Team:TU-Eindhoven/Notebook
From 2013.igem.org
(Difference between revisions)
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* Analyzing the results from the Molecular Dynamics model for the proteins selection and identifying the most useful proteins for CEST imaging | * Analyzing the results from the Molecular Dynamics model for the proteins selection and identifying the most useful proteins for CEST imaging | ||
* Researching and defining the needed parameters for the analysis of the decoy sites through a stochastic simulations model | * Researching and defining the needed parameters for the analysis of the decoy sites through a stochastic simulations model | ||
+ | |||
+ | |||
+ | ''Human Practices'' | ||
+ | * Selecting a main project | ||
{{:Team:TU-Eindhoven/Template:TimelineEnd}} | {{:Team:TU-Eindhoven/Template:TimelineEnd}} | ||
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''Drylab'' | ''Drylab'' | ||
* Starting the stochastic simulations for the analysis of the decoy sites | * Starting the stochastic simulations for the analysis of the decoy sites | ||
+ | |||
+ | |||
+ | ''Human Practices'' | ||
+ | * Selecting a main project | ||
{{:Team:TU-Eindhoven/Template:TimelineEnd}} | {{:Team:TU-Eindhoven/Template:TimelineEnd}} | ||
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''Drylab'' | ''Drylab'' | ||
* Continuing the stochastic simulations for the analysis of the decoy sites | * Continuing the stochastic simulations for the analysis of the decoy sites | ||
+ | |||
+ | |||
+ | ''Human Practices'' | ||
+ | * Defining the structure of the fact checker project | ||
{{:Team:TU-Eindhoven/Template:TimelineEnd}} | {{:Team:TU-Eindhoven/Template:TimelineEnd}} | ||
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''Drylab'' | ''Drylab'' | ||
* Continuing the stochastic simulations for the analysis of the decoy sites | * Continuing the stochastic simulations for the analysis of the decoy sites | ||
+ | |||
+ | |||
+ | ''Human Practices'' | ||
+ | * Redacting the preliminary description and survey for collaborators of the fact checker project | ||
{{:Team:TU-Eindhoven/Template:TimelineEnd}} | {{:Team:TU-Eindhoven/Template:TimelineEnd}} | ||
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''Drylab'' | ''Drylab'' | ||
* Continuing the stochastic simulations for the analysis of the decoy sites | * Continuing the stochastic simulations for the analysis of the decoy sites | ||
+ | |||
+ | |||
+ | ''Human Practices'' | ||
+ | * Revising the preliminary description and survey for collaborators of the fact checker project | ||
{{:Team:TU-Eindhoven/Template:TimelineEnd}} | {{:Team:TU-Eindhoven/Template:TimelineEnd}} | ||
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''Drylab'' | ''Drylab'' | ||
* Analyzing the results from the stochastic simulations for the analysis of the decoy sites | * Analyzing the results from the stochastic simulations for the analysis of the decoy sites | ||
+ | |||
+ | ''Human Practices'' | ||
+ | * Researching for facts and myths related to Synthetic Biology to be checked | ||
{{:Team:TU-Eindhoven/Template:TimelineEnd}} | {{:Team:TU-Eindhoven/Template:TimelineEnd}} | ||
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* Starting the ODE model for the analysis of the FNR promoter | * Starting the ODE model for the analysis of the FNR promoter | ||
+ | |||
+ | |||
+ | ''Human Practices'' | ||
+ | * Researching for facts and myths related to Synthetic Biology to be checked | ||
{{:Team:TU-Eindhoven/Template:TimelineEnd}} | {{:Team:TU-Eindhoven/Template:TimelineEnd}} | ||
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''Drylab'' | ''Drylab'' | ||
* Continuing the ODE model for the analysis of the FNR promoter | * Continuing the ODE model for the analysis of the FNR promoter | ||
+ | |||
+ | |||
+ | ''Human Practices'' | ||
+ | * Researching for facts and myths related to Synthetic Biology to be checked | ||
+ | |||
{{:Team:TU-Eindhoven/Template:TimelineEnd}} | {{:Team:TU-Eindhoven/Template:TimelineEnd}} | ||
{{:Team:TU-Eindhoven/Template:Timeline | day=15-21 | month=July | year= }} | {{:Team:TU-Eindhoven/Template:Timeline | day=15-21 | month=July | year= }} | ||
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''Drylab'' | ''Drylab'' | ||
* Analyzing the results from the ODE model for the analysis of the FNR promoter | * Analyzing the results from the ODE model for the analysis of the FNR promoter | ||
+ | |||
+ | |||
+ | ''Human Practices'' | ||
+ | * Researching for facts and myths related to Synthetic Biology to be checked | ||
+ | * Sending the survey to collaborators | ||
{{:Team:TU-Eindhoven/Template:TimelineEnd}} | {{:Team:TU-Eindhoven/Template:TimelineEnd}} | ||
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''Drylab'' | ''Drylab'' | ||
* Merging the stochastic simulations model for the decoy sites with the ODE model for the FNR promoter | * Merging the stochastic simulations model for the decoy sites with the ODE model for the FNR promoter | ||
+ | |||
+ | |||
+ | ''Human Practices'' | ||
+ | * Researching for facts and myths related to Synthetic Biology to be checked | ||
{{:Team:TU-Eindhoven/Template:TimelineEnd}} | {{:Team:TU-Eindhoven/Template:TimelineEnd}} | ||
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{{:Team:TU-Eindhoven/Template:TimelineTop | unit=September | nr=}} | {{:Team:TU-Eindhoven/Template:TimelineTop | unit=September | nr=}} | ||
- | {{:Team:TU-Eindhoven/Template:Timeline | day=2-8 | month= | + | {{:Team:TU-Eindhoven/Template:Timeline | day=2-8 | month=Sept | year= }} |
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- | {{:Team:TU-Eindhoven/Template:Timeline | day=9-15 | month= | + | {{:Team:TU-Eindhoven/Template:Timeline | day=9-15 | month=Sept | year= }} |
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- | {{:Team:TU-Eindhoven/Template:Timeline | day=23-29 | month= | + | {{:Team:TU-Eindhoven/Template:Timeline | day=23-29 | month=Sept | year= }} |
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Revision as of 19:05, 6 August 2013
![](https://static.igem.org/mediawiki/2013/6/6d/TU-Eindhoven_Images_LogoTransp.png)
![](https://static.igem.org/mediawiki/2013/3/32/TU-Eindhoven_Images_MRiGEM.png)
![](http://2013.igem.org/wiki/images/4/45/TU-Eindhoven_iGEM_small.png)
In this section you can find a small description of all the work we have done so far organized by the category it belongs to.
