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| - | <div align='center'><img src="https://static.igem.org/mediawiki/2013/5/59/Overview.png" width="100%"/></div> | + | |
| - | <h1>Abstract</h1>
| + | <h1>Overview</h1> |
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| | + | <div align='center'><img src="https://static.igem.org/mediawiki/2013/5/59/Overview.png" width="70%"/></div> |
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| - | Our project focuses on developing a novel treatment for <a href="https://2013.igem.org/Team:Evry/Project_diseases"> hematological disorders</a> caused by an <a href="https://2013.igem.org/Team:Evry/Project_metabolism">iron overload</a>, such as hemochromatosis and thalassemia. These autosomal recessive disorders have symptoms including cirrhosis, arthritis, and heart failure, which result from overabsorption of iron from the duodenum. Although these are among the most common heritable diseases, treatment options are limited. Even today patients are mostly treated by frequent bloodletting, which <a href="https://2013.igem.org/Team:Evry/ HumanPractice/Patients_perceptions"> many people cannot support</a> . The aim of our project is to combat these diseases at the source by developing a therapy that prevents the intestinal absorption of iron. | + | Our Iron Coli Project deals with <a href="https://2013.igem.org/Team:Evry/Project_diseases"> hemochromatosis</a> . Hemochromatosis is an autosomal recessive disorder which is the most frequent genetic disease in Europe as it affects over two millions people. It is caused by a mutation on the HFE gene, which leads to an <a href="https://2013.igem.org/Team:Evry/ Project_metabolism"> overabsorption of iron</a> in the upper region of the intestine. This iron overload is stored in many organs and tissues, which eventually causes chronic insuficiences as heart, liver and kidney failures. |
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| - | We engineer the <i>Escherichia coli</i> <a href="https://2013.igem.org/Team:Evry/ Project_FUR"> Ferric Uptake Regulation</a> (FUR) system using a <a href="https://2013.igem.org/Team:Evry/ Inverter"> genetic inverter</a> so that they produce siderophores (< a href="https://2013. igem.org/ Team:Evry/Chelator"> iron chelators</ a> ) in response of high concentrations of iron. These engineered bacteria are delivered to the patient's intestine by encapsulating them in an ingestible polymer (<a href="https://2013.igem.org/Team:Evry/Pill_design">capsule</a> ) that specifically degrades in the duodenum. Once released into the intestine, the bacteria respond to ambient iron by secreting elevated levels of siderophores, thereby chelating the iron to prevent its absorption by the patient. | + | The only available treatment for patients suffering from hemochromatosic nowadays is blood-lettings. <a href="https://2013.igem.org/Team:Evry/ Seminar"> Discussing with patients</a> we discover that this treatment is time-consumming and is often barely tolerated. To find a solution, we worked on the creation of a bacterial treatment to prevent iron overload in hemochromatosis.</p> |
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| | + | We focused on a natural iron <a href="https://2013.igem.org/Team:Evry/ Project_FUR"> chelating molecule</a> called enterobactins that is produced in iron starvation case by < i>E. coli</ i> . For our project, we wanted to invert this natural behaviour, so <i>E. coli</ i> would produce these enterobactins in high iron concentration. To deliver our bacteria right in the duodenum where it would prevent the iron absorption, we also worked on the design of a gastro resistant <a href="https://2013.igem.org/Team:Evry/Pill_design">capsule</a>. |
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| - | The <b><span style="color:#bb8900">Iron</span><span style="color:#7B0000"> Coli</span> Project</b> deals with iron, and more precisely about the most frequent genetic disease related to that ion, <b>hemochromatosis</b>. In our human body, iron is essentially found under hemic structures. For example, iron is bound to hemoglobin inside red blood cells to transport oxygen. Moreover, iron binds to cytochrome and has a role in detoxification in the liver but also in energy production by the mitochondria.<br>
| + | We first wanted to know if our bacterial treatment would be accepted by the patients. Then, we conducted a <a href="https://2013.igem.org/Team:Evry/HumanPractice/Patients_perceptions">survey</a> to ask for their opinion. It appears that a majority of hemochromatosic patients would actually agree on taking our treatment. <br/> |
