Team:UC Davis/Database

From 2013.igem.org

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In addition to empowering iGEM-ers, a uploading data to a standardized characterization database promotes openness. In other biological applicatoins, such as <a href=http://www.ncbi.nlm.nih.gov/genbank/>genomic sequencing</a> and <a href="http://www.pdb.org/pdb/home/home.do">protein structuring</a>, open data is the norm, and for strong reasons; open data allows communities to validate successes and understand failures, while supporting future researchers downstream. For these reasons, iGEM is founded upon an open community. Open data through the BBCDD is another way for iGEM-ers to contribute to an open community.   
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In addition to empowering iGEM-ers, a uploading data to a standardized characterization database promotes openness. In other biological applicatoins, such as <a href=http://www.ncbi.nlm.nih.gov/genbank/>genomic sequencing</a> and <a href="http://www.pdb.org/pdb/home/home.do">protein structuring</a>, open data is the norm for strong reasons; open data allows communities to validate successes and understand failures, while supporting future researchers downstream. For these reasons, iGEM is founded upon an open community. Open data through the BBCDD is another way for iGEM-ers to contribute to an open community.   
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Revision as of 19:05, 25 September 2013

The BioBrick Characterization Data Depot (BBCDD) is a semi-standardized database designed for iGEM teams to upload their characterization to. Originally intended to share the multivariate characterization data of riboTALs, the BBCDD was repurposed for sharing data of all part types to promote openness within iGEM and synthetic biology.

Motivation: Empowerment and Openness

The from the iGEM DNA distribution kit and registry, to the eagerness of faculty and universities across the globe, the iGEM competition empowers students to make a brilliant idea into a tangible, presentable project. This fact is made clear depth by the number and depth of projects in past years.

However, as BioBrick circuits become more complex, their design process can be dramatically slowed by the large number of relationships and dependencies between their individual parts. Empowering iGEM-ers with an standardized, accessible database for the characterization of BioBrick parts is the clear solution to address problems in high complexity circuits.[1].

In addition to empowering iGEM-ers, a uploading data to a standardized characterization database promotes openness. In other biological applicatoins, such as genomic sequencing and protein structuring, open data is the norm for strong reasons; open data allows communities to validate successes and understand failures, while supporting future researchers downstream. For these reasons, iGEM is founded upon an open community. Open data through the BBCDD is another way for iGEM-ers to contribute to an open community.

Visit the BBCDD

Example Upload

Walk through an example upload to the BBCDD.

Example Search

Walk through an example search through BBCDD.

Data Standards

See the BBCDD's standards on three parts, and how you can contribute to making more standards.

References

[1] M Galdzicki, D Chandran, JH Gennari, HM Sauro, "Design and Analysis of Bio-molecular Circuits", pp. 281, 2011