Team:Evry/Modeltr1

From 2013.igem.org

Revision as of 09:43, 26 October 2013 by Hippo (Talk | contribs)

Iron coli project

Disease model

Introduction

In the very beginning of the project, we focused on the duodenum and the iron absorbed by it. In order to determine if a flush treatment strategy was viable, we first had to model the behaviour of the duodenum regarding iron absorption.

Observations

60% of iron absorption takes place in the duodenum, the last 40% in the jejunum. The duodenum is located at the upper intestines, right after the stomach, and is usually 300mm long.

Absorption
Figure 1 : Overview of the iron regulation system in human body.

A healthy person absorbs about 10% (2mg a day) of the daily iron uptake, while a hemochromatosis person's absorption varies between 50% and 100% of the daily iron uptake[1].

Goals

Our goal in this part of the model is to create a generic duodenal iron absorption model so that:

Assumptions

  • Our bacteria don't settle in the duodenum
  • No regulation in the patient's iron absorption
  • Constant iron flow
  • Homogeneous fluid
  • The bacterial quantity is constant
  • The bacterial natural absorption is insignificant compared to the chelation
  • The patient ingests 20mg of iron per day (Guideline Daily Amounts)

Materials and methods

The duodenum is considered as a cylinder in which a homogeneous fluid flows. So, this model is divided into three steps: the filling of duodenum, the steady state flowing step and the emptying.
This model has two variables : the iron disolved in the middle (S) and the absorbed iron (A).
We considered a constant iron pulse every second arrive in the duodenum. S has a linear component Sp which represents the pulses. We also have the emptying component and the absorption component. We assume a linear absorption and a negative feedback regulation for A. Finally :

α s-1 Duodenum absorption rate
v m/s Chyme's flow average speed
L m Duodenum length
Sp mol/s Iron pulse
Parameters fixing :
We have

Results

Absorption
Figure 2 : Iron in the middle and absorbed in the duodenum of a Healthy person.

Absorption
Figure 3 : Iron in the middle and absorbed in the duodenum of a sick person.

Conclusion

Models and scripts

References:

  1. Physiol Rev 93: 1721–1741, 2013 doi:10.1152/physrev.00008.2013 - Tomas Ganz "SYSTEMIC IRON HOMEOSTASIS"