| - | So iron is essential to our human body for many metabolic pathways. In fact, it is finely regulated in our organism and unfortunately, the unbalance of this regulation leads to dramatic consequences. Our human body has a total pool of 4000 mg of iron. Every day, we absorb 1 mg by the upper intestine (duodenum and jejunum) and excrete 1 mg by tissue renewel (intestin, skin, hair, bleeding, etc...). However, a hemochromatosic patient absorbs on average 4 times more iron. On a long term, this patient accumulates iron in many organs which is very toxic in its free form. The only mechanism we have to decrease the blood level of iron is to store it in our tissues. Heart, liver, kidneys, muscles, all these organs start to store the iron, which enhances even more its toxicity. The main complications are chronic insuficiences such as heart, liver and kidney failures, but also intense fatigue and articulary pain.<br>
| + | We also created a <a href="https://2013.igem.org/Team:Evry/Safety">fault tree</a> to identify the consequences involved if <i>E. coli</i> will stay permantly or temporarily into the intestine. This study oriented our modelling team to a <a href="https://2013.igem.org/Team:Evry/flush_model">flush strategy</a>, meaning that <i>E. coli</i> only stays temporarily in the intestine. Their model predicted that our engineered <i>E. coli</i> (<b><span style="color:#bb8900">Iron</span><span style="color:#7B0000"> Coli</span></b>) could divide by two the amount of iron absorbed by a hemochromatosic patient.<br/> |
| - | Hemochromatosis is the most frequent genetic disease in Europe. The homozygous recessive mutation, C282Y, on the HFE protein is present at a rate of 1/300, but only 1 out of 1OO have the symptoms for hemochromatosis. This mutation leads to the deregulation of the iron overabsorption from the intestine. The only efficient treatment available is to remove 500 mM of blood at a frequency from once a week to twice a year. This treatment, although efficient, is time-consumming and is sometimes barely tolerated by the patients.<br>
| + | Knowing that our treatment would be accepted and beneficial to patients, we then focused on the biology of our project. We obtained two biobricks : an <a href="https://2013.igem.org/Team:Evry/Sensor">iron sensing device</a> and an <a href="https://2013.igem.org/Team:Evry/Inverter">inverter signal system</a>. |
| - | <br> | + | </p> |
| - | Our project focuses on finding an alternative treatment to these blood-lettings. To do so, we used a natural system found in E. coli where the bacteria produce iron chelators, called enterobactins, in case of iron starvation. Enterobactins are chelating molecules that have an affinity of 10^39 M^-1 for iron. For our <b><span style="color:#bb8900">Iron</span><span style="color:#7B0000"> Coli</span> Project</b>, we used the natural ability of E. coli to sense the environmental iron and reversed its behaviour to finally produce enterobactins in the presence of high iron concentrations. Then, we would like to put our engineered bacteria in a capsule designed to target the duodenum and jejunum and to release our bacteria in this area. The iron is then chelated by our Iron Coli and prevents the absorption from the intestine to the blood, which is our goal to cure hemochromatosis.<br>
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| - | As a first step, it was crucial to ask for the patients opinion about such a bacterial treatment. Through a survey (N = 270), we asked them if they would take this treatment if it was allowed by the national agency of drug safety. A majority (56%) answered "yes". Additionally, by the use of a fault tree, we screened all the possible major consequences of this kind of bacteria in the intestine. We figured out that if our Iron coli stays permanently in the intestine, which means that it would colonize the intestine, it involves too much risks and danger. This is why we favored a strategy based on the bacteria staying temporarily in the intestine. That is what we called the flush strategy, where we want our E.coli to be flushed out of the intestin. This way, it would produce its enterobactins, the iron chelators, in the upper intestine and then die afterwards.<br>
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| - | Our team first created a model to predict if Iron Coli can chelate sufficient amount of iron in the duodenum and jejunum to prevent the absorption. Based on an ODE model, they came to the conclusion that the iron absorption of a hemochromatosic patient can be divided by two, considering the enterobactins being instantly produced and the flush lasting 42 seconds. This decrease of the iron absorbed is especially advantageous for working patients as blood-lettings are time-consuming and reducing its frequency would be a huge benefit for the patients.<br>
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| - | Now that we knew the project would be accepted by the patients and that our bacterial treatment would be beneficial to them, we focused on the biology side of our project. Our strain, Iron Coli, has the ability to sense iron, reverse its behaviour and produce enterobactins in case of high iron concentrations.
