Team:TU-Delft/Protocol 6

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<h2 align="center">Protocols</h2>
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Our project deals with <i>E.coli</i> cells which sense Auto-inducing peptides (AIPs) from the <i>Staphylococcus aureus</i> and starts producing Antimicrobial peptides in order to kill the <i>Staphylococcus aureus</i>. Different protocols used during the project are described below.
 
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  <li> <a href="https://2013.igem.org/Team:TU-Delft/Protocol_1" style="text-decoration: none""><font color="#0080FF" size="3">Transforming Parts from Distribution kit</font></a> </li>
 
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<li> <a href="https://2013.igem.org/Team:TU-Delft/Protocol2" style="text-decoration: none""><font color="#0080FF" size="3">Growing the Single Colonies from the Agar Plates</font></a> </li>
 
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<li> <a href="https://2013.igem.org/Team:TU-Delft/Protocol_3" style="text-decoration: none""><font
 
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color="#0080FF" size="3"> Making glycerol stocks</font></a> </li>
 
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<li> <a href="https://2013.igem.org/Team:TU-Delft/Protocol_4" style="text-decoration: none""><font
 
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color="#0080FF" size="3"> Miniprep Protocol</font></a> </li>
 
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<li> <a href="https://2013.igem.org/Team:TU-Delft/Protocol_5" style="text-decoration: none""><font
 
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color="#0080FF" size="3"> Restriction digestion</font></a> </li>
 
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<li> <a href="https://2013.igem.org/Team:TU-Delft/Protocol_6" style="text-decoration: none""><font
 
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color="#0080FF" size="3"> Ligation</font></a> </li>
 
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<li> <a href="https://2013.igem.org/Team:TU-Delft/Protocol_7" style="text-decoration: none"" ><font
 
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<li> <a href="https://2013.igem.org/Team:TU-Delft/Protocol_8" style="text-decoration: none""><font
 
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color="#0080FF" size="3">  PCR Purification</font></a> </li>
 
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<li> <a href="https://2013.igem.org/Team:TU-Delft/Protocol_9" style="text-decoration: none""><font
 
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color="#0080FF" size="3">  Tricine Gels</font></a> </li>
 
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<li> <a href="https://2013.igem.org/Team:TU-Delft/Protocol_10" style="text-decoration: none""><font color="#0080FF" size="3">General Peptide Production</font></a> </li>
 
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Revision as of 12:39, 1 October 2013



Protocols

Our project deals with E.coli cells which sense Auto-inducing peptides (AIPs) from the Staphylococcus aureus and starts producing Antimicrobial peptides in order to kill the Staphylococcus aureus. Different protocols used during the project are described below.



Ligation

Requirements:

  1. Cut Insert DNA
  2. Cut Vector DNA
  3. Ligase buffer
  4. T4 DNA ligase
  5. Distilled water

Prodecure:

  1. Calculate the amount of vector DNA and insert DNA to add based on the ratio of the DNA and vector(3:1),if insert DNA size is 5 times smaller than vector DNA or 1:1 ratio if both sizes are same.
  2. Add suitable amount of distilled water to make up total volume to 50 μL.
  3. Add 1 μL T4 DNA ligase buffer.
  4. Add 1 μL T4 DNA ligase.
  5. Ligate at 16°C overnight or leave it at room temperature for 4 hours.

The next step would be to transform the new construct (approx ~ 1-2μL)into competent cells.

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