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Team:INSA Toulouse/contenu/lab practice/notebook/calendar/MG1655
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In order to use this strain for light sensors characterization, we need to delete the <i>envZ</i> gene. For this we did a transduction of the strain with phages previously mixed with the del(EnvZ) strain from the Keio collection. | In order to use this strain for light sensors characterization, we need to delete the <i>envZ</i> gene. For this we did a transduction of the strain with phages previously mixed with the del(EnvZ) strain from the Keio collection. | ||
<br>The strains from this collection have individual kan cassette replacements of non-essential genes flanked by FRT sites allowing excision using the FLP recombinase. | <br>The strains from this collection have individual kan cassette replacements of non-essential genes flanked by FRT sites allowing excision using the FLP recombinase. | ||
| + | <br> <a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/integration" target="_blank"> View Protocols </a> | ||
<br>6/09 | <br>6/09 | ||
<br>overnight culture of the Keio Del(EnvZ) Strain in LB and CaCl2 | <br>overnight culture of the Keio Del(EnvZ) Strain in LB and CaCl2 | ||
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<li><span class="spantitle2">Week 10 (12-18 August)</span><br> | <li><span class="spantitle2">Week 10 (12-18 August)</span><br> | ||
Then we needed to remove the Kn cassette with the FLIP recombinase, in order to integrate with a selection factor Kn. | Then we needed to remove the Kn cassette with the FLIP recombinase, in order to integrate with a selection factor Kn. | ||
| + | <br> <a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/integration" target="_blank"> View Protocols </a> | ||
<br> | <br> | ||
<br>12/09 | <br>12/09 | ||
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<br>Then in order to integrate modules in the genome with integration plasmids, the strain needs to be Streptomycine resistant for selection. | <br>Then in order to integrate modules in the genome with integration plasmids, the strain needs to be Streptomycine resistant for selection. | ||
<br>The strain has the Streptomycine resistance gene but with a mutation. With several spread on LB agar Strp, the strain can recover the resistance. | <br>The strain has the Streptomycine resistance gene but with a mutation. With several spread on LB agar Strp, the strain can recover the resistance. | ||
| + | <br> <a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/integration" target="_blank"> View Protocols </a> | ||
<br>Spread on LB Str 50ng during a night at 37°c. | <br>Spread on LB Str 50ng during a night at 37°c. | ||
<br> | <br> | ||
Revision as of 18:16, 3 October 2013
Calendar
MG1655 del(EnvZ) Strain
August 2013
- Week 9 (5-11 August)
In order to use this strain for light sensors characterization, we need to delete the envZ gene. For this we did a transduction of the strain with phages previously mixed with the del(EnvZ) strain from the Keio collection.
The strains from this collection have individual kan cassette replacements of non-essential genes flanked by FRT sites allowing excision using the FLP recombinase.
View Protocols
6/09
overnight culture of the Keio Del(EnvZ) Strain in LB and CaCl2
7/09
dilution of the overnight culture of del(envZ) strain until DO=1
a mix of bacterias with P1 phages is spread on soft LB agar for the night at 30°
overnight culture of the MG1655 strain
8/09
pick up of phage with bacterias
dilution of the overnight culture of MG1655 in LB and CaCl2 until DO=1
mix of bacterias (MG1655) with phages
incubation a night at 37°c
9/09
verification of lysis plaque
- Week 10 (12-18 August)
Then we needed to remove the Kn cassette with the FLIP recombinase, in order to integrate with a selection factor Kn.
View Protocols
12/09
Transformation with the pFLP plasmid.
One night on LB agar plate at 30°C
13/09
Pick 4 clones and cultivate in liquid 2hours at 30°C then 3 hours at 42°C.
Dilution and spread on LB Agar.
14/09
Pick isolated clones on LB Agar, LB Cm, LB Ap and LB Kn.
Let one night at 42°C.
Right clones are Cm S, Ap S and Kn S.
15/08
Clones are ok.
Waiting for the primers to verify with PCR.
- Week 11 (19-25 August)
19/08
PCR verification: ok ! The del(envZ) deFRT Kn is constructed!! Thanks to the wonderful help of Caroline Schiavon
20/08
Then in order to integrate modules in the genome with integration plasmids, the strain needs to be Streptomycine resistant for selection.
The strain has the Streptomycine resistance gene but with a mutation. With several spread on LB agar Strp, the strain can recover the resistance.
View Protocols
Spread on LB Str 50ng during a night at 37°c.
21/08
Several clones have grown but the right Strepto concentration was 200ng/µL.
Spread on LB Str 200ng during a night at 37°C
22/08
One clone on the plate
Subcloned the clone on spread on LB Str 200ng over the night at 37°C
23/08
Few other clones have grown
Subcloned of these clones and spread on LB Str 200ng at 37°C
25/08
Competent cells of the new strain: MG1655 del(envZ) deFRT Kn StrpR.
Transformation with the plasmid pMS58
Spread on LB Cm over the night at 30°C
- Week 12 (26-1 September)
26/08
streak 4 clones of the previous transformation on LB Cm at 42°C one night
27/08
Streak 4 clones of the first integration on LB Cm at 42°C one night
28/08
Streak 4 clones of the second integration on LB Strp 42°C one night
29/08
Sub-cloned few clones on LB Cm, LB Str and LB Kn at 42°C one night
Right clone are StR CmS et KnR
30/08
Our clones were StrR, but unfortunately they were CmR and KnS…
Restart of the integration from the beginning:
Making competent cells
In parallele, spread of the MG1655 del(envZ) deFRT Kn StrpR strain on LB Cm, LB Str and LB Kn at 42°C
September 2013
- Week 13 (2-8 September)
2/09
Stop of the integration: the MG1655 del(envZ) deFRT Kn StrpR strain was already CmR…
Because of a lack of time, we need to concentrate the force on the wiki, there is few weeks left…
