Team:TU-Munich/Project/Physcomitrella

From 2013.igem.org

(Difference between revisions)
(Physcomitrella - A model organism for Bryophytes)
(Physcomitrella - A model organism for Bryophytes)
Line 11: Line 11:
[[File:TUM13 Physco-lifecycle.png|thumb|right|350px| Figure 3:]]
[[File:TUM13 Physco-lifecycle.png|thumb|right|350px| Figure 3:]]
Description on Physcomitrella patens
Description on Physcomitrella patens
 +
<br><br><br><br><br><br><br><br><br><br><br><br><br><br>
</div>
</div>

Revision as of 13:50, 14 July 2013


Physcomitrella - A model organism for Bryophytes

Figure 3:

Description on Physcomitrella patens















A new chassis for iGEM, including several advantages

Text
Text
figure




Working with Physcomitrella

Text
Text
figure



Transformation, Genome Integration and Selection

Text
Text
figure



BioBricks for Proteinexpression in Physcomitrella

Text
Text
figure





A synthetic receptor for the Moss

Text

SERK: The Template from P. patens

Text
figure

The Blueprint for our Synthetic Moss Receptor

Text
figure



References:

http://www.ncbi.nlm.nih.gov/pubmed/6327079 Edens et al., 1984

  1. http://www.ncbi.nlm.nih.gov/pubmed/6327079 Edens et al., 1984 Edens, L., Bom, I., Ledeboer, A. M., Maat, J., Toonen, M. Y., Visser, C., and Verrips, C. T. (1984). Synthesis and processing of the plant protein thaumatin in yeast. Cell, 37(2):629–33.



$(document).ready(function(){


// put the footer in the right place

$("#footer-box").prepend($("#social-footer"));


// implement image preloading

var images = new Array()

function preload() {

   for (i = 0; i < preload.arguments.length; i++) {
       images[i] = new Image()
       images[i].src = preload.arguments[i]
   }

}


// preload menu backgrounds

preload( "TUM13_menu-highlight.png",

        "TUM13_submenu-bg.png",
        "TUM13_submenu-highlight.png",
        "TUM13_tour-start-highlight.png",
        "TUM13_tour-previous-highlight.png",
        "TUM13_tour-next-highlight.png" );

