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Team:TU-Munich/Results/Localization
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| - | == | + | ==Localization== |
| - | === Experimental Setup === | + | [[File:TUM13_Lokalisation_1.4.png|thumb|center|910px| '''Figure 1''': Overview of different possible localisations for effector proteins.]] |
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| + | === Secretion via SERK signal peptide (SERK-SigP) === | ||
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| + | ==== Experimental Setup ==== | ||
In our project the differential localisation of effector proteins was an important task which is also important for later iGEM teams who are interested in working with ''Physcomitrella patens''. Through out the literature there are several different signal peptides which have been used to secrete proteins out of the moss cell. We decided to use two different signal peptides in our project. The first one is the Igkappa secretion signal from ''Mus musculus'' which has been recently shown to be functional as a signal peptide in ''Physco'' [http://www.ncbi.nlm.nih.gov/pubmed/19021876 Gitzinger et al., 2009]. Beside this proven signal peptide we also had the signal peptide which we derived from the SERK receptor. As it was interesting for us to know which of these signal peptides workes best we cloned both of them ahead of the NanoLuc luciferase in RFC[25]. As you can see above we cloned these genes of interest into our expression vector for stable integration. After the transfection we selected for four weeks stable transgenic moss lines using the antibiotic G418. In the end we picked 8 clones from the corresponding plates and performed an analysis of 8 single clones. This is necessary as the localisation of the transgene within the gene can have drastic effects on the expression strength of the transgene. | In our project the differential localisation of effector proteins was an important task which is also important for later iGEM teams who are interested in working with ''Physcomitrella patens''. Through out the literature there are several different signal peptides which have been used to secrete proteins out of the moss cell. We decided to use two different signal peptides in our project. The first one is the Igkappa secretion signal from ''Mus musculus'' which has been recently shown to be functional as a signal peptide in ''Physco'' [http://www.ncbi.nlm.nih.gov/pubmed/19021876 Gitzinger et al., 2009]. Beside this proven signal peptide we also had the signal peptide which we derived from the SERK receptor. As it was interesting for us to know which of these signal peptides workes best we cloned both of them ahead of the NanoLuc luciferase in RFC[25]. As you can see above we cloned these genes of interest into our expression vector for stable integration. After the transfection we selected for four weeks stable transgenic moss lines using the antibiotic G418. In the end we picked 8 clones from the corresponding plates and performed an analysis of 8 single clones. This is necessary as the localisation of the transgene within the gene can have drastic effects on the expression strength of the transgene. | ||
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For the experiments 100 µl of Knop-media at pH 6.5 were transferred into 96-well plates. Subsequently single moss colonies were added to these wells and the the moss plants were incubated for 12 h in order to give the plants enough time to secrete the NanoLuc luciferase with the different signal peptides. The next day 50 µl of the supernatant in which the cells were cultivated was transfered to an empty well. The NanoGlow substrate (sponsored by Promega) was diluted in Water and 50 µl of the substrate was added rapidly to the 96-well plate. The luminescense was quantified for 1 sec in a BioTek II plate reader with a filter of 460 nm. | For the experiments 100 µl of Knop-media at pH 6.5 were transferred into 96-well plates. Subsequently single moss colonies were added to these wells and the the moss plants were incubated for 12 h in order to give the plants enough time to secrete the NanoLuc luciferase with the different signal peptides. The next day 50 µl of the supernatant in which the cells were cultivated was transfered to an empty well. The NanoGlow substrate (sponsored by Promega) was diluted in Water and 50 µl of the substrate was added rapidly to the 96-well plate. The luminescense was quantified for 1 sec in a BioTek II plate reader with a filter of 460 nm. | ||
| - | === Results === | + | ==== Results ==== |
