Team:Paris Saclay/Open source

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(Open Source Reflection)
 
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Reflection on Open Source
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[[Team:Paris_Saclay/Open_source|Intro]]
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[[Team:Paris_Saclay/opensourcereflexion|Reflection]]
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[[Team:Paris_Saclay/ellen_interview|Interview]]
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='''Open Source Reflection'''=
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='''Reflection on the Open Source concept'''=
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As part of our reflection on our participation to the iGEM competition and on the future of synthetic biology, we decided to work on the open source concept and on its impact in our society. Our work was divided in three parts.
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As part of our reflection on our participation to the iGEM competition and on the future of synthetic biology, we decided to work on the Open Source concept and on its impact in our society. Our work was divided in three parts.
- Discussion about the open source concept during small meetings we organised
- Discussion about the open source concept during small meetings we organised
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- Interview of Ellen Jorgensen (co-founder and president of Genspace) about her views regarding open source in biology
- Interview of Ellen Jorgensen (co-founder and president of Genspace) about her views regarding open source in biology
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- Development of a new open source PCR thermal cycle project.
- Development of a new open source PCR thermal cycle project.
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- First part : [[Team:Paris_Saclay/opensourcereflexion|OPEN SOURCE REFLECTION]].
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=='''Reflections on the Open Source concept'''==
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  [[File:Psopensource4.jpg|left|300px|caption]]
  [[File:Psopensource4.jpg|left|300px|caption]]
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We organized meetings in which two or three of us presented an aspect of the open source (what is open source, what is the place of the open source synbio in our economy, what comparison we can do between informatic and synbiology, what are the risks of biohacking...). After each presentation we debated, and we hightlighted the important questions we wanted to broach.  
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We organized meetings in which two or three of us presented a specific aspect of Open Source: what is open source, what is the place of the open source synbio in our economy, what comparison we can make between computer science and synbiology, what are the risks of biohacking.... After each presentation we debated, and we hightlighted the important questions we wanted to broach. A report on the different meetings we had is available here: .
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<div style="text-align:center;"><span style="font-size:1.5em;border:1px solid #000000;padding:3px;">[[Team:Paris_Saclay/opensourcereflexion|OPEN SOURCE REFLECTION]]</span></div>
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<u>'''Our conclusion'''</u>
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During our meetings, We learned and discussed about the definition of Open Source in computer science, of its history. We tried to make a comparison between open source in computer science and in synthetic biology. We debated about the advantages and disadvantages of this type of system. We learnt a lot about the historic biologic attacks and about the global democratization of science. According to us, the application of the open source in biology is not for today. The model where firms protect their discoveries/inventions with patents, is still predominant. But it is certain that a new movement is being born, students and non scientific people have more and more access to information thanks to the internet. We can not deny the power of the democratization of science.
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This reflection prepared us to the interview of Ellen Jorgensen.
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=='''Interview of Ellen Jorgensen'''==
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- Second part : [[Team:Paris_Saclay/ellen_interview|OPEN SOURCE INTERVIEW]].
 
[[File:Psellen.jpg|right|150px|caption]]
[[File:Psellen.jpg|right|150px|caption]]
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We organized an interview with Ellen Jorgensen (the co-founder and president of Genspace a nonprofit organization dedicated to promoting citizen science and access to biotechnology) about the Open Source.
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To further enrich our reflection on Open Source, we decided to interview Ellen Jorgensen about her views on Open Source in Biology. Ellen Jorgensen is the co-founder and president of Genspace (http://genspace.org/), a nonprofit organization dedicated to promoting citizen science and access to biotechnology.
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<div style="text-align:center;"><span style="font-size:1.5em;border:1px solid #000000;padding:3px;">[[Team:Paris_Saclay/ellen_interview|OPEN SOURCE INTERVIEW]]</span></div>
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<u>'''Our conclusion'''</u>
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Thanks to this interview, we learned more about genspace and about the motivation of people who participate to this movment. People from a large diversity of backgrounds can experiment, can learn more about synBio, and design innovative projects. Experiments are controlled and secured. This is an important difference in comparison with biohakers working in their garage. We think that this reglementation shows a mature reflection about the open source in synthetic biology : everyone can make it, but security is the most important thing. After the interview we discussed about the question of DNA property : what are the consequences of putting personal DNA on the internet, can we modify every DNA or can we talk about DNA property (can DNA or its sequence belong to someone or a company)?
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We would like to thanks Ellen for answering to our questions. It was a great moment.
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=='''Our Open Source thermal cycler project'''==
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Our team decided to participate to the development of open source biology by designing an Open Source thermal cycler, the PS-PCR. We have created a PCR thermal cycler, trying to keep its price as low as possible (about 30€,i.e. $40) and therefore using salvaged materials and common tools. The PS-PCR is the good example of the positive consequences of the development of Open Source in synthetic biology : everyone can make it, improve it and share it. The goal of this project was to share with other iGEM teams the PS-PCR and to use it like a basic tool that could be improved.
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Some parts of this project were carried out at the Electrolab in Nanterre (near Paris)
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[[File:Pspcr.jpg|center|300px|caption]]
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<div style="text-align:center;"><span style="font-size:1.5em;border:1px solid #000000;padding:3px;">[[Team:Paris_Saclay/PS-PCR|OUR OPEN SOURCE PCR : PS-PCR]]</span></div>
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- Third part : [[Team:Paris_Saclay/PSPCR|OPEN SOURCE PCR]]
 
