Team:Uppsala/attribution

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<div id="igem"><a href="https://2013.igem.org/Main_Page"><img class="igem" src="https://static.igem.org/mediawiki/2013/b/b8/Uppsala2013_Uppsala_IGEM_log_blue.png"></a></div>
<div id="igem"><a href="https://2013.igem.org/Main_Page"><img class="igem" src="https://static.igem.org/mediawiki/2013/b/b8/Uppsala2013_Uppsala_IGEM_log_blue.png"></a></div>
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                                                 <li><a href="https://2013.igem.org/Team:Uppsala/metabolic-engineering">Metabolic engineering</a>
                                                 <li><a href="https://2013.igem.org/Team:Uppsala/metabolic-engineering">Metabolic engineering</a>
                                                     <ul>
                                                     <ul>
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                                                                 <li><a href="https://2013.igem.org/Team:Uppsala/p-coumaric-acid">P-coumaric acid</a></li>
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                                                                 <li><a href="https://2013.igem.org/Team:Uppsala/p-coumaric-acid">p-Coumaric acid</a></li>
                                                                 <li><a href="https://2013.igem.org/Team:Uppsala/resveratrol">Resveratrol</a></li>
                                                                 <li><a href="https://2013.igem.org/Team:Uppsala/resveratrol">Resveratrol</a></li>
<li><a href="https://2013.igem.org/Team:Uppsala/lycopene">Lycopene</a></li>
<li><a href="https://2013.igem.org/Team:Uppsala/lycopene">Lycopene</a></li>
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<li><a href="https://2013.igem.org/Team:Uppsala/modeling" id="list_type1"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/6/63/Uppsala2013_Modeling.png"></a>
<li><a href="https://2013.igem.org/Team:Uppsala/modeling" id="list_type1"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/6/63/Uppsala2013_Modeling.png"></a>
<ul>
<ul>
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<li><a href="https://2013.igem.org/Team:Uppsala/P-Coumaric-acid-pathway">P-Coumaric acid</a></li>
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<li><a href="https://2013.igem.org/Team:Uppsala/P-Coumaric-acid-pathway">Kinetic model</a></li>
<li><a href="https://2013.igem.org/Team:Uppsala/modeling-tutorial">Modeling tutorial </a></li>
<li><a href="https://2013.igem.org/Team:Uppsala/modeling-tutorial">Modeling tutorial </a></li>
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<li><a href="https://2013.igem.org/Team:Uppsala/toxicity-model">Toxicity model</a></li>
</ul></li>
</ul></li>
<li><a href="https://2013.igem.org/Team:Uppsala/parts" id="list_type2"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/e/eb/Uppsala2013_parts.png"></a></li>
<li><a href="https://2013.igem.org/Team:Uppsala/parts" id="list_type2"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/e/eb/Uppsala2013_parts.png"></a></li>
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<li><a href="https://2013.igem.org/Team:Uppsala/carotenoid-group">Carotenoid group</a></li>
<li><a href="https://2013.igem.org/Team:Uppsala/carotenoid-group">Carotenoid group</a></li>
<li><a href="https://2013.igem.org/Team:Uppsala/chassi-group">Chassi group</a></li>
<li><a href="https://2013.igem.org/Team:Uppsala/chassi-group">Chassi group</a></li>
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                                                <li><a href="https://2013.igem.org/Team:Uppsala/advisors">Advisors</a></li>
</ul></li>
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<li><a href="https://2013.igem.org/Team:Uppsala/public-opinion">Public opinion </a></li>
<li><a href="https://2013.igem.org/Team:Uppsala/public-opinion">Public opinion </a></li>
                                                 <li><a href="https://2013.igem.org/Team:Uppsala/Outreach">High school & media </a></li>
                                                 <li><a href="https://2013.igem.org/Team:Uppsala/Outreach">High school & media </a></li>
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<li><a href="https://2013.igem.org/Team:Uppsala/bioart">BioArt</a></li>
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<li><a href="https://2013.igem.org/Team:Uppsala/LactonutritiousWorld">A LactoWorld</a></li>
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<li><a href="https://2013.igem.org/Team:Uppsala/killswitches">Killswitches</a></li>
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<li><a href="https://2013.igem.org/Team:Uppsala/realization">Patent</a></li>
</ul></li>
</ul></li>
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<li><a href="https://2013.igem.org/Team:Uppsala/attribution" id="list_type4"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/5/5d/Uppsala2013_Attributions.png"></a>
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<li><a href="https://2013.igem.org/Team:Uppsala/attribution" id="list_type4"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/5/5d/Uppsala2013_Attributions.png"></a></li>  
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                                <ul>
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                                    <li><a href="https://2013.igem.org/Team:Uppsala/collaboration">Collaboration</a></li>
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                                </ul></li>  
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<li><a href="https://2013.igem.org/Team:Uppsala/notebook" id="list_type3"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/3/36/Uppsala2013_Notebook.png"></a>
<li><a href="https://2013.igem.org/Team:Uppsala/notebook" id="list_type3"><img class="nav-text" src="https://static.igem.org/mediawiki/2013/3/36/Uppsala2013_Notebook.png"></a>
                                     <ul>
                                     <ul>
                                         <li><a href="https://2013.igem.org/Team:Uppsala/safety-form">Safety form</a></li>
                                         <li><a href="https://2013.igem.org/Team:Uppsala/safety-form">Safety form</a></li>
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                                        <li><a href="https://2013.igem.org/Team:Uppsala/protocols">Protocols</a></li>
                                     </ul></li>
                                     </ul></li>
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<h1>Supervisors</h1>
