SynSafe
We aim to transfer the outcomes attained in laboratories to our daily lives by implementing it on a larger scale and alterations of organisms whether genetical or epigenetical is one way to do this. However this is not always possible as we cannot predict how an altered organism will adapt to the natural environment and what it’s effects on the ecosystem will be. Hence, safety and security occupy a great space of importance when it comes to devising projects for iGEM; risks must be lowered at a maximal level.
‘Two heads are better than one’ is the best saying to depict our approach on safety. This year, we read the abstracts and e-mailed most European iGEM teams to question and discuss the safety of their projects. Scroll down to view the answers of Grenoble-EMSE-LSU and METU-Turkey. Besides collaborating, we tried to increase each teams safety by preparing them for the obvious that can be questioned. With the support of iGEM, our aim is to form a biosafety congress in the future years because synthetic biology is like a potential limitless world source to anything that can be imagined by us. If Synthetic Biology is used for the right purposes then it serves possibilities from treating the untreatable illnesses to erasing the word poverty from our dictionaries via feeding the hungry. Yet, it can also result in mass slaughter or the production of dangerous weapons such as atomic bombs or even worse. Hence, strict rules and regulations of safety is a must in this field and ATOMS-Turkiye decided to take the first step with SynSafe to raise awareness of its importance once again.
Our mail to Grenoble IGEM team
Dear Grenoble İGEM team,
With a great project comes a great responsibility of finding the best solution to the safety issues we encounter and most oftenly, figuring the main safety areas that needs concentrating on can be pretty difficult. This year iGEM has introduced strict rules and regulations for safety which is a clear indication of how much effort and importance they are expecting us to show!
So, why dont we gather and see safety as a way to benefit eachother? Because not only will this open new doors for our future safety plans but will also increase the probability of reaching our aimed destinations. The Lyon jamborees is a great opportunity to form a platform where we can discuss our safety issues, what we have done to overcome them and the main parts that have challenged us the most.
After reading your abstract a few questions on the safety of your projects popped into our minds. If you are interested in forming a discussion platform, we would be delighted receive your answers as this, on the day of the platform will enable your team to see how much progression was made with safety from today onwards.
We would be really grateful to read your questions on the safety of our project too J
iGEM cares about safety, so do we! Lets take a step together and make a change in how we handle this caseJ
Questions
1-) Does this protein have any effect on human or other living organisms health? Have you thought of it being possibly poisonous to them?
Their Response
Dear ATOMS-TÜRKİYE iGEM Team 2013,
I am Stewart Humble, a member of the iGEM Grenoble-EMSE-LSU Team for 2013. I was asked to give a quick informal overview and comparison with our project and my previous research at LSU to address some of the biosafety issues and questions that may arise for our team.
As an undergraduate at LSU, I performed my thesis work on the synthesis and cellular investigations of a specific photosensitizer that is a chlorophyll derivative called Chlorin e6. My work concentrated on the applications of this photosensitizer in the clinical process known as photodynamic therapy (PDT). PDT is used to destroy tumors, and involves three key components: a photosensitizer, light, and tissue oxygen.
By modifying this derivative through the addition of positively charged amino acids (lysine), I was able to give strengthen its amphiphilic characteristics. Amphiphilicity is a measure of the extent to which a molecule can behave in both a polar and nonpolar way. This gives these molecules the ability to dissolve in the blood and also to pass through hydrophobic cell membranes. After biological studies, I found that the molecular photosensitizer I constructed was very potent in terms of phototoxicity, which means that even at very low concentration there was destruction of the cancer cells.
In terms of biosafety, I want to focus on the basic principles of biochemistry and cell-photosensitizer interaction. In general, my photosensitizer was much more of a safety risk due to its ability to uptaken into individual cells from the extracellular space. Additionally, it is not heavily altered by spending time in the extracellular space due to its amphiphilic characteristics.
