Team:Paris Saclay/Notebook/August/6

From 2013.igem.org

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(→1 - Electrophoresis to check the PCR Colonies products : BBa_K1155004, BBa_K1155005, BBa_K1155006)
 
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==='''A - Aerobic/Anaerobic regulation system'''===
==='''A - Aerobic/Anaerobic regulation system'''===
-
===='''Objective : obtaining Bba_K1155004, Bba_K1155005, Bba_K1155006'''====
+
===='''Objective : obtaining BBa_K1155004, BBa_K1155005, BBa_K1155006'''====
-
====1 - Electrophoresis to check the Colony PCR products : Bba_K1155004, Bba_K1155005, Bba_K1155006====
+
====1 - Electrophoresis to check the PCR Colonies products : BBa_K1155004, BBa_K1155005, BBa_K1155006====
XiaoJing, Damir, Anaïs
XiaoJing, Damir, Anaïs
-
* Bba_K1155004 :
+
* BBa_K1155004 :
{|
{|
-
| style="width:350px;border:1px solid black;" |[[]]
+
| style="width:350px;border:1px solid black;" |[[File:Psgel10608.jpg| 400px]][[File:Psgel20608.jpg| 400px]]
| style="width:350px;border:1px solid black;vertical-align:top;" |
| style="width:350px;border:1px solid black;vertical-align:top;" |
* Well 1 : 6µL DNA Ladder
* Well 1 : 6µL DNA Ladder
-
* Well 2 to 7 : 10µL Bba_K1155004+2µl of 6X loading dye
+
* Well 2 to 7 : 10µL BBa_K1155004 + 2µl of 6X loading dye
* Well 8 : 6µL DNA Ladder
* Well 8 : 6µL DNA Ladder
-
* Well 9 to 14 : 10µL Bba_K1155004+2µl of 6X loading dye
+
* Well 9 to 15 : 10µL BBa_K1155004 + 2µl of 6X loading dye
-
* Well 15 : 6µL DNA Ladder
+
* Well 16 : 6µL DNA Ladder
* Well 16 : 6µL DNA Ladder
-
* Well 17 to 22 : 10µL Bba_K1155004+2µl of 6X loading dye
+
 
-
* Well 23 : 6µL DNA Ladder
+
 
-
* Well 24 to 30 : 10µL Bba_K1155004+2µl of 6X loading dye
+
* Well 1 : 6µL DNA Ladder
-
* Well 31 : 6µL DNA Ladder
+
* Well 2 to 7 : 10µL BBa_K1155004 + 2µl of 6X loading dye
 +
* Well 8 : 6µL DNA Ladder
 +
* Well 9 to 14 : 10µL BBa_K1155004 + 2µl of 6X loading dye
 +
* Well 15 : 6µL DNA Ladder
* Gel : 1%
* Gel : 1%
|}
|}
-
*Bba_K1155005 :
+
*BBa_K1155005 :
{|
{|
-
| style="width:350px;border:1px solid black;" |[[]]
+
| style="width:350px;border:1px solid black;" |[[File:Psgel30608.jpg| 400px]][[File:Psgel40608.jpg| 400px]]
| style="width:350px;border:1px solid black;vertical-align:top;" |
| style="width:350px;border:1px solid black;vertical-align:top;" |
* Well 1 : 6µL DNA Ladder
* Well 1 : 6µL DNA Ladder
-
* Well 2 to 7 : 10µL Bba_K1155005+2µl of 6X loading dye
+
* Well 2 to 7 : 10µL BBa_K1155005 + 2µl of 6X loading dye
* Well 8 : 6µL DNA Ladder
* Well 8 : 6µL DNA Ladder
-
* Well 9 to 14 : 10µL Bba_K1155005+2µl of 6X loading dye
+
* Well 9 to 14 : 10µL BBa_K1155005 + 2µl of 6X loading dye
* Well 15 : 6µL DNA Ladder
* Well 15 : 6µL DNA Ladder
 +
 +
 +
* Well 1 : 6µL DNA Ladder
 +
* Well 2 to 7 : 10µL BBa_K1155005 + 2µl of 6X loading dye
 +
* Well 8 : 6µL DNA Ladder
 +
* Well 9 to 15 : 10µL BBa_K1155005 + 2µl of 6X loading dye
* Well 16 : 6µL DNA Ladder
* Well 16 : 6µL DNA Ladder
-
* Well 17 to 22 : 10µL Bba_K1155005+2µl of 6X loading dye
 