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      <h1 class="main-title">Collaboration</h1>
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All of the work that was done during this project was both planned and executed by our iGEM team members. It all started of with some brainstorming sessions that began in the middle of May, although the actual lab work began in the beginning of June.
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<br>
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<img class="pic" src="https://static.igem.org/mediawiki/2013/4/4c/Uppsala2013_virtanen.jpg">
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During the summer we have worked very closely with the <a href="https://2013.igem.org/Team:Linkoping_Sweden"> Linköpings iGEM team 2013 </a>. Since it was their first year to participate in the competition we decided to do our best to provide them with any assistance they needed, such as providing them with parts, knowledge etc.
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<div id="text-box1">
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<br>
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<h1>Anders Virtanen</h1>
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<br>
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<p>Anders Virtanen is a professor at the Department of Cell and Molecular Biology and the director of the Uppsala RNA Research Centre (URRC). Anders studies primarily enzymes involved in regulating fate and function of the pletora of RNA molecules in the cell. Another goal is to develop novel antibiotics targeting RNA molecules.</p>
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In addition to assisting Linköpings iGEM team we have also sent biobricks to the following iGEM teams:
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<br>
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<br>
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<img class="pic" src="https://static.igem.org/mediawiki/2013/5/5c/Uppsala2013_Anthony.jpg">
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iGEM 2013 <a href="https://2013.igem.org/Team:UT-Tokyo"> UT-Tokyo: </a> <br>
 +
<a href="http://parts.igem.org/Part:BBa_K592010"> BBa_K592010 </a> - amilGFP, yellow chromoprotein <br>
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<a href="http://parts.igem.org/Part:BBa_K864401">  BBa_K864401 </a> - aeBlue, blue chromoprotein <br>
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<div id="text-box1">
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<br>
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<h1>Anthony Forster</h1>
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<p>Anthony Forster is a professor at the Department of Cell and Molecular Biology and a member of the Uppsala RNA Research Centre (URRC). He is researching synthetic biology, protein synthesis and drug discovery, and is currently working towards the synthesis of a minimal cell.</p>
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</div>
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</div>
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iGEM 2013 <a href="https://2013.igem.org/Team:Braunschweig"> Braunschweig: </a> <br>
 +
<a href="http://parts.igem.org/Part:BBa_K1033930">BBa_K1033930</a> - amilCP, blue/purple chromoprotein (incl RBS) <br>
 +
<a href="http://parts.igem.org/Part:BBa_K592010"> BBa_K592010 </a> - amilGFP, yellow chromoprotein <br>
 +
<a href="http://parts.igem.org/Part:BBa_K592012"> BBa_K592012 </a> - eforRed, red/pink chromoprotein <br>
 +
<a href="http://parts.igem.org/Part:BBa_K592011"> BBa_K592011 </a> - cjBlue, green chromoprotein<br>
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<a href="http://parts.igem.org/Part:BBa_K864401">  BBa_K864401 </a> - aeBlue, blue chromoprotein <br>
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</div>
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<br>
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        <div id="clear"></div>
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iGEM 2013 <a href="https://2013.igem.org/Team:Tsinghua"> Tsinghua: </a>  <br>
 +
<a href="http://parts.igem.org/Part:BBa_K592010"> BBa_K592010 </a> - amilGFP, yellow chromoprotein <br>
 +
<a href="http://parts.igem.org/Part:BBa_K592012"> BBa_K592012 </a> - eforRed, red/pink chromoprotein <br>
 +
<a href="http://parts.igem.org/Part:BBa_K592011"> BBa_K592011 </a> - cjBlue, green chromoprotein<br>
 +
<a href="http://parts.igem.org/Part:BBa_K864401">  BBa_K864401 </a> - aeBlue, blue chromoprotein <br>
 +
<a href="http://parts.igem.org/Part:BBa_K1033930">BBa_K1033930</a> - amilCP, blue/purple chromoprotein (incl RBS) <br>
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<h1>Instructors</h1>
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<br>
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iGEM 2013 <a href="https://2013.igem.org/Team:CU-Boulder"> CU Boulder: </a> <br>
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<a href="http://parts.igem.org/Part:BBa_K592010"> BBa_K592010 </a> - amilGFP, yellow chromoprotein <br>
 +
<a href="http://parts.igem.org/Part:BBa_K592012"> BBa_K592012 </a> - eforRed, red/pink chromoprotein <br>
 +
<a href="http://parts.igem.org/Part:BBa_K592011"> BBa_K592011 </a> - cjBlue, green chromoprotein<br>
 +
<a href="http://parts.igem.org/Part:BBa_K864401">  BBa_K864401 </a> - aeBlue, blue chromoprotein <br>
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<a href="http://parts.igem.org/Part:BBa_K1033930">BBa_K1033930</a> - amilCP, blue/purple chromoprotein (incl RBS) <br>
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<div id="left">
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<br>
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<img class="pic" src="https://static.igem.org/mediawiki/2013/0/07/Uppsala2013_Mikael.jpg">
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iGEM 2013 <a href="https://2013.igem.org/Team:uOttawa"> uOttawa: </a>  <br>
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<a href="http://parts.igem.org/Part:BBa_K592010"> BBa_K592010 </a> - amilGFP, yellow chromoprotein <br>
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<a href="http://parts.igem.org/Part:BBa_K592012"> BBa_K592012 </a> - eforRed, red/pink chromoprotein <br>
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<div id="text-box">
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<br>
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<h1>Mikael Nissbeck</h1>
