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Team:OUC-China/Microfluidics
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| - | <div class="span9"><p style="font-weight:normal;"><font size="2px">Detecting the magnetism of small amount of bacterial sample is always difficult, because not only the sample is so little that normal magnetic spectrophotometer could not fetch precise data, but also the debugging of magnetic spectrophotometer is quite difficult and expensive for the exist of earth magnetic field.<br /><br />Since our compartment gene is from Magnetospirillum Magneticum which is able to do directional movement along the geomagnetic field due to its magnetosome, so we need to culture the Magnetospirillum Magneticum AMB-1 strain firstly. While we cultured the AMB-1 bacteria strain, we found that if we hope to evaluate whether our culture scheme is feasible, we should confilm not only the grow, but also the magnetism of the bacteria is normal .So we designed an easy solution of bacteria magnetism detection for smallamount of samplesto make our bacteria magnetism detection easier and cheaper. When we need to detect the bacteria sample, we could just use Microfluidic chip in our own lad instead of processing our sample to TEM detection waiting for a long time and wasting so much money.<br /><br />According to our experiment,We utilize the fact that the Magnetospirillum Magneticum has magnetism to build a mathematical model reflecting the relationship between the bacterial number and magnetic field intensity. So we design the microfluidic chip below to compose the detection.</font></p> | + | <div class="span9"><p style="font-weight:normal;"><font size="2px">Detecting the magnetism of small amount of bacterial sample is always difficult, because not only the sample is so little that normal magnetic spectrophotometer could not fetch precise data, but also the debugging of magnetic spectrophotometer is quite difficult and expensive for the exist of earth magnetic field.<br /><br />Since our compartment gene is from <i>Magnetospirillum Magneticum</i> which is able to do directional movement along the geomagnetic field due to its magnetosome, so we need to culture the <i>Magnetospirillum Magneticum</i> AMB-1 strain firstly. While we cultured the AMB-1 bacteria strain, we found that if we hope to evaluate whether our culture scheme is feasible, we should confilm not only the grow, but also the magnetism of the bacteria is normal .So we designed an easy solution of bacteria magnetism detection for smallamount of samplesto make our bacteria magnetism detection easier and cheaper. When we need to detect the bacteria sample, we could just use Microfluidic chip in our own lad instead of processing our sample to TEM detection waiting for a long time and wasting so much money.<br /><br />According to our experiment,We utilize the fact that the <i>Magnetospirillum Magneticum</i> has magnetism to build a mathematical model reflecting the relationship between the bacterial number and magnetic field intensity. So we design the microfluidic chip below to compose the detection.</font></p> |
<img src="https://static.igem.org/mediawiki/2013/b/b1/Ouc-Microfluidics.jpg" height="500" width="600" /><br />Fig.1 Structure of microfluidic chip.<br /><br /> | <img src="https://static.igem.org/mediawiki/2013/b/b1/Ouc-Microfluidics.jpg" height="500" width="600" /><br />Fig.1 Structure of microfluidic chip.<br /><br /> | ||
| - | <div class="span9"><p style="font-weight:normal;"><font size="2px">Just as the figure above, the microfluidic chip is divided into three channels, Channel 1,Channel 2 and Channel 3. The Channel 1 is a narrow channel allows the | + | <div class="span9"><p style="font-weight:normal;"><font size="2px"> Just as the figure above, the microfluidic chip is divided into three channels, Channel 1, Channel 2 and Channel 3. The Channel 1 is a narrow channel, it is 2 mm long and diameter is 0.04 mm, which allows the bacterial to broth slowly flows through, then the bacteria enter Channel 2, a relatively wide area, which is 3 mm long and 2 mm wide, also called the magnetic deflection area, in which bacteria will change course under the action of magnetic field we apply. After deflected in the magnetic field, the bacteria will go into Channel 3, which is 2 mm long and 2 mm wide, divided into fifty smaller channels with a filter, the filter is 0.9254 mm long and its diameter is 0.04 mm, and the bacteria will stay inside under the effect of the filter. After a certain amount of time, we count the bacteria in the small channel under the inverted microscope. Finally we build a model according the relationship between bacterial number and magnetic field intensity to show the magnetism of bacteria sample.</font></p></div> |
