Team:Uppsala/modeling
From 2013.igem.org
(Difference between revisions)
Sabrijamal (Talk | contribs) |
|||
(13 intermediate revisions not shown) | |||
Line 12: | Line 12: | ||
</style> | </style> | ||
+ | <script type="text/javascript"> | ||
+ | /*Acts once the document is loaded*/ $(document).ready(function() { /*Move the tn-main-wrap as child of <body>*/ $("#tn-main-wrap-wrap").prependTo($("body")); /*Move the menubars in the tn-main-wrap*/ $("#menubar.left-menu").appendTo($("#tn-main-wrap")); $("#menubar.right-menu").appendTo($("#tn-main-wrap")); | ||
+ | /*Spoiler JS*/ $(".tn-spoiler div").slideUp(); $(".tn-spoiler a").click(function(e) { e.preventDefault(); $(".tn-spoiler-active").removeClass("tn-spoiler-active"); $(this).parent().addClass("tn-spoiler-active"); $(".tn-spoiler").not(".tn-spoiler-active").children("div").slideUp(); $(".tn-spoiler-active").children("div").slideToggle(); }); | ||
+ | /*Add favicon*/ $("link[rel='shortcut icon']").remove(); $("head").append("<link rel='shortcut icon' type='image/png' href='https://static.igem.org/mediawiki/2013/6/6d/Uppsalas-cow-con.png'>"); }); | ||
+ | </script> | ||
</head> | </head> | ||
Line 29: | Line 34: | ||
<div id="igem"><a href="https://2013.igem.org/Main_Page"><img class="igem" src="https://static.igem.org/mediawiki/2013/b/b8/Uppsala2013_Uppsala_IGEM_log_blue.png"></a></div> | <div id="igem"><a href="https://2013.igem.org/Main_Page"><img class="igem" src="https://static.igem.org/mediawiki/2013/b/b8/Uppsala2013_Uppsala_IGEM_log_blue.png"></a></div> | ||
+ | |||
+ | <img class="slogan" src="https://static.igem.org/mediawiki/2013/a/ad/Uppsala2013_Header.png"> | ||
</div> | </div> | ||
Line 56: | Line 63: | ||
<li><a href="https://2013.igem.org/Team:Uppsala/metabolic-engineering">Metabolic engineering</a> | <li><a href="https://2013.igem.org/Team:Uppsala/metabolic-engineering">Metabolic engineering</a> | ||
<ul> | <ul> | ||
- | <li><a href="https://2013.igem.org/Team:Uppsala/p-coumaric-acid"> | + | <li><a href="https://2013.igem.org/Team:Uppsala/p-coumaric-acid">p-Coumaric acid</a></li> |
<li><a href="https://2013.igem.org/Team:Uppsala/resveratrol">Resveratrol</a></li> | <li><a href="https://2013.igem.org/Team:Uppsala/resveratrol">Resveratrol</a></li> | ||
<li><a href="https://2013.igem.org/Team:Uppsala/lycopene">Lycopene</a></li> | <li><a href="https://2013.igem.org/Team:Uppsala/lycopene">Lycopene</a></li> | ||
Line 77: | Line 84: | ||
<li><a href="https://2013.igem.org/Team:Uppsala/modeling" id="list_type1"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/6/63/Uppsala2013_Modeling.png"></a> | <li><a href="https://2013.igem.org/Team:Uppsala/modeling" id="list_type1"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/6/63/Uppsala2013_Modeling.png"></a> | ||
<ul> | <ul> | ||
- | <li><a href="https://2013.igem.org/Team:Uppsala/P-Coumaric-acid-pathway"> | + | <li><a href="https://2013.igem.org/Team:Uppsala/P-Coumaric-acid-pathway">Kinetic model</a></li> |
<li><a href="https://2013.igem.org/Team:Uppsala/modeling-tutorial">Modeling tutorial </a></li> | <li><a href="https://2013.igem.org/Team:Uppsala/modeling-tutorial">Modeling tutorial </a></li> | ||
+ | |||
+ | <li><a href="https://2013.igem.org/Team:Uppsala/toxicity-model">Toxicity model</a></li> | ||
</ul></li> | </ul></li> | ||
<li><a href="https://2013.igem.org/Team:Uppsala/parts" id="list_type2"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/e/eb/Uppsala2013_parts.png"></a></li> | <li><a href="https://2013.igem.org/Team:Uppsala/parts" id="list_type2"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/e/eb/Uppsala2013_parts.png"></a></li> | ||
Line 87: | Line 96: | ||
<li><a href="https://2013.igem.org/Team:Uppsala/carotenoid-group">Carotenoid group</a></li> | <li><a href="https://2013.igem.org/Team:Uppsala/carotenoid-group">Carotenoid group</a></li> | ||
<li><a href="https://2013.igem.org/Team:Uppsala/chassi-group">Chassi group</a></li> | <li><a href="https://2013.igem.org/Team:Uppsala/chassi-group">Chassi group</a></li> | ||
+ | <li><a href="https://2013.igem.org/Team:Uppsala/advisors">Advisors</a></li> | ||
</ul></li> | </ul></li> | ||
Line 96: | Line 106: | ||
<li><a href="https://2013.igem.org/Team:Uppsala/public-opinion">Public opinion </a></li> | <li><a href="https://2013.igem.org/Team:Uppsala/public-opinion">Public opinion </a></li> | ||