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<p>PhD student at Uppsala RNA Research Center (URRC), Department of Cell and Molecular biology, at Uppsala University since 2012 and is currently working on the human enzyme Poly(A)-specific ribonuclease (PARN) in the Anders Virtanen group at the Uppsala Biomedical Center.</p>
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</div>
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<div id="right">
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iGEM 2013 <a href="https://2013.igem.org/Team:HokkaidoU_Japan"> HokkaidoU: </a> <br>
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<a href="http://parts.igem.org/Part:BBa_K592009"> BBa_K592009 </a> - amilCP, blue chromoprotein (incl RBS) <br>
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<a href="http://parts.igem.org/Part:BBa_K1033931">BBa_K1033931</a> - amilGFP, yellow chromoprotein (incl RBS) <br>
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<a href="http://parts.igem.org/Part:BBa_K592010"> BBa_K592010 </a> - amilGFP, yellow chromoprotein <br>
 +
<a href="http://parts.igem.org/Part:BBa_K592012"> BBa_K592012 </a> - eforRed, red/pink chromoprotein <br>
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<a href="http://parts.igem.org/Part:BBa_K592011"> BBa_K592011 </a> - cjBlue, green chromoprotein<br>
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<a href="http://parts.igem.org/Part:BBa_K864401">  BBa_K864401 </a> - aeBlue, blue chromoprotein <br>
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<img class="pic" src="https://static.igem.org/mediawiki/2013/c/c9/Uppsala2013_abisheck.jpg">
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<br>
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<div id="text-box">
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iGEM 2013 <a href="https://2013.igem.org/Team:TU_Darmstadt"> TU Darmstadt: </a>  <br>
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<h1>Abhishek Shanker Srivastava </h1>
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<a href="http://parts.igem.org/Part:BBa_K592012"> BBa_K592012 </a> - eforRed, red/pink chromoprotein <br>
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<p>Postdoc at Chemical Biology Group, Department of Cell
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<a href="http://parts.igem.org/Part:BBa_K592011"> BBa_K592011 </a> - cjBlue, green chromoprotein<br>
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and Molecular biology, at Uppsala University since 2012 and is
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<a href="http://parts.igem.org/Part:BBa_K1033929">BBa_K1033929</a> - aeBlue, blue chromoprotein (incl RBS) <br>
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currently working on ribonuclease P in Leif Kirsebom group at the
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<a href="http://parts.igem.org/Part:BBa_K1033928">BBa_K1033928</a> - aeBlue, blue chromoprotein (incl RBS, J23110) <br>
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Uppsala Biomedical Center.</p>
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<a href="http://parts.igem.org/Part:BBa_K1033903"> BBa_K1033903 </a> - tsPurple, purple chromoprotein (incl RBS, J23110) <br>
-
</div>
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<a href="http://parts.igem.org/Part:BBa_K1033930">BBa_K1033930</a> - amilCP, blue/purple chromoprotein (incl RBS) <br>
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</div>
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<a href="http://parts.igem.org/Part:BBa_K1033931">BBa_K1033931</a> - amilGFP, yellow chromoprotein (incl RBS) <br>
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<br>
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</div>
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<h1> A special thanks </h1>
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We would also like to thank other sources that have helped us, such as the <a href="https://2010.igem.org/Team:Slovenia"> Slovenian iGEM team 2010 </a> that supplied us with the genes needed for the production of carotenoid metabolites, <a href="https://2012.igem.org/Team:TU_Munich"> TU-Munichs iGEM team 2012 </a> that provided us with the gene 4CL for the production of 4-coumaryl-CoA, and <a href= "https://2012.igem.org/Team:WashU"> Wahington University's 2012 iGEM team WashU </a> that enabled our work with the saffron pathway. Last but not least we would also like to thank the School of chemical and Biomolecular Engineering, Cornell University for providing us with the genes involved in the production of the phenylpropanoid pathway. The article can be found at; <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3287197/pdf/gkr888.pdf"> Conrado RJ, Mori J et al (2011) </a>
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<img class="pic" src="https://static.igem.org/mediawiki/2013/7/7e/Anders_port.jpg">
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<h1> Other collaborations </h1>
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<div id="text-box">
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In addition to this we would also like to mention some fascinating requests that have been made by external sources:
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<h1>Stefan Roos</h1>
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<ul>
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<p>Stefan Roos is an associate professor at the Department of Microbiology at Swedish University of Agricultural Sciences in Uppsala. Stefan works with genomics, physiology and ecology of probiotic lactobacilli. The primary goals are to understand how those bacteria interact with their host and to design probiotic products with improved activity.</p>
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<li> Nature reviews request to display our chromoproteins on their <a href="http://www.nature.com/nrmicro/journal/v11/n10/covers/index.html"> front page </a> for their 10 year anniversary. </li>
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</div>
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<li>National Aeronautics and Space Administrations (NASA) biotechnology department requested our chromoproteins as reporter genes for a project that is currently being worked on. </li>
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</div>
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</ul>
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<img class="pic" src="https://static.igem.org/mediawiki/2013/0/02/Uppsala2013_sethu.jpg">
 