// preload team pictures

if ( $("div#teamfield").length > 0 ) { preload( "TUM13_raven-front.png",

        "TUM13_raven-top.png",
        "TUM13_raven-top-left.png",
        "TUM13_raven-left.png",
        "TUM13_raven-bottom-left.png",
        "TUM13_raven-bottom.png",
        "TUM13_raven-bottom-right.png",
        "TUM13_raven-right.png",
        "TUM13_raven-top-right.png",
        "TUM13_katrin-front.png",        // Katrin
        "TUM13_katrin-t.png",
        "TUM13_katrin-t-l.png",
        "TUM13_katrin-l.png",
        "TUM13_katrin-b-l.png",
        "TUM13_katrin-b.png",
        "TUM13_katrin-b-r.png",
        "TUM13_katrin-r.png",
        "TUM13_katrin-t-r.png",
        "TUM13_rosario-front.png",        // Rosario
        "TUM13_rosario-t.png",
        "TUM13_rosario-t-l.png",
        "TUM13_rosario-l.png",
        "TUM13_rosario-b-l.png",
        "TUM13_rosario-b.png",
        "TUM13_rosario-b-r.png",
        "TUM13_rosario-r.png",
        "TUM13_rosario-t-r.png",
        "TUM13_fabian-front.png",        // Fabian
        "TUM13_fabian-t.png",
        "TUM13_fabian-t-l.png",
        "TUM13_fabian-l.png",
        "TUM13_fabian-b-l.png",
        "TUM13_fabian-b.png",
        "TUM13_fabian-b-r.png",
        "TUM13_fabian-r.png",
        "TUM13_fabian-t-r.png",
        "TUM13_andreas-front.png",        // Andreas
        "TUM13_andreas-t.png",
        "TUM13_andreas-t-l.png",
        "TUM13_andreas-l.png",
        "TUM13_andreas-b-l.png",
        "TUM13_andreas-b.png",
        "TUM13_andreas-b-r.png",
        "TUM13_andreas-r.png",
        "TUM13_andreas-t-r.png",
        "TUM13_louise-front.png",        // Louise
        "TUM13_louise-t.png",
        "TUM13_louise-t-l.png",
        "TUM13_louise-l.png",
        "TUM13_louise-b-l.png",
        "TUM13_louise-b.png",
        "TUM13_louise-b-r.png",
        "TUM13_louise-r.png",
        "TUM13_louise-t-r.png",
        "TUM13_johanna-front.png",        // Johanna
        "TUM13_johanna-t.png",
        "TUM13_johanna-t-l.png",
        "TUM13_johanna-l.png",
        "TUM13_johanna-b-l.png",
        "TUM13_johanna-b.png",
        "TUM13_johanna-b-r.png",
        "TUM13_johanna-r.png",
        "TUM13_johanna-t-r.png",
        "TUM13_meike-front.png",        // Meike
        "TUM13_meike-t.png",
        "TUM13_meike-t-l.png",
        "TUM13_meike-l.png",
        "TUM13_meike-b-l.png",
        "TUM13_meike-b.png",
        "TUM13_meike-b-r.png",
        "TUM13_meike-r.png",
        "TUM13_meike-t-r.png",
        "TUM13_volker-front.png",        // Volker
        "TUM13_volker-t.png",
        "TUM13_volker-t-l.png",
        "TUM13_volker-l.png",
        "TUM13_volker-b-l.png",
        "TUM13_volker-b.png",
        "TUM13_volker-b-r.png",
        "TUM13_volker-r.png",
        "TUM13_volker-t-r.png",
        "TUM13_polte-front.png",        // Polte
        "TUM13_polte-t.png",
        "TUM13_polte-t-l.png",
        "TUM13_polte-l.png",
        "TUM13_polte-b-l.png",
        "TUM13_polte-b.png",
        "TUM13_polte-b-r.png",
        "TUM13_polte-r.png",
        "TUM13_polte-t-r.png",
        "TUM13_leonie-front.png",        // Leonie
        "TUM13_leonie-t.png",
        "TUM13_leonie-t-l.png",
        "TUM13_leonie-l.png",
        "TUM13_leonie-b-l.png",
        "TUM13_leonie-b.png",
        "TUM13_leonie-b-r.png",
        "TUM13_leonie-r.png",
        "TUM13_leonie-t-r.png",
        "TUM13_philipp-front.png",        // Philipp
        "TUM13_philipp-t.png",
        "TUM13_philipp-t-l.png",
        "TUM13_philipp-l.png",
        "TUM13_philipp-b-l.png",
        "TUM13_philipp-b.png",
        "TUM13_philipp-b-r.png",
        "TUM13_philipp-r.png",
        "TUM13_philipp-t-r.png",
        "TUM13_jeff-front.png",        // Jeff
        "TUM13_jeff-t.png",
        "TUM13_jeff-t-l.png",
        "TUM13_jeff-l.png",
        "TUM13_jeff-b-l.png",
        "TUM13_jeff-b.png",
        "TUM13_jeff-b-r.png",
        "TUM13_jeff-r.png",
        "TUM13_jeff-t-r.png",
        "TUM13_chris-front.png",        // Chris
        "TUM13_chris-t.png",
        "TUM13_chris-t-l.png",
        "TUM13_chris-l.png",
        "TUM13_chris-b-l.png",
        "TUM13_chris-b.png",
        "TUM13_chris-b-r.png",
        "TUM13_chris-r.png",
        "TUM13_chris-t-r.png",
        "TUM13_flo-front.png",        // Flo
        "TUM13_flo-t.png",
        "TUM13_flo-t-l.png",
        "TUM13_flo-l.png",
        "TUM13_flo-b-l.png",
        "TUM13_flo-b.png",
        "TUM13_flo-b-r.png",
        "TUM13_flo-r.png",
        "TUM13_flo-t-r.png" );

}

// Slideshows

$('.bxslider').bxSlider({

   responsive: false,
   auto: true,
   autoHover: true

});

$('.bxgallery').bxSlider({

   slideMargin: 10,
   minSlides: 3,
   maxSlides: 3,
   moveSlides: 1,
   slideWidth: 5000

});