Feb-Apr
- Background research
- Selection of topic
- Further research
- Selection of project
- Further research
May
General Activities
- Regular team meeting
- Looking for sponsors
- Month planning
Wetlab
- Researching about the promoters
- Researching about the possible proteins for CEST imaging
Drylab
- Defining what needs to be modeled and what type of model is the most appropriate for it
General Activities
- Regular team meeting
- Looking for sponsors
Wetlab
- Researching and defining the killing mechanism
Drylab
- Starting the Molecular Dynamics model for the proteins selection.
General Activities
- Regular team meeting
- Looking for sponsors
Wetlab
- Defining the needed materials
- Defining the needed equipment
Drylab
- Continuing the Molecular Dynamics model for the proteins selection.
General Activities
- Regular team meeting
- Looking for sponsors
Wetlab
- Locating, booking and learning how to use the necessary equipment
Drylab
- Analyzing the results from the Molecular Dynamics model for the proteins selection and identifying the most useful proteins for CEST imaging
- Researching and defining the needed parameters for the analysis of the decoy sites through a stochastic simulations model
Human Practices
- Selecting a main project
General Activities
- Regular team meeting
- Looking for sponsors
Wetlab
- Locating, booking and learning how to use the necessary equipment
Drylab
- Starting the stochastic simulations for the analysis of the decoy sites
Human Practices
- Selecting a main project
June
General Activities
- Regular team meeting
- Looking for sponsors
- Collaborating with Purdue iGEM team
- Planning month activities
Wetlab
- General construct design
Drylab
- Continuing the stochastic simulations for the analysis of the decoy sites
Human Practices
- Defining the structure of the fact checker project
General Activities
- Regular team meeting
- Looking for sponsors
Wetlab
- Protein design
Drylab
- Continuing the stochastic simulations for the analysis of the decoy sites
Human Practices
- Redacting the preliminary description and survey for collaborators of the fact checker project
General Activities
- Regular team meeting
- Looking for sponsors
Wetlab
- Final design of the constructs
Drylab
- Continuing the stochastic simulations for the analysis of the decoy sites
Human Practices
- Revising the preliminary description and survey for collaborators of the fact checker project
General Activities
- Regular team meeting
- Looking for sponsors
Wetlab
- Ordering the constructs
- Working on the protocols
Drylab
- Analyzing the results from the stochastic simulations for the analysis of the decoy sites
Human Practices
- Researching for facts and myths related to Synthetic Biology to be checked
July
General Activities
- Regular team meeting
- Looking for sponsors
- Planning month activities
Wetlab
- Finalizing the protocols
- Planning lab schedule
Drylab
- Starting the ODE model for the analysis of the FNR promoter
Human Practices
- Researching for facts and myths related to Synthetic Biology to be checked
General Activities
- Regular team meeting
- Looking for sponsors
- Collaborating with Purdue iGEM team
Drylab
- Continuing the ODE model for the analysis of the FNR promoter
Human Practices
- Researching for facts and myths related to Synthetic Biology to be checked
General Activities
- Regular team meetings
- Looking for sponsors
- Collaborating with Purdue iGEM team
Wetlab
- Creating agar plates
- Transforming DNA
- Plating bacteria
- Making LB medium
- Creating small cultures
- DNA retention from cultures
- Nano-drop tests
Drylab
- Analyzing the results from the ODE model for the analysis of the FNR promoter
Human Practices
- Researching for facts and myths related to Synthetic Biology to be checked
- Sending the survey to collaborators
General Activities
- Regular team meetings
- Looking for sponsors
Wetlab
- Creating agar plates
- Transforming DNA
- Plating bacteria
- Making LB medium
- Creating small cultures
- DNA retention from cultures
- Nano-drop tests
Drylab
- Merging the stochastic simulations model for the decoy sites with the ODE model for the FNR promoter
Human Practices
- Researching for facts and myths related to Synthetic Biology to be checked
August
- ...
- ...
- ...
- ...
- ...
September
- ...
- ...
- ...
- ...