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<h1>Sethu Madhava Rao Gunja</h1>
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<p>Research Assistant at Chemical Biology group, Department of Cell and Molecular Biology in Uppsala University since 2012 and is currently working on Physiological characterisation of human enzyme Poly(A)-specific ribonuclease (PARN) in the Anders Virtanen group at the Uppsala Biomedical Center.</p>
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<h1>Erik Gullberg</h1>
 
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<p>PhD student in Medical Bacteriology at the Department of Medical Biochemistry and Microbiology at Uppsala University since 2009 and is currently working on antibiotic resistance in bacteria in the Dan Andersson group at the Uppsala Biomedical Center. So far he has published articles in PLoS Pathogens and Molecular Microbiology.</p>
 
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<h1>Erik Lundin</h1>
 
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<p>PhD student in Medical Bacteriology at the Department of Medical Biochemistry and Microbiology at Uppsala University since 2013. Erik Lundin is currently working on bacterial evolution where he studies how genes evolve and how they gain new functions because of this. Erik works in Dan Andersson group at the Uppsala Biomedical Center. </p>
 
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Latest revision as of 20:01, 27 October 2013

Collaboration

All of the work that was done during this project was both planned and executed by our iGEM team members. It all started of with some brainstorming sessions that began in the middle of May, although the actual lab work began in the beginning of June.

