"
Team:Paris Saclay/Notebook/July/3
From 2013.igem.org
| Line 1: | Line 1: | ||
| - | |||
{| border="1" align="center" | {| border="1" align="center" | ||
|- | |- | ||
| Line 79: | Line 78: | ||
<p>VF2, VR, Pfnr_up, Pfnr_down are four oligos that we used for plasmid amplification. We used tree combinaisons VF/VR, VF/Pfnr_Down, Pfnr_Up/VR. | <p>VF2, VR, Pfnr_up, Pfnr_down are four oligos that we used for plasmid amplification. We used tree combinaisons VF/VR, VF/Pfnr_Down, Pfnr_Up/VR. | ||
If the promoter Pfnr insert PSB1C3 plasmid successfully, tree fragments with specific size will be amplified. </p><br> | If the promoter Pfnr insert PSB1C3 plasmid successfully, tree fragments with specific size will be amplified. </p><br> | ||
| - | <center>[[File:PSprimer07.jpg|300px]]</ | + | <center>[[File:PSprimer07.jpg|300px]]</right> |
<br> | <br> | ||
| - | {| border="1" align=" | + | {| border="1" align="center" |
|[[Team:Paris Saclay/Notebook/June/30|<big>Previous day</big>]] | |[[Team:Paris Saclay/Notebook/June/30|<big>Previous day</big>]] | ||
Revision as of 14:03, 22 September 2013
| colonies | Normal concentration | High concentration |
| control | ||
| Fnr in plasmid PSB1C3 |
We picked up 4 colonies for further test (2 include FNR+plasmid in PSB1C3 and 2 from the control)
Primer and PCR
VF2, VR, Pfnr_up, Pfnr_down are 4 primes that we used for plasmid restriction. The primers, if the promoter fnr entre the plasmid successfully will amplify 3 sub-pieces with specific size. They are VF/VR, VF/Pfnr_down, Pfnr_up/VR.
So we had prepared 4(colonies)*3(amplification) = 12 PCR tubes.
- Dream Taq(5µg/µl):2µl
- Buffer (Dream Taq) 10X:10µl
- dNTP:2µl
- Primer (F/R;F/fnr_R;fnr_F/R):2µl+2µl
- H2O:82µl
- Total:100µl (volume for 4 tubes, so 25µl for each)
PCR programe
The PCR products was put on a gel of agarose 1.5% with BET (1.5%), migrated during 30 min at 100V. the picture analysis was be delayed to the next day.
Culture confirmation
We performed another colonies seeding. 2 colonies selected from each Petri dish were seeded in liquid medium with their corresponding antibiotic at 37°C under stirring during 1 night.
Contents |
Notebook : July 1
Lab work
A - Aerobic/Anaerobic regulation system
Objective : obtaining Bba_K1155000
1 - Colony PCR of Bba_K1155000, Bba_I732017, Bba_K592009
Abdou, Sheng, Zhou
|
Tranformation of 07/02/13 works. We will do a Colony PCR of colonies. |
Colonies count :
- Standard concentration :
- Bba_K1155000 : 0
- High concentration :
- Bba_K1155000 : 2
Primer and PCR
VF2, VR, Pfnr_up, Pfnr_down are four oligos that we used for plasmid amplification. We used tree combinaisons VF/VR, VF/Pfnr_Down, Pfnr_Up/VR. If the promoter Pfnr insert PSB1C3 plasmid successfully, tree fragments with specific size will be amplified.
</right>
| Previous day | Back to calendar | Next day |