<li><a href="https://2013.igem.org/Team:Uppsala/Outreach">High school & media </a></li> | <li><a href="https://2013.igem.org/Team:Uppsala/Outreach">High school & media </a></li> | ||
- | + | <li><a href="https://2013.igem.org/Team:Uppsala/bioart">BioArt</a></li> | |
+ | <li><a href="https://2013.igem.org/Team:Uppsala/LactonutritiousWorld">A LactoWorld</a></li> | ||
+ | <li><a href="https://2013.igem.org/Team:Uppsala/killswitches">Killswitches</a></li> | ||
+ | <li><a href="https://2013.igem.org/Team:Uppsala/realization">Patent</a></li> | ||
</ul></li> | </ul></li> | ||
- | <li><a href="https://2013.igem.org/Team:Uppsala/attribution" id="list_type4"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/5/5d/Uppsala2013_Attributions.png"></a | + | <li><a href="https://2013.igem.org/Team:Uppsala/attribution" id="list_type4"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/5/5d/Uppsala2013_Attributions.png"></a></li> |
- | + | ||
- | + | ||
- | + | ||
<li><a href="https://2013.igem.org/Team:Uppsala/notebook" id="list_type3"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/3/36/Uppsala2013_Notebook.png"></a> | <li><a href="https://2013.igem.org/Team:Uppsala/notebook" id="list_type3"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/3/36/Uppsala2013_Notebook.png"></a> | ||
<ul> | <ul> | ||
<li><a href="https://2013.igem.org/Team:Uppsala/safety-form">Safety form</a></li> | <li><a href="https://2013.igem.org/Team:Uppsala/safety-form">Safety form</a></li> | ||
+ | <li><a href="https://2013.igem.org/Team:Uppsala/protocols">Protocols</a></li> | ||
</ul></li> | </ul></li> | ||
</ul> | </ul> | ||
Line 126: | Line 137: | ||
<br><br> | <br><br> | ||
- | The model for p- | + | The kinetic model for p-Coumaric acid production can be found <b>here</b> <a href="https://2013.igem.org/Team:Uppsala/P-Coumaric-acid-pathway" style="display:block;height:100%;width:100%"> |
- | + | We have also made a toxicity evaluation of the content of our yoghurt which can be found in the menu above. | |
+ | </div> | ||
<br><br> | <br><br> | ||
<h1>Goal number two: Accessability</h1> | <h1>Goal number two: Accessability</h1> | ||
Line 134: | Line 146: | ||
<img class="figure_pic" src="https://static.igem.org/mediawiki/2013/2/27/Uppsala2013_ModelingDummies.png" style="border: 1px solid;"> | <img class="figure_pic" src="https://static.igem.org/mediawiki/2013/2/27/Uppsala2013_ModelingDummies.png" style="border: 1px solid;"> | ||
+ | <br><br> | ||
+ | The tutorial for modeling can be found <b>here</b> | ||
</a></diV> | </a></diV> | ||
</div> <!-- main_ontent ends --> | </div> <!-- main_ontent ends --> | ||
<div id="bottom-pic"> | <div id="bottom-pic"> | ||
- | + | ||
</div> | </div> | ||
Latest revision as of 18:27, 28 October 2013
Modeling
When we first set out to create this year's modeling contibution, we asked ourselves what we wanted from our project. None of us had much experience in the ways of modeling biological systems, so the first objective was to find inspiration for the project at hand. Naturally, the first place to look was the wikis of the teams that came before us. We wanted to see what other teams had accomplished, what they had brought to the table and perhaps what we thought could be improved in their modeling projects. After much searching, and more than a little contemplation, we arrived at the decision of making two different models, with two quite different goals.
Goal number one: Applicability
The goal of the first model was to create practical predictions about the systems we were about to create, and thus make better design decisions in order to achieve an optimal metabolite yield. This required a more sophisticated model that took into consideration all the complex parameters influencing a biological system. In the end, we managed to arrive to a model that did just that for the metabolic pathway producing p-Coumaric acid.
The kinetic model for p-Coumaric acid production can be found here We have also made a toxicity evaluation of the content of our yoghurt which can be found in the menu above.
The kinetic model for p-Coumaric acid production can be found here We have also made a toxicity evaluation of the content of our yoghurt which can be found in the menu above.