The comparison of the two signal peptides gave a very clear result in our experiment. The Igkappa signal sequence only gives a luminescense signal which is slightly higher than the signal obtained for the wild type plants for which the autoluminescense of the substrate is responsible for the signal. In contrast the SERK signal peptide yielded luminescense signals in the supernatant that were about 1000-fold higher compared to the Igkappa signal sequence. This is also the proof that we successfully integrated a device encoding a secreted luciferase which is efficiently secreted by the moss into the supernatant. This is one of the major obstacles we had to solve in order to be able to secrete effector proteins by our PhyscoFilter. | The comparison of the two signal peptides gave a very clear result in our experiment. The Igkappa signal sequence only gives a luminescense signal which is slightly higher than the signal obtained for the wild type plants for which the autoluminescense of the substrate is responsible for the signal. In contrast the SERK signal peptide yielded luminescense signals in the supernatant that were about 1000-fold higher compared to the Igkappa signal sequence. This is also the proof that we successfully integrated a device encoding a secreted luciferase which is efficiently secreted by the moss into the supernatant. This is one of the major obstacles we had to solve in order to be able to secrete effector proteins by our PhyscoFilter. | ||
| - | == Membrane-anchor via SERK transmembrane domain (SERK-TMD) == | + | === Membrane-anchor via SERK transmembrane domain (SERK-TMD) === |
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| - | ===Verification of membrane integration by epifluorescence microscopy=== | + | ====Verification of membrane integration by epifluorescence microscopy==== |
Already during the planning phase of the trans membrane receptor we thought about how to track the localization of the receptor – or in other words how to proof the correct folding into the plasma membrane. As a very simple tool we fused genetically a GFP molecule C-terminal to the trans membrane domain of the receptor. A green fluorescence localized at the plasma membrane would hence indicate a correct folding of our receptor into the plasma membrane. | Already during the planning phase of the trans membrane receptor we thought about how to track the localization of the receptor – or in other words how to proof the correct folding into the plasma membrane. As a very simple tool we fused genetically a GFP molecule C-terminal to the trans membrane domain of the receptor. A green fluorescence localized at the plasma membrane would hence indicate a correct folding of our receptor into the plasma membrane. | ||
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The animated Z-stack of transgenic moss cells expressing the trans membrane receptor presented in Figure 1 shows a bright green fluorescence as is characteristic for GFP. This fluorescence is mainly located at the plasma membrane which would indicate that our receptor proteins have the correct localization. In comparison to the Z-stack taken from transgenic moss expressing GFP in the cytoplasm which is shown in figure six the fluorescence of the moss carrying the trans membrane receptor seems to be more associated to the plasma membrane. However voluminous vacuoles can compress the cytoplasm to a thin layer so that the green fluorescence of cytoplasmic proteins would appear as membrane associated. Hence the fluorescence shown in figure 1 is a first indication that our receptor works properly but cannot serve as a reliable evidence. Therefore we decided to execute a second method for the proof of localization of our trans membrane receptor. Furthermore it is planned for the future to do confocal laser microscopy using fluorescein-biotin conjugate and quantum dots coupled to streptavidin. Therewith the localization of the trans membrane receptor carrying FluA as an effector domain at the N-terminus should be proofed doubtless through bright fluorescence of the used fluorophores on the outside of the plasma membrane and green fluorescence of the receptor GFP on the inner side of the plasma membrane. | The animated Z-stack of transgenic moss cells expressing the trans membrane receptor presented in Figure 1 shows a bright green fluorescence as is characteristic for GFP. This fluorescence is mainly located at the plasma membrane which would indicate that our receptor proteins have the correct localization. In comparison to the Z-stack taken from transgenic moss expressing GFP in the cytoplasm which is shown in figure six the fluorescence of the moss carrying the trans membrane receptor seems to be more associated to the plasma membrane. However voluminous vacuoles can compress the cytoplasm to a thin layer so that the green fluorescence of cytoplasmic proteins would appear as membrane associated. Hence the fluorescence shown in figure 1 is a first indication that our receptor works properly but cannot serve as a reliable evidence. Therefore we decided to execute a second method for the proof of localization of our trans membrane receptor. Furthermore it is planned for the future to do confocal laser microscopy using fluorescein-biotin conjugate and quantum dots coupled to streptavidin. Therewith the localization of the trans membrane receptor carrying FluA as an effector domain at the N-terminus should be proofed doubtless through bright fluorescence of the used fluorophores on the outside of the plasma membrane and green fluorescence of the receptor GFP on the inner side of the plasma membrane. | ||