<div class="span9"><p style="font-weight:normal;"><font size="2px">As for our solution:<br />1. Culture 20mL samples about 12 h at 37℃.<br />2. Use 5ml syringes to get 3ml sterile water, drain the air in the syringe.<br /> 3. Connect the capillary and needle of syringe, and keep good air tightness. If the tightness is bad, the sample may be leak. Clear the air in the capillary by discharging part of liquid.<br />4. Inset the other end of capillary into injection port of microfluidic chip. According to the principle of liquid pressure, drain air in microfluidic chip by using liquid. Cause chip’s internal channel to form a vacuum environment.<br />5. Slowly pull out capillary from chip’s injection port. Be careful not to remove the water droplets on the injection port, because the water has a seal on the interior of the chip and prevents air from entering the hole.<br />6. Get 4 ml of bacteria cuiture with a new syringe. Drain the air in the syringe. Repeat step 2, fix the syringe at the formwork units(13 cm from the bottom of formwork units). Make the capillary parallel to the chip, that can make the bacterial liquid slowly flow into the chip. At the same time, put a strong square magnet on the side of the chip in order to apply a magnetic field (perpendicular to channel 2 in the same plane). Locate the magnet and the chip by taking down their positions using a ruler or drawing a grid of parallel lines spaced 1 cm.<br />7. After 110 min (time may vary according to the case), remove the syringe, and use the Gauss meter to detect the magnetic field. The Gauss meter should be placed on the chip’s position.<br />8. Observe the chip under inverted microscope, magnification is 400 times. Count the number of bacteria within each channel. | <div class="span9"><p style="font-weight:normal;"><font size="2px">As for our solution:<br />1. Culture 20mL samples about 12 h at 37℃.<br />2. Use 5ml syringes to get 3ml sterile water, drain the air in the syringe.<br /> 3. Connect the capillary and needle of syringe, and keep good air tightness. If the tightness is bad, the sample may be leak. Clear the air in the capillary by discharging part of liquid.<br />4. Inset the other end of capillary into injection port of microfluidic chip. According to the principle of liquid pressure, drain air in microfluidic chip by using liquid. Cause chip’s internal channel to form a vacuum environment.<br />5. Slowly pull out capillary from chip’s injection port. Be careful not to remove the water droplets on the injection port, because the water has a seal on the interior of the chip and prevents air from entering the hole.<br />6. Get 4 ml of bacteria cuiture with a new syringe. Drain the air in the syringe. Repeat step 2, fix the syringe at the formwork units(13 cm from the bottom of formwork units). Make the capillary parallel to the chip, that can make the bacterial liquid slowly flow into the chip. At the same time, put a strong square magnet on the side of the chip in order to apply a magnetic field (perpendicular to channel 2 in the same plane). Locate the magnet and the chip by taking down their positions using a ruler or drawing a grid of parallel lines spaced 1 cm.<br />7. After 110 min (time may vary according to the case), remove the syringe, and use the Gauss meter to detect the magnetic field. The Gauss meter should be placed on the chip’s position.<br />8. Observe the chip under inverted microscope, magnification is 400 times. Count the number of bacteria within each channel. | ||
Revision as of 20:54, 27 September 2013
Microfluidics
Detecting the magnetism of small amount of bacterial sample is always difficult, because not only the sample is so little that normal magnetic spectrophotometer could not fetch precise data, but also the debugging of magnetic spectrophotometer is quite difficult and expensive for the exist of earth magnetic field.
