Team:UC Davis/Database
From 2013.igem.org
Motivation: Empowerment and Openness
The from the iGEM DNA distribution kit and registry, to the eagerness of faculty and universities across the globe, the iGEM competition empowers students to make a brilliant idea into a tangible, presentable project. This fact is made clear depth by the number and depth of projects in past years.
However, as BioBrick circuits become more complex, their design process can be dramatically slowed by the large number of relationships and dependencies between their individual parts. Empowering iGEM-ers with an standardized, accessible database for the characterization of BioBrick parts is the clear solution to address problems in high complexity circuits.[1].
In addition to empowering iGEM-ers, a uploading data to a standardized characterization database promotes openness. In other biological applications, such as genomic sequencing and protein structuring, open data is the norm for strong reasons; open data allows communities to validate successes and understand failures, while supporting future researchers downstream. For these reasons, iGEM is founded upon an open community. Open data through the BBCDD is another way for iGEM-ers to contribute to an open community.
Approaches: Past, and the BBCDD
Motivation: Empowerment and Openness
Visit the BBCDD |
Example UploadWalk through an example upload to the BBCDD. |
Example SearchWalk through an example search through BBCDD. |
Data StandardsSee the BBCDD's standards on three parts, and how you can contribute to making more standards. |
References
[1] M Galdzicki, D Chandran, JH Gennari, HM Sauro, "Design and Analysis of Bio-molecular Circuits", pp. 281, 2011