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Our team decided to develop an open source approach that each team could use, share and improve : the "Damir's PCR". We have create a PCR thermal cycle project, with 30 euros ( = XX dollars) and common tools. The Damir's PCR is the best example of the consequences of the Open Source in synthetic biology : everyone can make it and share it. The goal of this novel approach is to share with other teams the Damir's PCR and use it like a basic tool that can be improved.
 
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[[File:Pspcr.jpg|center|300px|caption]]
 
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'''Photos of our meetings and of the human practice team:'''
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Photos of our meetings and of the human practice team:
 
<gallery>
<gallery>
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Writing by Caroline and Damir
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Written by Caroline and Damir
{{Team:Paris_Saclay/incl_fin}}
{{Team:Paris_Saclay/incl_fin}}

Latest revision as of 16:29, 4 October 2013

Contents

Reflection on the Open Source concept

As part of our reflection on our participation to the iGEM competition and on the future of synthetic biology, we decided to work on the Open Source concept and on its impact in our society. Our work was divided in three parts.

- Discussion about the open source concept during small meetings we organised

- Interview of Ellen Jorgensen (co-founder and president of Genspace) about her views regarding open source in biology

- Development of a new open source PCR thermal cycle project.


Reflections on the Open Source concept

caption



We organized meetings in which two or three of us presented a specific aspect of Open Source: what is open source, what is the place of the open source synbio in our economy, what comparison we can make between computer science and synbiology, what are the risks of biohacking.... After each presentation we debated, and we hightlighted the important questions we wanted to broach. A report on the different meetings we had is available here: .


OPEN SOURCE REFLECTION



Our conclusion

During our meetings, We learned and discussed about the definition of Open Source in computer science, of its history. We tried to make a comparison between open source in computer science and in synthetic biology. We debated about the advantages and disadvantages of this type of system. We learnt a lot about the historic biologic attacks and about the global democratization of science. According to us, the application of the open source in biology is not for today. The model where firms protect their discoveries/inventions with patents, is still predominant. But it is certain that a new movement is being born, students and non scientific people have more and more access to information thanks to the internet. We can not deny the power of the democratization of science.

This reflection prepared us to the interview of Ellen Jorgensen.

Interview of Ellen Jorgensen

caption


To further enrich our reflection on Open Source, we decided to interview Ellen Jorgensen about her views on Open Source in Biology. Ellen Jorgensen is the co-founder and president of Genspace (http://genspace.org/), a nonprofit organization dedicated to promoting citizen science and access to biotechnology.


OPEN SOURCE INTERVIEW



Our conclusion

Thanks to this interview, we learned more about genspace and about the motivation of people who participate to this movment. People from a large diversity of backgrounds can experiment, can learn more about synBio, and design innovative projects. Experiments are controlled and secured. This is an important difference in comparison with biohakers working in their garage. We think that this reglementation shows a mature reflection about the open source in synthetic biology : everyone can make it, but security is the most important thing. After the interview we discussed about the question of DNA property : what are the consequences of putting personal DNA on the internet, can we modify every DNA or can we talk about DNA property (can DNA or its sequence belong to someone or a company)?

We would like to thanks Ellen for answering to our questions. It was a great moment.

Our Open Source thermal cycler project

Our team decided to participate to the development of open source biology by designing an Open Source thermal cycler, the PS-PCR. We have created a PCR thermal cycler, trying to keep its price as low as possible (about 30€,i.e. $40) and therefore using salvaged materials and common tools. The PS-PCR is the good example of the positive consequences of the development of Open Source in synthetic biology : everyone can make it, improve it and share it. The goal of this project was to share with other iGEM teams the PS-PCR and to use it like a basic tool that could be improved.

Some parts of this project were carried out at the Electrolab in Nanterre (near Paris)


caption


OUR OPEN SOURCE PCR : PS-PCR



Photos of our meetings and of the human practice team:



Written by Caroline and Damir