Since our compartment gene is from Magnetospirillum Magneticum which is able to do directional movement along the geomagnetic field due to its magnetosome, so we need to culture the Magnetospirillum Magneticum AMB-1 strain firstly. While we cultured the AMB-1 bacteria strain, we found that if we hope to evaluate whether our culture scheme is feasible, we should confilm not only the grow, but also the magnetism of the bacteria is normal .So we designed an easy solution of bacteria magnetism detection for smallamount of samplesto make our bacteria magnetism detection easier and cheaper. When we need to detect the bacteria sample, we could just use Microfluidic chip in our own lad instead of processing our sample to TEM detection waiting for a long time and wasting so much money.
According to our experiment,We utilize the fact that the Magnetospirillum Magneticum has magnetism to build a mathematical model reflecting the relationship between the bacterial number and magnetic field intensity. So we design the microfluidic chip below to compose the detection.
Fig.1 Structure of microfluidic chip.
Just as the figure above, the microfluidic chip is divided into three channels, Channel 1, Channel 2 and Channel 3. The Channel 1 is a narrow channel, it is 2 mm long and diameter is 0.04 mm, which allows the bacterial to broth slowly flows through, then the bacteria enter Channel 2, a relatively wide area, which is 3 mm long and 2 mm wide, also called the magnetic deflection area, in which bacteria will change course under the action of magnetic field we apply. After deflected in the magnetic field, the bacteria will go into Channel 3, which is 2 mm long and 2 mm wide, divided into fifty smaller channels with a filter, the filter is 0.9254 mm long and its diameter is 0.04 mm, and the bacteria will stay inside under the effect of the filter. After a certain amount of time, we count the bacteria in the small channel under the inverted microscope. Finally we build a model according the relationship between bacterial number and magnetic field intensity to show the magnetism of bacteria sample.
As for our solution:
1. Culture 20mL samples about 12 h at 37℃.
2. Use 5ml syringes to get 3ml sterile water, drain the air in the syringe.
3. Connect the capillary and needle of syringe, and keep good air tightness. If the tightness is bad, the sample may be leak. Clear the air in the capillary by discharging part of liquid.
4. Inset the other end of capillary into injection port of microfluidic chip. According to the principle of liquid pressure, drain air in microfluidic chip by using liquid. Cause chip’s internal channel to form a vacuum environment.
5. Slowly pull out capillary from chip’s injection port. Be careful not to remove the water droplets on the injection port, because the water has a seal on the interior of the chip and prevents air from entering the hole.
6. Get 4 ml of bacteria cuiture with a new syringe. Drain the air in the syringe. Repeat step 2, fix the syringe at the formwork units(13 cm from the bottom of formwork units). Make the capillary parallel to the chip, that can make the bacterial liquid slowly flow into the chip. At the same time, put a strong square magnet on the side of the chip in order to apply a magnetic field (perpendicular to channel 2 in the same plane). Locate the magnet and the chip by taking down their positions using a ruler or drawing a grid of parallel lines spaced 1 cm.
7. After 110 min (time may vary according to the case), remove the syringe, and use the Gauss meter to detect the magnetic field. The Gauss meter should be placed on the chip’s position.
8. Observe the chip under inverted microscope, magnification is 400 times. Count the number of bacteria within each channel.
What’s more in order to make sure our detecting result is accurate, we composed TEM detection to the same sample we used in microfluidic chip. The result of TEM is below, just as we see, the structure of magnetosome is integrated, and there are also many Fe particle around the cell. So we think the sample that we detected contains normal magnetism and mgnetosome structure. Our magnetosome detection is accurate.
The magnetosome structure of AMB-1 we cultured. There are distinct magnetosome chains in the cells, and many Fe particles around it.
The figure shows the distribution of bacteria sample.
The red broken line shows the distribution of AMB-1 we cultured, the magnetic field interference is on the left of the detection area. And the distribution shows obvious deflection.
The figure shows the distribution of bacteria sample.
