Team:Duke/Modeling/Codes

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Contents

Mathematical Modeling of Bistable Toggle Switch

Codes

Thermodynamic Model

  1. P_bound vs. Number of Binding Sites (MATLAB).
  2. P_bound vs. Binding Strengths (MATLAB).



Kinetic Model

  1. Bifurcation Region for Different Promoter Strengths (Mathematica).
  2. Bifurcation Region for Different Binding Strengths (Mathematica).
  3. Bifurcation Region for Different Leakiness (Mathematica).


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Modeling Pages

  1. Cooperativity and Hill Equation
  2. Thermodynamic Model: Introduction
  3. Thermodynamic Model: Application
  4. Kinetic Model

Supplementary Materials

  1. Derivation of the Thermodynamic Model
  2. MATLAB/Mathematica Codes Used (You are here)





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