KillerRed, however, is a "genetic" photosensitizer that is created within a cell of interest and (as far as we know) can only act upon that individual cell. This is due to the very unique fact that KillerRed is a protein that folds to form a chromophore that produces 10-fold more reactive oxygen species (ROS) than other fluorescent proteins such as GFP. All proteins have unique foldings that can be quite sensitive to its surroundings (pH, temperature, etc.) and if a cell containing KillerRed were to lyse and release the photosensitizer, I believe that no other cells would be greatly (if al all) affected due to two main points:
1.) The KillerRed protein may become denatured (unfolded) due to a change in environment, breaking apart the chromophore and rendering all ROS production to null
2.) The KillerRed protein maintained its proper folding, but fails to enter any nearby cells due to its size (macromolecule) and inability to be uptaken into other cells (lack of receptors, etc to trigger any other form of uptake)
I hope this explanation will help to address some of the safety concerns we will be collaborating upon for the iGEM Competition. Please let our team know if anything further is needed. Thanks!
Our mail to METU IGEM team
Dear Metu İGEM team,
With a great project comes a great responsibility of finding the best solution to the safety issues we encounter and most oftenly, figuring the main safety areas that needs concentrating on can be pretty difficult. This year iGEM has introduced strict rules and regulations for safety which is a clear indication of how much effort and importance they are expecting us to show!
So, why dont we gather and see safety as a way to benefit eachother? Because not only will this open new doors for our future safety plans but will also increase the probability of reaching our aimed destinations. The Lyon jamborees is a great opportunity to form a platform where we can discuss our safety issues, what we have done to overcome them and the main parts that have challenged us the most.
After reading your abstract a few questions on the safety of your projects popped into our minds. If you are interested in forming a discussion platform, we would be delighted receive your answers as this, on the day of the platform will enable your team to see how much progression was made with safety from today onwards.
We would be really grateful to read your questions on the safety of our project too J
iGEM cares about safety, so do we! Lets take a step together and make a change in how we handle this caseJ
Questions
1) When you change the genetic information of bacteria in bees’ guts this may have the possibility of changing the genetic material of most bacterial flora. Have you thought about a possible solution to this?
2) Will this change effect the bees honey production and so affect humans and animals health?
3) How will you manage the amount of Coumaric Acid produced?
4) Will coumaric acid affect plants which the bees’ touch?
Metu hope your project is going well. It's a pitty we couldn't make it to the national re-union in Istanbul but do hope you made the most of it :)
ATOMS Turkiye
Their Response
Hi ATOMS Turkiye,
For the first question, we will introduce our gene construct to the bacteria before hand and then introduce it to the host bee via food (a process called paratransgenesis), so it is highly unlikely for the other bacteria to get this part. Also, our system is optimized for b. subtilis, the promoters we used and the products as a whole have slim to no chance of functioning anywhere else.
For the second question, the bacillus strain we selected is native to the bees' gut. It is normally not found in the honey stomach of the bee, even if the bacteria were to get into honey, it will still be in the natural levels. Other than that, according to literature, IPTG is never traced in honey, so our little germs, even if they can make it into honey, will be killed because of our kill switch.
The third question was a hard one because there is actually no real data about the p-coumaric acid levels let alone it is not known if such a thing as p-coumaric acid overdose exists. We used in our system a constitutive promoter for the production of it too. What we expect and what we could argue from literature is that having p-coumaric acid is in all cases preferable. Maybe exceeding levels could cause increased energy consumption and maybe even acid accumulation, a decrease in tyrosine(a precursor of p-coumaric acid) etc. What most probably will happen (and what we actually hope for) is that the natural feedback mechanism will be triggered and control the process. But you are right, a inductive system would have been prettier :)
For the last question, p-coumaric acid is mostly produced by plants. Even vanilla production and cinnamon flavour begins with p-coumaric acid. Many plants produce p-coumaric acid so p-coumaric acid exposure should not cause any harm to them. Besides, p-coumaric acid will be produced in the midgut of the bee, so it is unlikely for p-coumaric acid to find its way directly to the plant.
Kind regards,
Oguz Bolgi on behalf of METU-Turkey
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