Team:Duke/Modeling/Codes

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== Codes ==  
== Codes ==  
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'[https://2013.igem.org/Team:Duke/Modeling/Codes_Thermo1 P_bound vs. Number of Binding Sites (MATLAB)].
 
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'[https://2013.igem.org/Team:Duke/Modeling/Codes_Thermo2 P_bound vs. Binding Strengths (MATLAB)].
 
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Thermodynamic Model
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#[https://2013.igem.org/Team:Duke/Modeling/Codes/Thermo1 P_bound vs. Number of Binding Sites (MATLAB)]. <br>
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#[https://2013.igem.org/Team:Duke/Modeling/Codes/Thermo2 P_bound vs. Binding Strengths (MATLAB)].
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<br><br>
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Kinetic Model
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#[https://2013.igem.org/Team:Duke/Modeling/Codes/Kinetic1 Bifurcation Region for Different Promoter Strengths (Mathematica)].<br>
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#[https://2013.igem.org/Team:Duke/Modeling/Codes/Kinetic2 Bifurcation Region for Different Binding Strengths (Mathematica)].<br>
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#[https://2013.igem.org/Team:Duke/Modeling/Codes/Kinetic3 Bifurcation Region for Different Leakiness (Mathematica)].<br>
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<br><br><br>
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<br>
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==Navigate==
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====Modeling Pages====
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#[https://2013.igem.org/Team:Duke/Modeling/Cooperativity '''Cooperativity and Hill Equation''']
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#[https://2013.igem.org/Team:Duke/Modeling/Thermodynamic_Model_Intro '''Thermodynamic Model: Introduction''']
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#[https://2013.igem.org/Team:Duke/Modeling/Thermodynamic_Model_Application '''Thermodynamic Model: Application''']
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#[https://2013.igem.org/Team:Duke/Modeling/Kinetic_Model '''Kinetic Model''']
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====Supplementary Materials====
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#[https://2013.igem.org/Team:Duke/Modeling/Thermo_Derivation '''Derivation of the Thermodynamic Model''']
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#MATLAB/Mathematica Codes Used (You are here)
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<br><br>
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Latest revision as of 04:59, 24 September 2013

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Contents

Mathematical Modeling of Bistable Toggle Switch

Codes

Thermodynamic Model

  1. P_bound vs. Number of Binding Sites (MATLAB).
  2. P_bound vs. Binding Strengths (MATLAB).



Kinetic Model

  1. Bifurcation Region for Different Promoter Strengths (Mathematica).
  2. Bifurcation Region for Different Binding Strengths (Mathematica).
  3. Bifurcation Region for Different Leakiness (Mathematica).


Navigate

Modeling Pages

  1. Cooperativity and Hill Equation
  2. Thermodynamic Model: Introduction
  3. Thermodynamic Model: Application
  4. Kinetic Model

Supplementary Materials

  1. Derivation of the Thermodynamic Model
  2. MATLAB/Mathematica Codes Used (You are here)





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