Team:Bielefeld-Germany/Labjournal/Molecular

From 2013.igem.org

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<p> - Dry column</p>
<p> - Dry column</p>
<p> - Elute in 75 µL of elution buffer</p>
<p> - Elute in 75 µL of elution buffer</p>
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<p> -</p>
 
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<p> -</p>
 
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<p> -</p>
 
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<p> -</p>
 
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</div>
</div>
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<br><br>
 
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<h2>Specific Protocols</h2>
 
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<br>
 
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<div class="cyt_frag1_headline">
 
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<a name="cyt_frag1"><span style="color:#ff6600">[Cytochromes]</span> Phusion 50ul for mtrCAB Fragment1</span></a>
 
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</div>
 
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<div class="cyt_frag1">
 
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<table border=1 style="float:left; padding-left:10px">
 
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      <col width="150">
 
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      <col width="50">
 
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      <col width="50">
 
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<tr> <th>Reagent</th>         <th>1x</th> <th>8x</th> </tr>
 
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<tr> <td>Hf-Buffer 5x</td>      <td align="right">10.0</td> <td align="right">88.0</td> </tr>
 
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<tr> <td>dNTPs (10mM)</td>  <td align="right">2.0</td> <td align="right">17.6</td> </tr>
 
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<tr> <td>Primer1 (10mM)</td> <td align="right">1.0</td> <td align="right">8.8</td> </tr>
 
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<tr> <td>Primer2 (10mM)</td> <td align="right">1.0</td> <td align="right">8.8</td> </tr>
 
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<tr> <td>Template (16.5ng)</td> <td align="right">3.0</td> <td align="right">26.4</td> </tr>
 
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<tr> <td>DMSO</td>         <td align="right">4.0</td>    <td align="right">35.2</td> </tr>
 
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<tr> <td>Phusion (0.5u)</td>        <td align="right">1.0</td> <td align="right">8.8</td> </tr>
 
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<tr> <td>H2O</td>          <td align="right">26.0</td> <td align="right">228.8</td> </tr>
 
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</table>
 
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<table border=1 style="float:left; margin-left:20px">
 
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      <col width="50">
 
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      <col width="50">
 
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      <col width="50">
 
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      <col width="50">
 
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      <col width="50">
 
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<tr><th colspan="5">Program Phusion</th></tr>
 
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<tr align="center"><td>98 °C</td><td>98 °C</td><td>68 °C</td><td>72 °C</td><td>72 °C</td></tr>
 
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<tr align="center"><td>30s</td> <td>10s</td><td>30s</td> <td>1:35</td><td>6:00</td></tr>
 
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<tr><td></td><td colspan="3" align="center">35 cycles</td><td></td></tr>
 
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<tr><td colspan="5">
 
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<b><u>Notes:</u></b>
 
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<br>Size: 1800bp
 
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<br>Primer1:
 
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<br>Primer2:
 
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<br>
 
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</td></tr>
 
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</table>
 
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<br><br><br><br><br><br><br><br><br><br><br><br>
 
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</div>
 
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<div class="cyt_frag2_headline">
 
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<a name="cyt_frag2"><span style="color:#ff6600">[Cytochromes]</span> Phusion 50ul for mtrCAB Fragment2</span></a>
 
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</div>
 
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<div class="cyt_frag2">
 
-
<table border=1 style="float:left; padding-left:10px">
 
-
      <col width="150">
 
-
      <col width="50">
 
-
      <col width="50">
 
-
<tr> <th>Reagent</th>         <th>1x</th> <th>8x</th> </tr>
 
-
<tr> <td>Hf-Buffer 5x</td>      <td align="right">10.0</td> <td align="right">88.0</td> </tr>
 
-
<tr> <td>dNTPs (10mM)</td>  <td align="right">2.5</td> <td align="right">22.0</td> </tr>
 
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<tr> <td>Primer1 (10mM)</td> <td align="right">1.0</td> <td align="right">8.8</td> </tr>
 
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<tr> <td>Primer2 (10mM)</td> <td align="right">1.0</td> <td align="right">8.8</td> </tr>
 
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<tr> <td>Template (5.5ng/ul)</td><td align="right">2.0</td> <td align="right">17.6</td> </tr>
 
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<tr> <td>DMSO</td>         <td align="right">3.0</td>    <td align="right">26.4</td> </tr>
 
-
<tr> <td>Phusion (0.5u)</td>        <td align="right">1.0</td> <td align="right">8.8</td> </tr>
 
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<tr> <td>H2O</td>          <td align="right">29.5</td> <td align="right">259.6</td> </tr>
 
-
 
-
</table>
 
-
 
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<table border=1 style="float:left; margin-left:20px">
 
-
      <col width="50">
 
-
      <col width="50">
 
-
      <col width="50">
 
-
      <col width="50">
 
-
      <col width="50">
 
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<tr><th colspan="5">Program Phusion</th></tr>
 
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<tr align="center"><td>98 °C</td><td>98 °C</td><td>60 °C</td><td>72 °C</td><td>72 °C</td></tr>
 
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<tr align="center"><td>1:00</td> <td>10s</td><td>30s</td> <td>30s</td><td>6:00</td></tr>
 
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<tr><td></td><td colspan="3" align="center">35 cycles</td><td></td></tr>
 
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<tr><td colspan="5">
 
-
<b><u>Notes:</u></b>
 
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<br>Size: 330bp
 
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<br>Primer1:
 
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<br>Primer2:
 
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<br>
 
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</td></tr>
 
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</table>
 
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<br><br><br><br><br><br><br><br><br><br><br><br><br>
 
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</div>
 
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<br><br><br><br><br><br><br><br><br><br><br><br><br>
 
<br><br><br><br><br><br><br><br><br><br><br><br><br>
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Revision as of 21:38, 25 September 2013






Genetic enginering protocols



For the isolation following kit has been used: Fermentas GeneJET™ Plasmid Miniprep Kit

- Centrifuge 10 mL of over-night liquid culture

- Resuspend pellet in 800 µL of resuspension solution

- Ribolyse three times for 60 s with 6500 rpm (30 s break between every run, 400 mg beads)

- Centrifuge 3 min at 10,000 rpm

- Transfer 500 µL of supernatant into new 2 mL tube

- Add 500 µL of lysis buffer, invert 4 - 6 times

- Add 700 µL of neutralisation buffer, invert 4 - 6 times

- Centrifuge 10 min at 12,000 rpm

- Transfer 2 x 600 µL of supernatant into spin column (centrifuge down each time for 30 s at 12,000 rpm)

- Two wash steps with 750 µL of washing buffer

- Dry column

- Elute in 75 µL of elution buffer