Team:UC Davis/Data

From 2013.igem.org

(Difference between revisions)
Line 23: Line 23:
<h1 id="widget">KO3D test</h1>
<h1 id="widget">KO3D test</h1>
<div id="mutantwidget" class="floatbox">
<div id="mutantwidget" class="floatbox">
-
<h3>Wild-type</h3>
+
<h3>0 ng/mL aTc</h3>
<span class="sequence">caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca</span>
<span class="sequence">caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca</span>
-
<span class="xdata">0, .0014, .0028, .0042, .0056, .0070, .0140</span>
+
<span class="xdata">0, 1, 2, 5, 10</span>
-
<span class="ydata">0.99353, 0.78661, 0.61233, 0.48347, 0.40302, 0.31833, 0.17311</span>
+
<span class="ydata">599, 647, 690, 684, 494</span>
<span class="stdevs">0.0031579, 0.0052541, 0.0059555, 0.0069092, 0.0041919, 0.0052347, 0.0024241</span>
<span class="stdevs">0.0031579, 0.0052541, 0.0059555, 0.0069092, 0.0041919, 0.0052347, 0.0024241</span>
<span class="numconditions">4</span>
<span class="numconditions">4</span>
<span class='xdata_3d'>0, 1, 2.5, 5</span>
<span class='xdata_3d'>0, 1, 2.5, 5</span>
-
<span class='ydata_3d'>0.00000,  0.0014,  0.0028,  0.0042,  0.0056,  .0070,  .0140</span>
+
<span class='ydata_3d'>0.00000,  0.0014,  0.0028,  0.0042,  0.0056,  .0070,  .014</span>
<span class='zdata_3d'>
<span class='zdata_3d'>
   0.99353,  1.02920,  1.05770,  1.12136,
   0.99353,  1.02920,  1.05770,  1.12136,
Line 48: Line 48:
   0.0024241,  0.0038951,  0.0043371,  0.0029370</span>
   0.0024241,  0.0038951,  0.0043371,  0.0029370</span>
    
    
-
<h3>Mutant 1</h3>
+
<h3>100 ng/mL aTc</h3>
<span class="sequence">caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca</span>
<span class="sequence">caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca</span>
-
<span class="xdata">0, .0014, .0028, .0042, .0056, .0070, .0140</span>
+
<span class="xdata">0, 1, 2, 5, 10</span>
-
<span class="ydata">0.84293, 0.52501, 0.28185, 0.14559, 0.082367, 0.05077, 0.017707</span>
+
<span class="ydata">19281, 14779, 18481, 16665, 7100</span>
<span class="stdevs">.017132, .016563, .010138, .0083723, .0036696, .0013295, .00029933</span>
<span class="stdevs">.017132, .016563, .010138, .0083723, .0036696, .0013295, .00029933</span>
<span class='xdata_3d'>0, 1, 2.5, 5</span>
<span class='xdata_3d'>0, 1, 2.5, 5</span>

Revision as of 01:39, 24 September 2013

Data Links

  • item 1
  • item 2

KO3D test

0 ng/mL aTc

caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca 0, 1, 2, 5, 10 599, 647, 690, 684, 494 0.0031579, 0.0052541, 0.0059555, 0.0069092, 0.0041919, 0.0052347, 0.0024241 4 0, 1, 2.5, 5 0.00000, 0.0014, 0.0028, 0.0042, 0.0056, .0070, .014 0.99353, 1.02920, 1.05770, 1.12136, 0.78661, 1.00142, 1.02352, 1.06377, 0.61233, 0.90829, 0.95385, 1.06676, 0.48347, 0.77363, 0.85365, 0.99591, 0.40302, 0.67853, 0.74660, 0.93119, 0.31833, 0.56058, 0.62386, 0.83851, 0.17311, 0.33178, 0.40330, 0.58631 0.0031579, 0.0078785, 0.0087252, 0.0491108, 0.0052541, 0.0065114, 0.0028587, 0.0289843, 0.0059555, 0.0047101, 0.0029583, 0.0241440, 0.0069092, 0.0036622, 0.0052977, 0.0270465, 0.0041919, 0.0042828, 0.0210219, 0.0054843, 0.0052347, 0.0067734, 0.0282990, 0.0027105, 0.0024241, 0.0038951, 0.0043371, 0.0029370

100 ng/mL aTc

caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca 0, 1, 2, 5, 10 19281, 14779, 18481, 16665, 7100 .017132, .016563, .010138, .0083723, .0036696, .0013295, .00029933 0, 1, 2.5, 5 0.00000, 0.0014, 0.0028, 0.0042, 0.0056, .0070, .0140 0.84293, 0.87306, 0.88569, 0.88705, 0.52501, 0.73231, 0.85955, 0.86384, 0.28185, 0.49594, 0.754, 0.85027, 0.14559, 0.30866, 0.53435, 0.79143, 0.082367, 0.20109, 0.38603, 0.6632, 0.05077, 0.13482, 0.28296, 0.59708, 0.017707, 0.062278, 0.080463, 0.22066 0.017132, 0.017727, 0.020661, 0.014524, 0.016563, 0.0095391, 0.013332, 0.024361, 0.010138, 0.017069, 0.017257, 0.019877, 0.0083723, 0.0064858, 0.006745, 0.035387, 0.0036696, 0.0024604, 0.014455, 0.017886, 0.0013295, 0.0017976, 0.0039159, 0.011506, 0.00029933, 0.0014914, 0.00096534, 0.0054255

Project Background

Learn about how we combine riboswitches and TAL's into robust orthogonal mechanisms for inducible repression.

Results

Check out the results of our experiments.

Human Practices

Take a look at how we designed a new database for better raw data characterization of Biobricks.

Judging Criteria

Here's the criteria that we met for this year's team.

Retrieved from "http://2013.igem.org/Team:UC_Davis/Data"