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| - | To obtain our sensing device, we first screened the genome of E. coli in order to find promoter regions under the control of iron variations. Out of the 15 promoters we screened, only these following were evaluated: FepA, Fes, AceB and YncE. It came out the pAceB was the most sensitive to iron variations and we kept this one for further analysis. In fact, this promoter, as all the others, has the ability to repress the expression of the gene downstream thanks to an interactions with. This justifies the need of an inverter where we reverse this behaviour by replacing the downstream by a the coding sequence of the LacI protein. Indeed, after cotransformation with a reporter plasmid containing pLacO-mRFP, the RFP is expressed in case of high concentrations of iron and repressed when the iron is low. Finally, the last step in the design of Iron oli is to produce these enterobactins. Their maturation requires 6 genes: EntA, EntB, EntC, EntD, EntE and EntF. We tried to solve a second issue by a model: what are the consequence by overproducing the enterobactins inside an E. coli strain? Using a FLux Balance Analysis, we came to the conclusion that the side pathways that use chorismate and isochorismate have a minor effect on the enterobactin production. Moreover, the enterobaction production reaches a plateau and finally, we need to add chorismate in the medium if we want to produce them. However, our third model predicts that these enterobactins are produced only after 5 hours after the iron in the environment is sensed. The cloning of these 6 genes was the hardest step and still, it remained unfinished
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| | + | We wonder how much time it would take for our <b><span style="color:#bb8900">Iron</span><span style="color:#7B0000"> Coli</span></b> to produce enterobactin and if overproducing them would unbalance <i>E. coli</i> metabolism. Results obtained from the <a href="https://2013.igem.org/Team:Evry/Metabolism_model">Flux Balance Analysis</a> and a <a href="https://2013.igem.org/Team:Evry/Modelmeta3">differencial equation model</a> leads our biologists to optimize their construction and design a <a href="https://2013.igem.org/Team:Evry/Pill_design">delivery capsule</a>. |
| | + | </p> |
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| | + | Through our project, we managed to made an integrated <a href="https://2013.igem.org/Team:Evry/HumanPractice">human practice</a> study as well as creating useful <a href="https://2013.igem.org/Team:Evry/Modeling">models</a> that both equally contributed to the realisation of our final project. |
| | </p> | | </p> |
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| | </div> | | </div> |
Overview
Our Iron Coli Project deals with hemochromatosis. Hemochromatosis is an autosomal recessive disorder which is the most frequent genetic disease in Europe as it affects over two millions people. It is caused by a mutation on the HFE gene, which leads to an overabsorption of iron in the upper region of the intestine. This iron overload is stored in many organs and tissues, which eventually causes chronic insuficiences as heart, liver and kidney failures.
The only available treatment for patients suffering from hemochromatosic nowadays is blood-lettings. Discussing with patients we discover that this treatment is time-consumming and is often barely tolerated. To find a solution, we worked on the creation of a bacterial treatment to prevent iron overload in hemochromatosis.
We focused on a natural iron chelating molecule called enterobactins that is produced in iron starvation case by E. coli. For our project, we wanted to invert this natural behaviour, so E. coli would produce these enterobactins in high iron concentration. To deliver our bacteria right in the duodenum where it would prevent the iron absorption, we also worked on the design of a gastro resistant capsule.
We first wanted to know if our bacterial treatment would be accepted by the patients. Then, we conducted a survey to ask for their opinion. It appears that a majority of hemochromatosic patients would actually agree on taking our treatment.
We also created a fault tree to identify the consequences involved if E. coli will stay permantly or temporarily into the intestine. This study oriented our modelling team to a flush strategy, meaning that E. coli only stays temporarily in the intestine. Their model predicted that our engineered E. coli (Iron Coli) could divide by two the amount of iron absorbed by a hemochromatosic patient.
Knowing that our treatment would be accepted and beneficial to patients, we then focused on the biology of our project. We obtained two biobricks : an iron sensing device and an inverter signal system.
We wonder how much time it would take for our Iron Coli to produce enterobactin and if overproducing them would unbalance E. coli metabolism. Results obtained from the Flux Balance Analysis and a differencial equation model leads our biologists to optimize their construction and design a delivery capsule.
Through our project, we managed to made an integrated human practice study as well as creating useful models that both equally contributed to the realisation of our final project.
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