$("ul.bxgallery img").slimbox({ loop: true }, function(el) { url = el.src; url = url.substring(0, url.lastIndexOf('/')); url = url.replace('/thumb/', '/'); // description = $(el).parents("div.thumbinner").children("div.thumbcaption").text(); return [url, ]; }, function(el) { return (this == el) || (this.parentNode.parentNode && (this.parentNode.parentNode == el.parentNode.parentNode)); });


// Counter and Countdown

function render_counter(c) { i = 0; iid = window.setInterval(function(){ if ( (c-i) > (c/200) ) { $('span#counter').html(i); i += Math.round(c/200); } else { $('span#counter').html(c); window.clearInterval(iid); } }, 10); }

if ($('span#counter').length > 0) { $.ajax({ url: "https://2013.igem.org/Special:PopularPages", success: function( html ) { dom = $.parseHTML(html); visitors = $(dom).find('a[title="Team:TU-Munich"]').parent().text(); visitors = visitors.substring(visitors.indexOf('(')+1); visitors = visitors.substring(0, visitors.indexOf(' ')); visitors = visitors.replace(',', ); render_counter(visitors); }, error: function( xhr, status ) { render_counter(4700); } }); }

if ($('span#countdown) { clock = window.setInterval(function(){ jetzt = new Date(); time_left = Date.UTC(2013, 9, 5, 4, 0, 0) - Date.UTC(jetzt.getUTCFullYear(), jetzt.getUTCMonth(), jetzt.getUTCDate(), jetzt.getUTCHours(), jetzt.getUTCMinutes(), jetzt.getUTCSeconds()); left_sec = (time_left/1000)%60; left_sec = (left_sec < 10) ? "0" + left_sec : left_sec; left_min = Math.floor(time_left/60000)%60; left_min = (left_min < 10) ? "0" + left_min : left_min; left_h = Math.floor(time_left/3600000)%24; left_h = (left_h < 10) ? "0" + left_h : left_h; left_d = Math.floor(time_left/86400000); left_d = (left_d == 1) ? left_d + " day" : left_d + " days"; $('span#countdown').html(left_d + " " + left_h + ":" + left_min + ":" + left_sec); }, 1000); }

// Animate teamfield

if ( $("div#teamfield").length > 0 ) {

var $members = $("div#teamfield a");

$("body").mousemove(function(event){ for (i=0; i<$members.length; i++) {

if ( $members.eq(i).offset().left > event.pageX ) {

   if ( $members.eq(i).offset().top > event.pageY ) {
       $members.eq(i).removeClass();
       $members.eq(i).addClass("top-left");
   } else if ( $members.eq(i).offset().top <= event.pageY && ( $members.eq(i).offset().top + $members.eq(i).height() ) >= event.pageY ) {
       $members.eq(i).removeClass();
       $members.eq(i).addClass("left");
   } else if ( ( $members.eq(i).offset().top + $members.eq(i).height() ) < event.pageY ) {
       $members.eq(i).removeClass();
       $members.eq(i).addClass("bottom-left");
   }

} else if ( $members.eq(i).offset().left <= event.pageX && ( $members.eq(i).offset().left + $members.eq(i).width() ) >= event.pageX ) {

   if ( $members.eq(i).offset().top > event.pageY ) {
       $members.eq(i).removeClass();
       $members.eq(i).addClass("top");
   } else if ( $members.eq(i).offset().top <= event.pageY && ( $members.eq(i).offset().top + $members.eq(i).height() ) >= event.pageY ) {
       $members.eq(i).removeClass();
       $members.eq(i).addClass("front");
   } else if ( ( $members.eq(i).offset().top + $members.eq(i).height() ) < event.pageY ) {
       $members.eq(i).removeClass();
       $members.eq(i).addClass("bottom");
   }    

} else if ( ( $members.eq(i).offset().left + $members.eq(i).width() ) < event.pageX ) {

   if ( $members.eq(i).offset().top > event.pageY ) {
       $members.eq(i).removeClass();
       $members.eq(i).addClass("top-right");
   } else if ( $members.eq(i).offset().top <= event.pageY && ( $members.eq(i).offset().top + $members.eq(i).height() ) >= event.pageY ) {
       $members.eq(i).removeClass();
       $members.eq(i).addClass("right");
   } else if ( ( $members.eq(i).offset().top + $members.eq(i).height() ) < event.pageY ) {
       $members.eq(i).removeClass();
       $members.eq(i).addClass("bottom-right");
   }  

}

} });

}

});