| - | ===Verification of membrane integration by shedding of the extracellular fused NanoLuc luciferase with TEV protease=== | + | ====Verification of membrane integration by shedding of the extracellular fused NanoLuc luciferase with TEV protease==== |
[[File:TUM13_SERK-Receptor.png|thumb|right|250px|'''Figure 3:''' Schematic design of an effector, in this context effector = Nanoluciferase, immobilised on a transmembrane domain.]] | [[File:TUM13_SERK-Receptor.png|thumb|right|250px|'''Figure 3:''' Schematic design of an effector, in this context effector = Nanoluciferase, immobilised on a transmembrane domain.]] | ||
We want to investigate the localisation of our synthetic receptor. For this purpose we used a transgenic moss strain which contains NanoLuc luciferase at the extracellular domain of the receptor. Between the luciferase and the transmembrane region we have added a linker consisting of a ''Strep''tag II and a TEV cleavage site. By adding the recombinant TEV protease, the TEV protease should be able to pass the cell wall and enter the appoplast, cleave the TEV cleavage site and liberate the NanoLuc luciferase. Afterwards the luciferase can be analyzed by its luminescense, the ''Strep''tag or by mass spectrometry. | We want to investigate the localisation of our synthetic receptor. For this purpose we used a transgenic moss strain which contains NanoLuc luciferase at the extracellular domain of the receptor. Between the luciferase and the transmembrane region we have added a linker consisting of a ''Strep''tag II and a TEV cleavage site. By adding the recombinant TEV protease, the TEV protease should be able to pass the cell wall and enter the appoplast, cleave the TEV cleavage site and liberate the NanoLuc luciferase. Afterwards the luciferase can be analyzed by its luminescense, the ''Strep''tag or by mass spectrometry. | ||
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After this experimental part, it is necessary to prove the theoretical deliberation. In the following we performed several experiments like SDS-Pages, Luciferase Assays and tried to bind our construct by utilizing different beads. | After this experimental part, it is necessary to prove the theoretical deliberation. In the following we performed several experiments like SDS-Pages, Luciferase Assays and tried to bind our construct by utilizing different beads. | ||
| - | ===Experimental Setup=== | + | ====Experimental Setup==== |
| - | ====First Step==== | + | =====First Step===== |
The reagents which were necessary to perform the first step of the experiment have been 1,863 ml TEV Protease Buffer, 137 µl TEV Protease (0.364 mg/ml) to get a total enzyme activity of 500 Units in each sample and as much genetically modified moss, containing the membrane bound Streptag-Luciferase-Construct, as possible. All reagents have been added to a 2 ml Tube, gently mixed and incubated over night at 4°C. A negative control containing wild type moss instead of the transgenic one was prepared, too. Before starting the incubation of the prepared samples over night, we extracted 100 µl of each one, to enable the comparison of the amount of the cut-off construct at the beginning of the incubation time and the incubation over night. | The reagents which were necessary to perform the first step of the experiment have been 1,863 ml TEV Protease Buffer, 137 µl TEV Protease (0.364 mg/ml) to get a total enzyme activity of 500 Units in each sample and as much genetically modified moss, containing the membrane bound Streptag-Luciferase-Construct, as possible. All reagents have been added to a 2 ml Tube, gently mixed and incubated over night at 4°C. A negative control containing wild type moss instead of the transgenic one was prepared, too. Before starting the incubation of the prepared samples over night, we extracted 100 µl of each one, to enable the comparison of the amount of the cut-off construct at the beginning of the incubation time and the incubation over night. | ||
| - | ====Second Step==== | + | =====Second Step===== |
In the second step both samples, incubated over night, were centrifuged at 10000 rpm for 5 minutes to make the moss cells form a pellet at the bottom of the tube. Afterwards the supernatants, where the Nanoluciferase-Streptag-Construct was expected to be found, were transferred to new 2 ml tubes. | In the second step both samples, incubated over night, were centrifuged at 10000 rpm for 5 minutes to make the moss cells form a pellet at the bottom of the tube. Afterwards the supernatants, where the Nanoluciferase-Streptag-Construct was expected to be found, were transferred to new 2 ml tubes. | ||
| - | ====Third step==== | + | =====Third step===== |