During the summer we have worked very closely with the Linköpings iGEM team 2013 . Since it was their first year to participate in the competition we decided to do our best to provide them with any assistance they needed, such as providing them with parts, knowledge etc.

In addition to assisting Linköpings iGEM team we have also sent biobricks to the following iGEM teams:

iGEM 2013 UT-Tokyo:
BBa_K592010 - amilGFP, yellow chromoprotein
BBa_K864401 - aeBlue, blue chromoprotein

iGEM 2013 Braunschweig:
BBa_K1033930 - amilCP, blue/purple chromoprotein (incl RBS)
BBa_K592010 - amilGFP, yellow chromoprotein
BBa_K592012 - eforRed, red/pink chromoprotein
BBa_K592011 - cjBlue, green chromoprotein
BBa_K864401 - aeBlue, blue chromoprotein

iGEM 2013 Tsinghua:
BBa_K592010 - amilGFP, yellow chromoprotein
BBa_K592012 - eforRed, red/pink chromoprotein
BBa_K592011 - cjBlue, green chromoprotein
BBa_K864401 - aeBlue, blue chromoprotein
BBa_K1033930 - amilCP, blue/purple chromoprotein (incl RBS)

iGEM 2013 CU Boulder:
BBa_K592010 - amilGFP, yellow chromoprotein
BBa_K592012 - eforRed, red/pink chromoprotein
BBa_K592011 - cjBlue, green chromoprotein
BBa_K864401 - aeBlue, blue chromoprotein
BBa_K1033930 - amilCP, blue/purple chromoprotein (incl RBS)

iGEM 2013 uOttawa:
BBa_K592010 - amilGFP, yellow chromoprotein
BBa_K592012 - eforRed, red/pink chromoprotein

iGEM 2013 HokkaidoU:
BBa_K592009 - amilCP, blue chromoprotein (incl RBS)
BBa_K1033931 - amilGFP, yellow chromoprotein (incl RBS)
BBa_K592010 - amilGFP, yellow chromoprotein
BBa_K592012 - eforRed, red/pink chromoprotein
BBa_K592011 - cjBlue, green chromoprotein
BBa_K864401 - aeBlue, blue chromoprotein

iGEM 2013 TU Darmstadt:
BBa_K592012 - eforRed, red/pink chromoprotein
BBa_K592011 - cjBlue, green chromoprotein
BBa_K1033929 - aeBlue, blue chromoprotein (incl RBS)
BBa_K1033928 - aeBlue, blue chromoprotein (incl RBS, J23110)
BBa_K1033903 - tsPurple, purple chromoprotein (incl RBS, J23110)
BBa_K1033930 - amilCP, blue/purple chromoprotein (incl RBS)
BBa_K1033931 - amilGFP, yellow chromoprotein (incl RBS)

A special thanks

We would also like to thank other sources that have helped us, such as the Slovenian iGEM team 2010 that supplied us with the genes needed for the production of carotenoid metabolites, TU-Munichs iGEM team 2012 that provided us with the gene 4CL for the production of 4-coumaryl-CoA, and Wahington University's 2012 iGEM team WashU that enabled our work with the saffron pathway. Last but not least we would also like to thank the School of chemical and Biomolecular Engineering, Cornell University for providing us with the genes involved in the production of the phenylpropanoid pathway. The article can be found at; Conrado RJ, Mori J et al (2011)

Other collaborations

In addition to this we would also like to mention some fascinating requests that have been made by external sources:
  • Nature reviews request to display our chromoproteins on their front page for their 10 year anniversary.
  • National Aeronautics and Space Administrations (NASA) biotechnology department requested our chromoproteins as reporter genes for a project that is currently being worked on.

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