Team:Paris Saclay/Notebook/July/15

From 2013.igem.org

(Difference between revisions)
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==='''A - Aerobic/Anaerobic regulation system'''===
==='''A - Aerobic/Anaerobic regulation system'''===
-
===='''Objective : obtaining Bba_K1155003, Bba_K1155007'''====
+
===='''Objective : obtaining Bba_K1155000'''====
-
===='''1 - Transformation of Bba_I732019 and Bba_B0010 in DH5α'''====
+
===='''1 - Sequensis analysis of Bba_K1155000 ''====
 +
 
 +
Abdou
 +
 
 +
WE OUR FIRST BIOBRICK !
 +
The sequence analysis was good. We call our biobrick Bba_K1155000.
 +
 
 +
===='''Objective : obtaining Bba_K1155003, bba_K1155007'''====
 +
 
 +
===='''1 - Liquid culture of Bba_B0010, Bba_B0015, Bba_B0017, Bba_I732019 ''====
 +
 
 +
Sheng, Zhou
 +
 
 +
{|
 +
| style="border:1px solid black;padding:5px;background-color:#DE;" |
 +
Tranformations of 07/12/13 works. We will do a liquid culture of them.
 +
|}
 +
 
 +
We used 5 colonies of each plasmid.
 +
 
 +
===='''2 - Digestion of Bba_B0010 by EcoRI/PstI ''====
 +
 
 +
Anaïs
 +
 
 +
Used quantities :
 +
* DNA : 20µL
 +
* Buffer FD : 3µL
 +
* EcoRI : 1µL
 +
* PstI : 1µL
 +
* H2O : 5µL
 +
 
 +
We let our digestion 1h30 at 37°C.
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We let the digestion 1h30 at 37°C.
We let the digestion 1h30 at 37°C.
-
===='''2 - Denaturation of EcoRI/PstI and SacII used for the digestion of Bba_K11001, Bba_K1155002 and BphR2 in PSB1C3'''====
 
-
 
-
Abdou
 
-
 
-
Protocol : [[Team:Paris_Saclay/Protocols/Ethanol precipitation|Ethanol precipitation]]
 
-
 
-
We used 15µL of DNA.
 
===='''3 - PCR of digestion of Bba_K11001, Bba_K1155002 and BphR2 in PSB1C3'''====
===='''3 - PCR of digestion of Bba_K11001, Bba_K1155002 and BphR2 in PSB1C3'''====
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Used quantities :  
Used quantities :  
 +
.....
 +
 +
COLONIES PIQUEES DANS 20µL d'eau pour chaque colonie.
 +
 +
Used quantities :
 +
* BphA1 or BphR1 or BphR2 : 2µL
 +
* Mix : (it was divided in 2 tubes for each oligo combinaison with 23µL of mix in each tube)
 +
** VF or Pfnr_Up : 6µL
 +
** VR or Pfnr_Down or VR : 6µL
 +
** dNTP : 6µL
 +
** Buffer Dream Taq : 30µL
 +
** Dream Taq : 6µL
 +
** H2O : 246µL
 +
....
....

Revision as of 15:05, 25 September 2013

Contents

Notebook : July 15

Lab work

A - Aerobic/Anaerobic regulation system

Objective : obtaining Bba_K1155000

'1 - Sequensis analysis of Bba_K1155000

Abdou

WE OUR FIRST BIOBRICK ! The sequence analysis was good. We call our biobrick Bba_K1155000.

Objective : obtaining Bba_K1155003, bba_K1155007

'1 - Liquid culture of Bba_B0010, Bba_B0015, Bba_B0017, Bba_I732019

Sheng, Zhou

Tranformations of 07/12/13 works. We will do a liquid culture of them.

We used 5 colonies of each plasmid.

'2 - Digestion of Bba_B0010 by EcoRI/PstI

Anaïs

Used quantities :

  • DNA : 20µL
  • Buffer FD : 3µL
  • EcoRI : 1µL
  • PstI : 1µL
  • H2O : 5µL

We let our digestion 1h30 at 37°C.


B - PCB sensor system

Objective : obtaining Bba_K1155001, Bba_K1155002, BphR2

1 - Digestion of Bba_K11001, Bba_K1155002 and BphR2 in PSB1C3 by EcoRI/PstI and SacII to check the size of fragments

Abdou

Used quantities :

  • EcoRI/PstI :
    • DNA : 8µL
    • Buffer Orange : 1.6µL
    • EcoRI : 1µL
    • PstI : 1µL
    • H2O : 4.4µL
  • SacII :
    • DNA : 8µL
    • Buffer Blue : 1.6µL
    • SacII : 1µL
    • H2O : 5.4µL

We let the digestion 1h30 at 37°C.


3 - PCR of digestion of Bba_K11001, Bba_K1155002 and BphR2 in PSB1C3

Anaïs, Sheng, Zhou

Used quantities : .....

COLONIES PIQUEES DANS 20µL d'eau pour chaque colonie.

Used quantities :

  • BphA1 or BphR1 or BphR2 : 2µL
  • Mix : (it was divided in 2 tubes for each oligo combinaison with 23µL of mix in each tube)
    • VF or Pfnr_Up : 6µL
    • VR or Pfnr_Down or VR : 6µL
    • dNTP : 6µL
    • Buffer Dream Taq : 30µL
    • Dream Taq : 6µL
    • H2O : 246µL


....

PCR Program :

  • BphR1 :

PsPCRR11507.jpg

  • BphA1, BphR2 :

PsPCRR2A11507.jpg

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