Afterwards we measured the Nanoluciferase activity in the supernatants of the transgenic moss at the beginning of the incubation time and over night. The same procedure was performed for the Wild-type moss. Additionally we measured the activity of the TEV-Protease buffer in the Luciferase-Assay, to be sure that it does not falsify our results. All samples were prepared with 50 µl supernatant mixed to 50 µl Luciferase-Substrate-Buffer. We concluded that the Luciferase activity was significant in our membrane-construct supernatants, whereas the wild-type moss did not show any significant Luciferase activity. | Afterwards we measured the Nanoluciferase activity in the supernatants of the transgenic moss at the beginning of the incubation time and over night. The same procedure was performed for the Wild-type moss. Additionally we measured the activity of the TEV-Protease buffer in the Luciferase-Assay, to be sure that it does not falsify our results. All samples were prepared with 50 µl supernatant mixed to 50 µl Luciferase-Substrate-Buffer. We concluded that the Luciferase activity was significant in our membrane-construct supernatants, whereas the wild-type moss did not show any significant Luciferase activity. | ||
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| - | ====Conclusion==== | + | =====Conclusion===== |
The Luciferase-Assay showed a significant activity rate, so there has to be a significant amount of cut-off Streptag-Nanoluciferase-Construct in the transgenic supernatant. Due to the significant results of the Luciferase-Assay of the transgenic moss supernatant, the '''prove of the existence''' and the desired orientation of our Membrane-Nanoluciferase-Construct is confirmed. | The Luciferase-Assay showed a significant activity rate, so there has to be a significant amount of cut-off Streptag-Nanoluciferase-Construct in the transgenic supernatant. Due to the significant results of the Luciferase-Assay of the transgenic moss supernatant, the '''prove of the existence''' and the desired orientation of our Membrane-Nanoluciferase-Construct is confirmed. | ||
Revision as of 23:43, 28 October 2013
Localization
Secretion via SERK signal peptide (SERK-SigP)
Experimental Setup
In our project the differential localisation of effector proteins was an important task which is also important for later iGEM teams who are interested in working with Physcomitrella patens. Through out the literature there are several different signal peptides which have been used to secrete proteins out of the moss cell. We decided to use two different signal peptides in our project. The first one is the Igkappa secretion signal from Mus musculus which has been recently shown to be functional as a signal peptide in Physco [http://www.ncbi.nlm.nih.gov/pubmed/19021876 Gitzinger et al., 2009]. Beside this proven signal peptide we also had the signal peptide which we derived from the SERK receptor. As it was interesting for us to know which of these signal peptides workes best we cloned both of them ahead of the NanoLuc luciferase in RFC[25]. As you can see above we cloned these genes of interest into our expression vector for stable integration. After the transfection we selected for four weeks stable transgenic moss lines using the antibiotic G418. In the end we picked 8 clones from the corresponding plates and performed an analysis of 8 single clones. This is necessary as the localisation of the transgene within the gene can have drastic effects on the expression strength of the transgene.
For the experiments 100 µl of Knop-media at pH 6.5 were transferred into 96-well plates. Subsequently single moss colonies were added to these wells and the the moss plants were incubated for 12 h in order to give the plants enough time to secrete the NanoLuc luciferase with the different signal peptides. The next day 50 µl of the supernatant in which the cells were cultivated was transfered to an empty well. The NanoGlow substrate (sponsored by Promega) was diluted in Water and 50 µl of the substrate was added rapidly to the 96-well plate. The luminescense was quantified for 1 sec in a BioTek II plate reader with a filter of 460 nm.
Results
The comparison of the two signal peptides gave a very clear result in our experiment. The Igkappa signal sequence only gives a luminescense signal which is slightly higher than the signal obtained for the wild type plants for which the autoluminescense of the substrate is responsible for the signal. In contrast the SERK signal peptide yielded luminescense signals in the supernatant that were about 1000-fold higher compared to the Igkappa signal sequence. This is also the proof that we successfully integrated a device encoding a secreted luciferase which is efficiently secreted by the moss into the supernatant. This is one of the major obstacles we had to solve in order to be able to secrete effector proteins by our PhyscoFilter.
Membrane-anchor via SERK transmembrane domain (SERK-TMD)
Verification of membrane integration by epifluorescence microscopy
Already during the planning phase of the trans membrane receptor we thought about how to track the localization of the receptor – or in other words how to proof the correct folding into the plasma membrane. As a very simple tool we fused genetically a GFP molecule C-terminal to the trans membrane domain of the receptor. A green fluorescence localized at the plasma membrane would hence indicate a correct folding of our receptor into the plasma membrane.