-
* Well 23 : 6µL DNA Ladder
 
-
* Well 24 to 30 : 10µL Bba_K1155005+2µl of 6X loading dye
 
-
* Well 31 : 6µL DNA Ladder
 
* Gel : 1%
* Gel : 1%
|}
|}
-
*Bba_K1155006 :
+
*BBa_K1155006 :
{|
{|
-
| style="width:350px;border:1px solid black;" |[[]]
+
| style="width:350px;border:1px solid black;" |[[File:Psgel50608.jpg| 400px]]
| style="width:350px;border:1px solid black;vertical-align:top;" |
| style="width:350px;border:1px solid black;vertical-align:top;" |
-
* Well 1 to 12 : 10µL Bba_K1155006+2µl of 6X loading dye  
+
* Well 1 to 12 : 10µL BBa_K1155006+2µl of 6X loading dye  
* Well 13 : 6µL DNA Ladder
* Well 13 : 6µL DNA Ladder
-
* Well 14 to 26 : 10µL Bba_K1155006+2µl of 6X loading dye  
+
* Well 14 to 26 : 10µL BBa_K1155006+2µl of 6X loading dye  
* Gel : 1%
* Gel : 1%
|}
|}
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{|
{|
| style="border:1px solid black;padding:5px;background-color:#DEDEDE;" |
| style="border:1px solid black;padding:5px;background-color:#DEDEDE;" |
-
We obtain fragments at the good size for all the colony. ENSUITE ?????????
+
We obtained fragments of the good size for all the colonies. We will make a culture for DH5α strain containing BBa_K1155004, BBa_K1155005 and BBa_K1155006. We will also sequence our plasmids.
|}
|}
-
====2 - Samples culture====
+
====2 - Liquid culture of DH5αstrain containing BBa_K1155004, BBa_K1155005 and BBa_K1155006 ====
 +
 
Xiaoing, Anaïs
Xiaoing, Anaïs
-
We put in culture the 6, 7, 8 samples for every promoter in 5 ml LB + 5 µl Chlorenphenicol (1000x,20µg/ml)
+
Used quantities :
-
Incubator over night to 310,15K at 180 RPM
+
* LB : 5mL
 +
* Chloramphenicol (1000X, 20µg/mL) : 5µL
 +
* Strain containing BBa_K1155004, BBa_K1155005 and BBa_K1155006 : 25µL
-
==='''B - PCB sensing system'''===
+
We incubate the cultures over night at 37°C with  agigation at 180 RPM.
-
===='''Obtaining the BphA1 promoter'''====
+
We picked colonies number 6, 7 and 8 for each promoter.
-
====1 - Sequence analysis for BB pBphA1 in psB1C3 5 ( clone 4, 17 and 22 )====
+
===='''Objective : obtaining BBa_K1155007'''====
-
IMAGE
+
====1 - Electroelution of BBa_I732017 digested by EcoRI/SpeI====
-
==='''A - Aerobic/Anaerobic regulation system / B - PCB sensing system'''===
+
Nadia
-
====1 - PCR product( made the 08/01/2013)digestion to degrade the backbone psB1C3====
+
Protocol : [[Team:Paris_Saclay/electro|Electroelution]]
 +
{|
 +
| style="border:1px solid black;padding:5px;background-color:#DEDEDE;" |
 +
The electroelution was good. We will ligate RBS-LacZ with Term and pSB1C3.
 +
|}
 +
===='''Objective : obtaining biobricks in pSB3K3'''====
 +
====1 - Extraction of BBa_J04450 from DH5α====
 +
Abdou
 +
Protocol : [[Team:Paris_Saclay/extraction|Low copy plamid extraction]]
 +
==='''B - PCB sensing system'''===
 +
 +
===='''Objective : obtaining BBa_K1155002'''====
 +
 +
====1 - Sequence analysis for BBa_K1155002 in clones 4, 17 and 22====
 +
 +
{|
 +
| style="border:1px solid black;padding:5px;background-color:#DEDEDE;" |
 +
The sequence is good for each clone. We obtain a new biobrick : BBa_K1155002.
 +
|}
 +
 +
 +
{| border="1" align="center"
 +
|[[Team:Paris Saclay/Notebook/August/5|<big>Previous day</big>]]
 +
 +
|[[Team:Paris_Saclay/Notebook|<big>Back to calendar</big>]]
 +
 +
|[[Team:Paris Saclay/Notebook/August/7|<big>Next day</big>]]
 +
|}
{{Team:Paris_Saclay/incl_fin}}
{{Team:Paris_Saclay/incl_fin}}

