB(1-650)- mCherry- dCas9 (with NLS)-sV40pA pMZ701 bla,ColE1 mCherry was amplified from pIG4000 with oligos oIG4000/ oIG4001, dCas9 (hSpCsn1) was amplified from pHB1025 with oIG4002/ oIG4005 and Gibson- Cloned into pIG4000 (after digestion of pIG4000 with XbaI/ EcorI
pIG6000 pSb1C3_-Nhe1-pCMV-Sac2-eGFP-SalI-BanH1-NLS-terminator-Hind3-Kpn1-pSb1C3 CMV promotor was amplified from Plasmid golgi-Gfp 405(kindly provided by toolbox) using oIG6000 and oIG6001. Avgfp was amplified from Plasmid golgi-Gfp 405 using oIG6002 and oIG6003. (iGEM cutting site was eliminated) BamH1 and Sal1were introduced to provide restrcitionsites for the insertion of caspase cleavage sites. a NLS was introduced. the terminator was amplified from Plasmid pmh 105 using oIG6022 and oIG6023. thereby Kpn1 und Nhe1 and the iGEM restrcitionsites Spe1 and Not1 were reestablished. Plasmid pSB1C3 serving as backbone was cut with Xba1 and Pst1. The 4 construts were fused together with a Gibson Assemby approach.
pIG6001 pSb1C3_-Nhe1-pCMV-Sac2-CFP-SalI-BanH1-NLS-terminator-Hind3-Kpn1-pSb1C3 CMV promotor was amplified from Plasmid golgi-Gfp 405(kindly provided by toolbox) using oIG6000 and oIG6001. ecfp was amplified from Plasmid pal 113 using oIG6002 and oIG6003. (iGEM cutting site was eliminated) BamH1 and Sal1were introduced to provide restrcitionsites for the insertion of caspase cleavage sites. a NLS was introduced. the terminator was amplified from Plasmid pmh 105 using oIG6022 and oIG6023. thereby Kpn1 und Nhe1 and the iGEM restrcitionsites Spe1 and Not1 were reestablished. Plasmid pSB1C3 serving as backbone was cut with Xba1 and Pst1. The 4 construts were fused together with a Gibson Assemby approach.
pIG8002 HA-NLS-dCas9-GSAGSAG-G9a_NLS pX334a amp
pIG8002_1 pIG8002 cut with BbsI and ligated with VEGF crRNA1
pIG8002_2 pIG8002 cut with BbsI and ligated with VEGF crRNA2
pIG8002_3 pIG8002 cut with BbsI and ligated with VEGF crRNA3
pIG8002_4 pIG8002 cut with BbsI and ligated with VEGF crRNA4
pIG8004 HA-NLS-dCas9-GSAGSAG-dG9a_NLS pX334a amp
pIG8004_1 pIG8004 cut with BbsI and ligated with VEGF crRNA1
pIG8004_2 pIG8004 cut with BbsI and ligated with VEGF crRNA2
pIG8004_3 pIG8004 cut with BbsI and ligated with VEGF crRNA3
pIG8004_4 pIG8004 cut with BbsI and ligated with VEGF crRNA4
pIG4100 tetO13 - CMV Promotor - SEAP - SV40 T405 Amp
pIG4101 pSV40 - NLS - dCas9 - NLS - Linker - PIF - SV40 Amp
pIG4102 pSV40 - PhyB - KRAB - SV40 Amp
pIG4103 pSV40 - NLS - dCas9 - NLS - Linker - UVR8 - SV40 Amp
pIG4104 pSV40 - COP1 - KRAB - SV40 Amp
pIG4105 pSV40 - NLS - dCas9 - NLS - Linker - CRY2 - SV40 Amp
pIG4106 pSV40 - CIB - VP16 - SV40 Amp
pIG4107 pSV40 - CIB - KRAB - SV40 Amp
pIG4108 crRNA tetO13 1.CC Amp
pIG4109 crRNA tetO13 2.CC Amp
pIG9000 hU6 - EMX-crRNA - HA - NLS - dCas9 - NLS px334a Amp