The animated Z-stack of transgenic moss cells expressing the trans membrane receptor presented in Figure 1 shows a bright green fluorescence as is characteristic for GFP. This fluorescence is mainly located at the plasma membrane which would indicate that our receptor proteins have the correct localization. In comparison to the Z-stack taken from transgenic moss expressing GFP in the cytoplasm which is shown in figure six the fluorescence of the moss carrying the trans membrane receptor seems to be more associated to the plasma membrane. However voluminous vacuoles can compress the cytoplasm to a thin layer so that the green fluorescence of cytoplasmic proteins would appear as membrane associated. Hence the fluorescence shown in figure 1 is a first indication that our receptor works properly but cannot serve as a reliable evidence. Therefore we decided to execute a second method for the proof of localization of our trans membrane receptor. Furthermore it is planned for the future to do confocal laser microscopy using fluorescein-biotin conjugate and quantum dots coupled to streptavidin. Therewith the localization of the trans membrane receptor carrying FluA as an effector domain at the N-terminus should be proofed doubtless through bright fluorescence of the used fluorophores on the outside of the plasma membrane and green fluorescence of the receptor GFP on the inner side of the plasma membrane.
Verification of membrane integration by shedding of the extracellular fused NanoLuc luciferase with TEV protease
We want to investigate the localisation of our synthetic receptor. For this purpose we used a transgenic moss strain which contains NanoLuc luciferase at the extracellular domain of the receptor. Between the luciferase and the transmembrane region we have added a linker consisting of a Streptag II and a TEV cleavage site. By adding the recombinant TEV protease, the TEV protease should be able to pass the cell wall and enter the appoplast, cleave the TEV cleavage site and liberate the NanoLuc luciferase. Afterwards the luciferase can be analyzed by its luminescense, the Streptag or by mass spectrometry.
To prove this process, we cut off our Nanoluciferase-Streptag-Construct by using the TEV-Protease. As we hypothetically know, our membrane construct is localized in the membrane and the Nanoluciferase-Streptag-Construct orientated to the Periplasma, protected by the cell-wall of our moss. In conclusion to that, the TEV protease needs to pass the cell-wall to cut off the Nanoluciferase-Streptag-Construct. This process is possible in liquid medium, because the TEV protease just has a molecular weight between 25 kDa and 27 kDa, so it can pass the cell-wall smoothly. After the TEV-Protease has entered the Periplasma of our moss cells, it cuts off the Nanoluciferase-Streptag-Construct at the TEV cleavage site. Again, this construct has in sum a molecular weight of 20 kDa (Nanoluciferase - 19 kDa, Streptag - 1 kDa), so it can pass the cell-wall due to diffusion to get to the exterior of the moss cell.
After this experimental part, it is necessary to prove the theoretical deliberation. In the following we performed several experiments like SDS-Pages, Luciferase Assays and tried to bind our construct by utilizing different beads.
Experimental Setup
First Step
The reagents which were necessary to perform the first step of the experiment have been 1,863 ml TEV Protease Buffer, 137 µl TEV Protease (0.364 mg/ml) to get a total enzyme activity of 500 Units in each sample and as much genetically modified moss, containing the membrane bound Streptag-Luciferase-Construct, as possible. All reagents have been added to a 2 ml Tube, gently mixed and incubated over night at 4°C. A negative control containing wild type moss instead of the transgenic one was prepared, too. Before starting the incubation of the prepared samples over night, we extracted 100 µl of each one, to enable the comparison of the amount of the cut-off construct at the beginning of the incubation time and the incubation over night.
Second Step
In the second step both samples, incubated over night, were centrifuged at 10000 rpm for 5 minutes to make the moss cells form a pellet at the bottom of the tube. Afterwards the supernatants, where the Nanoluciferase-Streptag-Construct was expected to be found, were transferred to new 2 ml tubes.
Third step
Afterwards we measured the Nanoluciferase activity in the supernatants of the transgenic moss at the beginning of the incubation time and over night. The same procedure was performed for the Wild-type moss. Additionally we measured the activity of the TEV-Protease buffer in the Luciferase-Assay, to be sure that it does not falsify our results. All samples were prepared with 50 µl supernatant mixed to 50 µl Luciferase-Substrate-Buffer. We concluded that the Luciferase activity was significant in our membrane-construct supernatants, whereas the wild-type moss did not show any significant Luciferase activity.
| Supernatant transgenic moss - T0 | Supernatant transgenic moss - Over night | Supernatant wild-type moss - T0 | Supernatant wild-type moss - Over night | TEV Buffer |
|---|---|---|---|---|
| 137047 | 1852775 | 5 | 20 | 3 |
Conclusion
The Luciferase-Assay showed a significant activity rate, so there has to be a significant amount of cut-off Streptag-Nanoluciferase-Construct in the transgenic supernatant. Due to the significant results of the Luciferase-Assay of the transgenic moss supernatant, the prove of the existence and the desired orientation of our Membrane-Nanoluciferase-Construct is confirmed.
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