Team:Evry/Modeltr1
From 2013.igem.org
Disease model
Introduction
In the very beginning of the project, we focused on the duodenum and the iron absorbed by it. In order to determine if a flush treatment strategy was viable, we first had to model the behaviour of the duodenum regarding iron absorption.
Observations
60% of iron absorption takes place in the duodenum, the last 40% in the jejunum. The duodenum is located at the upper intestines, right after the stomach, and is usually 300mm long.
A healthy person absorbs about 10% of the daily iron uptake(2 mg), while a hemochromatosis person's absorption varies between 50% and 100% of the daily iron uptake[1].
Goals
This model is the first step for a sick person with treatment model . So, we want to have a realistic base for the final model.
Assumptions
- Our bacteria don't settle in the duodenum
- No regulation in the patient's iron absorption
- Constant iron flow
- Homogeneous fluid
- The bacterial quantity is constant
- The bacterial natural absorption is insignificant compared to the chelation
- The patient ingests 20mg of iron per day (Guideline Daily Amounts)
Materials and methods
The duodenum is a cylindrique pipe throw by a homogeneous fluid. So, we three step in the model: the filling of duodenum, steady state step and the emptying.
This model have two state variable : iron disolved in the middle (S) and iron absorbed (A).
We considere a constant iron pulse every second arrive in the duodenum. S have a linear composant Sp who represent the pulses. We have the emptying compopsant and finally the absorption composant.
We assume a linear absorption and a negative feedback regulation for A.
Finally :
α | s-1 | Duodenum absorption rate |
v | m/s | Chyme's flow average speed |
L | m | Duodenum length |
Sp | mol/s | Iron pulse |
We have
Results
Conclusion
Models and scripts