Team:TU-Eindhoven/Notebook

From 2013.igem.org

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Revision as of 19:05, 6 August 2013

In this section you can find a small description of all the work we have done so far organized by the category it belongs to.

Feb-Apr

Feb-Mar

Background research

Mar-Apr

Selection of topic
Further research
Selection of project

Apr-May

Further research

May

1-5 May

General Activities

Regular team meeting
Looking for sponsors
Month planning

Wetlab

Researching about the promoters
Researching about the possible proteins for CEST imaging

Drylab

Defining what needs to be modeled and what type of model is the most appropriate for it

6-12 May

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Researching and defining the killing mechanism

Drylab

Starting the Molecular Dynamics model for the proteins selection.

13-19 May

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Defining the needed materials
Defining the needed equipment

Drylab

Continuing the Molecular Dynamics model for the proteins selection.

20-26 May

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Locating, booking and learning how to use the necessary equipment

Drylab

Analyzing the results from the Molecular Dynamics model for the proteins selection and identifying the most useful proteins for CEST imaging
Researching and defining the needed parameters for the analysis of the decoy sites through a stochastic simulations model

Human Practices

Selecting a main project

27-31 May

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Locating, booking and learning how to use the necessary equipment

Drylab

Starting the stochastic simulations for the analysis of the decoy sites

Human Practices

Selecting a main project

June

3-9 June

General Activities

Regular team meeting
Looking for sponsors
Collaborating with Purdue iGEM team
Planning month activities

Wetlab

General construct design

Drylab

Continuing the stochastic simulations for the analysis of the decoy sites

Human Practices

Defining the structure of the fact checker project

10-16 June

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Protein design

Drylab

Continuing the stochastic simulations for the analysis of the decoy sites

Human Practices

Redacting the preliminary description and survey for collaborators of the fact checker project

17-23 June

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Final design of the constructs

Drylab

Continuing the stochastic simulations for the analysis of the decoy sites

Human Practices

Revising the preliminary description and survey for collaborators of the fact checker project

24-30 June

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Ordering the constructs
Working on the protocols

Drylab

Analyzing the results from the stochastic simulations for the analysis of the decoy sites

Human Practices

Researching for facts and myths related to Synthetic Biology to be checked

July

1-7 July

General Activities

Regular team meeting
Looking for sponsors
Planning month activities

Wetlab

Finalizing the protocols
Planning lab schedule

Drylab

Starting the ODE model for the analysis of the FNR promoter

Human Practices

Researching for facts and myths related to Synthetic Biology to be checked

8-14 July

General Activities

Regular team meeting
Looking for sponsors
Collaborating with Purdue iGEM team

Drylab

Continuing the ODE model for the analysis of the FNR promoter

Human Practices

Researching for facts and myths related to Synthetic Biology to be checked

15-21 July

22-28 July

General Activities

Regular team meetings
Looking for sponsors
Collaborating with Purdue iGEM team

Wetlab

Creating agar plates
Transforming DNA
Plating bacteria
Making LB medium
Creating small cultures
DNA retention from cultures
Nano-drop tests

Drylab

Analyzing the results from the ODE model for the analysis of the FNR promoter

Human Practices

Researching for facts and myths related to Synthetic Biology to be checked
Sending the survey to collaborators

29-31 July

General Activities

Regular team meetings
Looking for sponsors

Wetlab

Creating agar plates
Transforming DNA
Plating bacteria
Making LB medium
Creating small cultures
DNA retention from cultures
Nano-drop tests

Drylab

Merging the stochastic simulations model for the decoy sites with the ODE model for the FNR promoter

Human Practices

Researching for facts and myths related to Synthetic Biology to be checked

August

1-4 August

...

5-11 August

...

12-18 August

...

19-25 August

...

26-31 August

...

September

2-8 Sept

...

9-15 Sept

...

16-22 Sept

...

23-29 Sept

...

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 * Analyzing the results from the Molecular Dynamics model for the proteins selection and identifying the most useful proteins for CEST imaging
 * Researching and defining the needed parameters for the analysis of the decoy sites through a stochastic simulations model
+''Human Practices''
+* Selecting a main project
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 ''Drylab''
 * Starting the stochastic simulations for the analysis of the decoy sites
+''Human Practices''
+* Selecting a main project
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 ''Drylab''
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+''Human Practices''
+* Defining the structure of the fact checker project
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 ''Drylab''
 * Continuing the stochastic simulations for the analysis of the decoy sites
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 * Continuing the stochastic simulations for the analysis of the decoy sites
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 * Analyzing the results from the stochastic simulations for the analysis of the decoy sites
+''Human Practices''
+* Researching for facts and myths related to Synthetic Biology to be checked
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 * Starting the ODE model for the analysis of the FNR promoter
+''Human Practices''
+* Researching for facts and myths related to Synthetic Biology to be checked
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+* Researching for facts and myths related to Synthetic Biology to be checked
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 * Analyzing the results from the ODE model for the analysis of the FNR promoter
+''Human Practices''
+* Researching for facts and myths related to Synthetic Biology to be checked
+* Sending the survey to collaborators
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 ''Drylab''
 * Merging the stochastic simulations model for the decoy sites with the ODE model for the FNR promoter
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+* Researching for facts and myths related to Synthetic Biology to be checked
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