Team:INSA Toulouse/contenu/lab practice/results/polT7

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   <h1 class="title1">Results</h1>
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   <h1 class="title1">Results - T7 Polymerase Characterization</h1>
    
    
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   <h2 class="title2">T7 Polymerase Characterization</h2>
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   <h2 class="title2">Objective</h2>
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Characterize the activity of T7 polymerase with an RFP reporter under a T7 promoter. Reminder: T7 polymerase is necessary in our system to activate the two T7 promoters in the AND1 and AND2 gate.
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  <h2 class="title2">Conception</h2>
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The following constructions were designed:<br>
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  <img src="https://static.igem.org/mediawiki/2013/0/07/Result_polT7_1.jpg" class="imgcenter" /><br>
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Coding sequence of T7 polymerase was extracted from the genome of E.Coli BL21-DE3. Cloning are necessary to add a promoter, a rbs and a terminator.  The expected functioning is:
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- Production  of RFP  if  T7 polymerase is present  (red colonies)
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- Absence of RFP if T7 polymerase is absent (white colonies)<br><br>
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  <h2 class="title2">Result</h2>
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Cloning to add a promoter and a rbs to T7 polymerase was a success but Cloning for adding a terminator to T7 polymerase was never achieved.
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Nevertheless, a new biobrick pT7-RFP was created!
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Following is the electrophoresis gel showing that we obtained a fragment of expected length (829 bp) by restriction EcoRI/PstI:<br>
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  <img src="https://static.igem.org/mediawiki/2013/f/f9/Result_polT7_2.jpg" class="imgcenter" /><br>
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Further verifications were done with phenotypic test. Plasmid was transformed into competent BL21-DE3. BL21-DE3 is the strain containing T7 polymerase under of Lac promoter (inductible with IPTG). 
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White colonies was obtained into petri dish and red colonies into petri dish with IPTG
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   <img src="https://static.igem.org/mediawiki/2013/4/43/Result_polT7_3.jpg" class="imgcenter" /><br>
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   <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
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  <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
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  <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
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<img style="width:20px"  src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
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  <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
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<img style="width:20px"  src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
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  <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
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  <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
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  <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
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  <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
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  <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
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<h3 class="title3">General inductor</h3>
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  <p class="texte">The couple TetR-pTet system construction is a first step to characterize the entire system. A constitutive promoter (BBa_J23116) was assemble to tetR and then assemble to pTet-rbs-RFP-term (Bba_I13521). pTet is a regulator constitutively ON that expresses the mRFP1 protein. TetR is an inducer that binds to pTet promoter and thus, represses expression the downstream system. Supply of tetracycline or its analog aTc (anhydrotetracycline) is known to bind to tetR and invert the operation (inhibits expression of mRFP in this case).<br>
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After 18 hours, clones containing this assembly (BBa_J23116-TetR-pTet-RFP) show a leaky basal expression of mRFP. We suppose that the promoter was too weak to express TetR in large quantity. Assembly of a stronger promoter could improve the system and lock the response to an ON/OFF response. <br>
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Besides, an experience was done to analyze the effect of the aTc inducer. Result show a visible induction of the red fluorescent protein expression by addition of aTC (60 ng/mL).</p>
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  <h2 class="title2">Dicussion</h2>
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The biobrick behave as expected. It was submitted to the registry (lien BBa_K1132045). Further characterization can be done concerning the activity of T7 polymerase, looking to the production of RFP during time.

Revision as of 20:10, 3 October 2013

logo


Results - T7 Polymerase Characterization

Objective

Characterize the activity of T7 polymerase with an RFP reporter under a T7 promoter. Reminder: T7 polymerase is necessary in our system to activate the two T7 promoters in the AND1 and AND2 gate.

Conception

The following constructions were designed:

Coding sequence of T7 polymerase was extracted from the genome of E.Coli BL21-DE3. Cloning are necessary to add a promoter, a rbs and a terminator. The expected functioning is: - Production of RFP if T7 polymerase is present (red colonies) - Absence of RFP if T7 polymerase is absent (white colonies)

Result

Cloning to add a promoter and a rbs to T7 polymerase was a success but Cloning for adding a terminator to T7 polymerase was never achieved. Nevertheless, a new biobrick pT7-RFP was created! Following is the electrophoresis gel showing that we obtained a fragment of expected length (829 bp) by restriction EcoRI/PstI:

Further verifications were done with phenotypic test. Plasmid was transformed into competent BL21-DE3. BL21-DE3 is the strain containing T7 polymerase under of Lac promoter (inductible with IPTG). White colonies was obtained into petri dish and red colonies into petri dish with IPTG


Dicussion

The biobrick behave as expected. It was submitted to the registry (lien BBa_K1132045). Further characterization can be done concerning the activity of T7 polymerase, looking to the production of RFP during time.