Team:TU-Delft/Project

From 2013.igem.org

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<p align="justify">Methicillin-Resistant Staphylococcus Aureus is a bacterium responsible for several difficult-to-treat infections in humans. MRSA can be any strain of Staphylococcus aureus that has developed, through the process of natural selection, resistance to beta-lactam antibiotics. MRSA is especially troublesome in hospitals, prisons and nursing homes, where patients with open wounds, invasive devices, and weakened immune systems are at greater risk of infection than the general public. The Centers for Disease Control and Prevention estimated that about 1.7 million infections occurred in the United States in 2002. More than 30% MRSA cases of total number of Staphyllococcus infections are in Europe. </p>
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<p align="justify">Methicillin-Resistant Staphylococcus aureus is causing major problems in hospitals and nursing homes. It causes infections, over 0.5 million in 2002 [1] in the United States and puts patients with open wounds and weakened immune systems at great risks. It is so problematic because it is very difficult to treat; these bacteria have developed resistance against most antibiotics available. Several newly discovered strains of MRSA show antibiotic resistance even to vancomycin and teicoplanin, which are now the one of the last antibiotics useful against MRSA. Although a lot of research is done on alternative treatments, not much success has been booked yet. One of the more promising methods though, seems to be by the use of antimicrobial peptides. </p>
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<p align="justify" margin: 20px >Several newly discovered strains of MRSA show antibiotic resistance even to vancomycin and teicoplanin. These new evolutions of the MRSA bacterium are called Vancomycin intermediate-resistant Staphylococcus aureus (VISA). There have been claims that bacteriophage can be used to cure MRSA.  
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<p align="justify" margin: 20px >Therefore, our project focusses on designing an E. coli that can detect MRSA in order to locally produce and deliver antimicrobial peptides against gram-positive bacteria. Our E. coli will detect S. aureus by its own quorum sensing system, and at that moment inactivated antimicrobial peptide are started to be produced. With the use of a timer the peptide will be activated by cleavage of an inactivating tag. With the use of a timer, high concentrations of peptide can be delivered very locally in order to efficiently kill MRSA. In order to ensure the safety of the system, the peptide-activating protease is combined with a kill switch that will kill our E. coli.  
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<p align="justify">For that reason we decided to use a different approach to deal with this MRSA problem.More specifically, the project would focus on killing the Staphylococcus species by antimicrobial peptides synthesized in an E.coli model organism.   </p>
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<p align="justify">This project is novel because we aim to fight a life threatening, hard to cure disease by incorporating and combining components of multiple kingdoms into one organism. We let a gram-negative bacterium sense the communication molecules of gram-positive bacteria and respond to this with an animal innate immune response. The protease activation of the antimicrobial peptide is from fungal origin. </p>
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<p align="justify">However, we will not only focus on a new type of antibiotic molecule (the peptides) but also on a smart way to deliver them. In particular, our project consists of three main phases:</p>
 
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<p align="center"><b>Sense - Produce - Kill</b></br>
 
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<p align="justify">At the beginning, E.Coli detects S. Aureus through a quorum sensing mechanism. Afterwards a timer is activated and the peptide is produced . The existence of the timer is related to efficient delivery of high peptide concentration. By the end of the production, the produced peptide kills S.Aureus. The final step is the activation of a kill switch in order E.Coli to be killed.  In that way, we  ensure the safety of our system.
 
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The Novel idea of this project is Antimicrobial peptides (also called host defense peptides) which are an evolutionarily conserved component of the innate immune response and are found among all classes of life. They have been demonstrated to kill Gram negative and Gram positive bacteria</p>
 
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Revision as of 08:07, 26 July 2013


Methicillin-Resistant Staphylococcus aureus is causing major problems in hospitals and nursing homes. It causes infections, over 0.5 million in 2002 [1] in the United States and puts patients with open wounds and weakened immune systems at great risks. It is so problematic because it is very difficult to treat; these bacteria have developed resistance against most antibiotics available. Several newly discovered strains of MRSA show antibiotic resistance even to vancomycin and teicoplanin, which are now the one of the last antibiotics useful against MRSA. Although a lot of research is done on alternative treatments, not much success has been booked yet. One of the more promising methods though, seems to be by the use of antimicrobial peptides.

Therefore, our project focusses on designing an E. coli that can detect MRSA in order to locally produce and deliver antimicrobial peptides against gram-positive bacteria. Our E. coli will detect S. aureus by its own quorum sensing system, and at that moment inactivated antimicrobial peptide are started to be produced. With the use of a timer the peptide will be activated by cleavage of an inactivating tag. With the use of a timer, high concentrations of peptide can be delivered very locally in order to efficiently kill MRSA. In order to ensure the safety of the system, the peptide-activating protease is combined with a kill switch that will kill our E. coli.

This project is novel because we aim to fight a life threatening, hard to cure disease by incorporating and combining components of multiple kingdoms into one organism. We let a gram-negative bacterium sense the communication molecules of gram-positive bacteria and respond to this with an animal innate immune response. The protease activation of the antimicrobial peptide is from fungal origin.