Latest revision as of 01:25, 5 October 2013

Navigation Home Team Project Labwork Notebook Human practices

Contents

Notebook : August 6

Lab work

A - Aerobic/Anaerobic regulation system

Objective : obtaining BBa_K1155004, BBa_K1155005, BBa_K1155006

1 - Electrophoresis to check the PCR Colonies products : BBa_K1155004, BBa_K1155005, BBa_K1155006

XiaoJing, Damir, Anaïs

  • BBa_K1155004 :
Psgel10608.jpgPsgel20608.jpg
  • Well 1 : 6µL DNA Ladder
  • Well 2 to 7 : 10µL BBa_K1155004 + 2µl of 6X loading dye
  • Well 8 : 6µL DNA Ladder
  • Well 9 to 15 : 10µL BBa_K1155004 + 2µl of 6X loading dye
  • Well 16 : 6µL DNA Ladder


  • Well 1 : 6µL DNA Ladder
  • Well 2 to 7 : 10µL BBa_K1155004 + 2µl of 6X loading dye
  • Well 8 : 6µL DNA Ladder
  • Well 9 to 14 : 10µL BBa_K1155004 + 2µl of 6X loading dye
  • Well 15 : 6µL DNA Ladder
  • Gel : 1%
  • BBa_K1155005 :
Psgel30608.jpgPsgel40608.jpg
  • Well 1 : 6µL DNA Ladder
  • Well 2 to 7 : 10µL BBa_K1155005 + 2µl of 6X loading dye
  • Well 8 : 6µL DNA Ladder
  • Well 9 to 14 : 10µL BBa_K1155005 + 2µl of 6X loading dye
  • Well 15 : 6µL DNA Ladder


  • Well 1 : 6µL DNA Ladder
  • Well 2 to 7 : 10µL BBa_K1155005 + 2µl of 6X loading dye
  • Well 8 : 6µL DNA Ladder
  • Well 9 to 15 : 10µL BBa_K1155005 + 2µl of 6X loading dye
  • Well 16 : 6µL DNA Ladder
  • Gel : 1%
  • BBa_K1155006 :
Psgel50608.jpg
  • Well 1 to 12 : 10µL BBa_K1155006+2µl of 6X loading dye
  • Well 13 : 6µL DNA Ladder
  • Well 14 to 26 : 10µL BBa_K1155006+2µl of 6X loading dye
  • Gel : 1%

Expected size :

  • NarK, NarG, NirB : 500 bp

We obtained fragments of the good size for all the colonies. We will make a culture for DH5α strain containing BBa_K1155004, BBa_K1155005 and BBa_K1155006. We will also sequence our plasmids.

2 - Liquid culture of DH5αstrain containing BBa_K1155004, BBa_K1155005 and BBa_K1155006

Xiaoing, Anaïs

Used quantities :

  • LB : 5mL
  • Chloramphenicol (1000X, 20µg/mL) : 5µL
  • Strain containing BBa_K1155004, BBa_K1155005 and BBa_K1155006 : 25µL

We incubate the cultures over night at 37°C with agigation at 180 RPM.

We picked colonies number 6, 7 and 8 for each promoter.

Objective : obtaining BBa_K1155007

1 - Electroelution of BBa_I732017 digested by EcoRI/SpeI

Nadia

Protocol : Electroelution

The electroelution was good. We will ligate RBS-LacZ with Term and pSB1C3.

Objective : obtaining biobricks in pSB3K3

1 - Extraction of BBa_J04450 from DH5α

Abdou

Protocol : Low copy plamid extraction

B - PCB sensing system

Objective : obtaining BBa_K1155002

1 - Sequence analysis for BBa_K1155002 in clones 4, 17 and 22

The sequence is good for each clone. We obtain a new biobrick : BBa_K1155002.


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