Team:Bielefeld-Germany/Labjournal/Molecular

From 2013.igem.org

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</div>
</div>
<div class="standard_protocol">
<div class="standard_protocol">
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<h2>Phusion PCR</h2>
 
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<table border=1 style="float:left; padding-left:10px">
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</table>
</table>
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<br><br><br><br><br><br><br><br><br><br>
 
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<h2>Colony PCR</h2>
 
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<p> - Pick one colony with a sterile tip and elute it in 100 µL ddH20 or medium </p>
 
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<p> - Store the colony in 4 °C while colony PCR is running <p>
 
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<p> - One reaction mix contains: </p>
 
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<p> - 10 µL 5x buffer </p>
 
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<p> - 2 µL MgCl2 (25 mM stock) </p>
 
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<p> - 1 µL dNTPs </p>
 
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<p> - 0.5 µL primer mix (prefix/suffix primers or sequencing primers) </p>
 
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<p> - 35.25 µL ddH2O </p>
 
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<p> - 0.25 µL  BioTaq polymerase (BIOLINE) </p>
 
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<p> - 1 µL template </p>
 
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<p> - PCR program: </p>
 
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<p>    - Start: 3 min, 98 °C </p>
 
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<p>    - 30 cycles of: </p>
 
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<p>        - 30 s, 98 °C </p>
 
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<p>        - 30 s, 55 °C </p>
 
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<p>        - 30 s / 1 kb template, 72 °C </p>
 
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<p>    - Finish: 5 min, 72 °C </p>
 
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<p> Gel electrophoresis: check the fragment size </p>
 
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<p> Plate the correct colony </p>
 
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<br><br><br><br><br><br><br><br>
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<br><br><br><br><br><br><br>
</div>
</div>
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+
*a2
 +
**b2
 +
***c2
 +
<br><br>
<div class="cyt_frag1_headline">
<div class="cyt_frag1_headline">
<a name="cyt_frag1"><span style="color:#ff6600">[Cytochromes]</span> Phusion 50ul for mtrCAB Fragment1</span></a>
<a name="cyt_frag1"><span style="color:#ff6600">[Cytochromes]</span> Phusion 50ul for mtrCAB Fragment1</span></a>

Revision as of 11:30, 6 September 2013




PCR Protocols and Programs

Reagent 1x 8x
Hf-Buffer 5x 10.0 88.0
dNTPs (10mM) 2.0 17.6
Primer1 (10mM) 1.0 8.8
Primer2 (10mM) 1.0 8.8
Template (16.5ng) 3.0 26.4
DMSO 4.0 35.2
Phusion (0.5u) 1.0 8.8
H2O 26.0 228.8







*a2 **b2 ***c2

Reagent 1x 8x
Hf-Buffer 5x 10.0 88.0
dNTPs (10mM) 2.0 17.6
Primer1 (10mM) 1.0 8.8
Primer2 (10mM) 1.0 8.8
Template (16.5ng) 3.0 26.4
DMSO 4.0 35.2
Phusion (0.5u) 1.0 8.8
H2O 26.0 228.8
Program Phusion
98 °C98 °C68 °C72 °C72 °C
30s 10s30s 1:356:00
35 cycles
Notes:
Size: 1800bp
Primer1:
Primer2:













Reagent 1x 8x
Hf-Buffer 5x 10.0 88.0
dNTPs (10mM) 2.5 22.0
Primer1 (10mM) 1.0 8.8
Primer2 (10mM) 1.0 8.8
Template (5.5ng/ul)2.0 17.6
DMSO 3.0 26.4
Phusion (0.5u) 1.0 8.8
H2O 29.5 259.6
Program Phusion
98 °C98 °C60 °C72 °C72 °C
1:00 10s30s 30s6:00
35 cycles
Notes:
Size: 330bp
Primer1:
Primer2:













Reagent 1x 8x
Hf-Buffer 5x 10.0 88.0
dNTPs (10mM) 2.5 22.0
Primer1 (10mM) 1.0 8.8
Primer2 (10mM) 1.0 8.8
Template (5.5ng/ul)2.0 17.6
DMSO 3.0 26.4
Phusion (0.5u) 1.0 8.8
H2O 29.5 259.6
Program Phusion
98 °C98 °C70 °C72 °C72 °C
30s 10s30s 50s6:00
35 cycles
Notes:
Size: 3000bp
Primer1:
Primer2:













Reagent 1x 8x
GC-Buffer 5x 10.0 88.0
dNTPs (10mM) 2.0 17.6
Primer1 (10mM) 1.25 11.0
Primer2 (10mM) 1.25 11.0
Template (5.5ng/ul)1.0 8.8
DMSO 1.5 13.2
Phusion (0.5u) 0.5 4.4
H2O 32.5 286.0
Program Phusion
98 °C98 °C70 °C72 °C72 °C
45s 30s1:00 45s5:00
35 cycles
Notes:
Size: 2070bp
Primer1_Gibson:
Primer2_Gibson:
Primer1:
Primer2:













Reagent 1x 8x
Hf-Buffer 5x 10.0 88.0
dNTPs (10mM) 2.5 22.0
Primer1 (10mM) 1.0 8.8
Primer2 (10mM) 1.0 8.8
Template (5.5ng/ul)2.0 17.6
DMSO 3.0 26.4
Phusion (0.5u) 1.0 8.8
H2O 29.5 259.6
Program Phusion
98 °C98 °C60 °C72 °C72 °C
30s 10s30s 1:156:15
35 cycles
Notes:
Size: 5150bp
Primer1:
Primer2:













Reagent 1x 8x
Hf-Buffer 5x 10.0 88.0
dNTPs (10mM) 2.0 17.6
Primer1 (10mM) 1.0 8.8
Primer2 (10mM) 1.0 8.8
Template (5.5ng/ul)3.0 26.4
DMSO 3.0 26.4
Phusion (0.5u) 1.0 8.8
H2O 29.5 255.2
Program Phusion
98 °C98 °C68 °C72 °C72 °C
30s 10s30s 1:356:00
35 cycles
Notes:
Size: 6311bp
Primer1:
Primer2: