Team:UC Davis/Data

From 2013.igem.org

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       </ul>
       </ul>
</div>
</div>
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<div class="floatboxwide">
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<h1 id="widget">KO3D test</h1>
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<div id="mutantwidget" class="floatbox">
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<h3>Wild-type</h3>
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<span class="sequence">caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca</span>
 +
<span class="xdata">0, .0014, .0028, .0042, .0056, .0070, .0140</span>
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<span class="ydata">0.99353, 0.78661, 0.61233, 0.48347, 0.40302, 0.31833, 0.17311</span>
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<span class="stdevs">0.0031579, 0.0052541, 0.0059555, 0.0069092, 0.0041919, 0.0052347, 0.0024241</span>
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<span class="numconditions">4</span>
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<span class='xdata_3d'>0, 1, 2.5, 5</span>
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<span class='ydata_3d'>0.00000,  0.0014,  0.0028,  0.0042,  0.0056,  .0070,  .0140</span>
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<span class='zdata_3d'>
 +
  0.99353,  1.02920,  1.05770,  1.12136,
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  0.78661,  1.00142,  1.02352,  1.06377,
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  0.61233,  0.90829,  0.95385,  1.06676,
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  0.48347,  0.77363,  0.85365,  0.99591,
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  0.40302,  0.67853,  0.74660,  0.93119,
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  0.31833,  0.56058,  0.62386,  0.83851,
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  0.17311,  0.33178,  0.40330,  0.58631</span>
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<span class='stdevs_3d'>
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  0.0031579,  0.0078785,  0.0087252,  0.0491108,
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  0.0052541,  0.0065114,  0.0028587,  0.0289843,
 +
  0.0059555,  0.0047101,  0.0029583,  0.0241440,
 +
  0.0069092,  0.0036622,  0.0052977,  0.0270465,
 +
  0.0041919,  0.0042828,  0.0210219,  0.0054843,
 +
  0.0052347,  0.0067734,  0.0282990,  0.0027105,
 +
  0.0024241,  0.0038951,  0.0043371,  0.0029370</span>
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<h3>Mutant 1</h3>
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<span class="sequence">caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca</span>
 +
<span class="xdata">0, .0014, .0028, .0042, .0056, .0070, .0140</span>
 +
<span class="ydata">0.84293, 0.52501, 0.28185, 0.14559, 0.082367, 0.05077, 0.017707</span>
 +
<span class="stdevs">.017132, .016563, .010138, .0083723, .0036696, .0013295, .00029933</span>
 +
<span class='xdata_3d'>0, 1, 2.5, 5</span>
 +
<span class='ydata_3d'>0.00000,  0.0014,  0.0028,  0.0042,  0.0056,  .0070,  .0140</span>
 +
<span class='zdata_3d'>
 +
  0.84293,  0.87306,    0.88569,  0.88705,
 +
  0.52501,  0.73231,  0.85955,  0.86384,
 +
  0.28185,  0.49594,  0.754,  0.85027,
 +
  0.14559,  0.30866,  0.53435,  0.79143,
 +
  0.082367,  0.20109,  0.38603,  0.6632,
 +
  0.05077,  0.13482,  0.28296,  0.59708,
 +
  0.017707,  0.062278,  0.080463,  0.22066</span>
 +
<span class='stdevs_3d'>
 +
  0.017132,    0.017727,    0.020661,    0.014524,
 +
  0.016563,  0.0095391,    0.013332,    0.024361,
 +
  0.010138,    0.017069,    0.017257,    0.019877,
 +
  0.0083723,  0.0064858,    0.006745,    0.035387,
 +
  0.0036696,  0.0024604,    0.014455,    0.017886,
 +
  0.0013295,  0.0017976,  0.0039159,    0.011506,
 +
  0.00029933,  0.0014914,  0.00096534,  0.0054255</span>
 +
</div>
 +
<div class="floatbox">
<div class="floatbox">

Revision as of 00:45, 24 September 2013

Data Links

  • item 1
  • item 2

KO3D test

Wild-type

caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca 0, .0014, .0028, .0042, .0056, .0070, .0140 0.99353, 0.78661, 0.61233, 0.48347, 0.40302, 0.31833, 0.17311 0.0031579, 0.0052541, 0.0059555, 0.0069092, 0.0041919, 0.0052347, 0.0024241 4 0, 1, 2.5, 5 0.00000, 0.0014, 0.0028, 0.0042, 0.0056, .0070, .0140 0.99353, 1.02920, 1.05770, 1.12136, 0.78661, 1.00142, 1.02352, 1.06377, 0.61233, 0.90829, 0.95385, 1.06676, 0.48347, 0.77363, 0.85365, 0.99591, 0.40302, 0.67853, 0.74660, 0.93119, 0.31833, 0.56058, 0.62386, 0.83851, 0.17311, 0.33178, 0.40330, 0.58631 0.0031579, 0.0078785, 0.0087252, 0.0491108, 0.0052541, 0.0065114, 0.0028587, 0.0289843, 0.0059555, 0.0047101, 0.0029583, 0.0241440, 0.0069092, 0.0036622, 0.0052977, 0.0270465, 0.0041919, 0.0042828, 0.0210219, 0.0054843, 0.0052347, 0.0067734, 0.0282990, 0.0027105, 0.0024241, 0.0038951, 0.0043371, 0.0029370

Mutant 1

caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca 0, .0014, .0028, .0042, .0056, .0070, .0140 0.84293, 0.52501, 0.28185, 0.14559, 0.082367, 0.05077, 0.017707 .017132, .016563, .010138, .0083723, .0036696, .0013295, .00029933 0, 1, 2.5, 5 0.00000, 0.0014, 0.0028, 0.0042, 0.0056, .0070, .0140 0.84293, 0.87306, 0.88569, 0.88705, 0.52501, 0.73231, 0.85955, 0.86384, 0.28185, 0.49594, 0.754, 0.85027, 0.14559, 0.30866, 0.53435, 0.79143, 0.082367, 0.20109, 0.38603, 0.6632, 0.05077, 0.13482, 0.28296, 0.59708, 0.017707, 0.062278, 0.080463, 0.22066 0.017132, 0.017727, 0.020661, 0.014524, 0.016563, 0.0095391, 0.013332, 0.024361, 0.010138, 0.017069, 0.017257, 0.019877, 0.0083723, 0.0064858, 0.006745, 0.035387, 0.0036696, 0.0024604, 0.014455, 0.017886, 0.0013295, 0.0017976, 0.0039159, 0.011506, 0.00029933, 0.0014914, 0.00096534, 0.0054255

Project Background

Learn about how we combine riboswitches and TAL's into robust orthogonal mechanisms for inducible repression.

Results

Check out the results of our experiments.

Human Practices

Take a look at how we designed a new database for better raw data characterization of Biobricks.

Judging Criteria

Here's the criteria that we met for this year's team.

Retrieved from "http://2013.igem.org/Team:UC_Davis/Data"