Team:ATOMS-Turkiye/Project/Module1/Goals

Goals & Challenges

Module 1 of our project consists of four stages

1· To detect cancer cells specifically using the nanofactory complex.

Firstly, we had to devise a system which would detect the cancer cells. This challenge was solved by searching for a specific marker present on cancer cells; this was EpCaM(1). EpCAM markers are present on both healthy cells and cancer cells. However according to an article the number o EpCAM present on cancer cells are 100 times more compared to a healthy cell. Nanofactories were the complexes we aimed to detect cancer cells. This complex consists of an Anti-EpCAM antibody that would bind to EpCAM antigens present on the cancer cells.We designed our bacteria as an effective alternative to presenting antibody parts of our nanofactory on its surface. It was an obligation for us to use anti-EpCAM for binding. While we were researching on EpCAM, we found anti-EpCAM’S active domain called C215. C215 does the same job as Anti-Epcam though it is smaller than anti-EpCAM. Therefore, our choice was C215. With presenting C215 on the outer membrane, we designed a bacteria called “nanobacterium”. This bacteria will find the cancer cells and accumulate around them, which will call our bacteria towards the cancer cells.

2· Producing AI-2 by our nanofactory without cease

After detection we need a calling system to call the bacteria toward the cancer cells and we used a quorum sensing material called Auto Inducer-2(AI-2). AI-2 produced by our nanofactories call our bacteria towards the cancer cells which move via the taxis method.

3· Expression of cancer specific apoptotic protein by the bacteria because of AI-2 concentration

We need to trigger the cancer killer protein expressioning mechanism with a stimulant. This was a serious problem. We solved this challenge by using intentive AI-2 concentration near by of cancer cells. The bacteria will sytnthesize our protein when AI-2 concentration reaches to a certain level. When the bacteria arrive to around the intensive concentration of AI-2, this situation triggers a mechanism of the bacteria which produces our killer protein.

4· Secreting the killer protein out of the cell with signal peptides.

We used HLYA signal peptide to secrete our apoptotic proteins from the bacteria. We also wished to use TorA signal peptide as an alternative to HLYA (3). While we were using TorA, it was secreting our proteins to periplasm,not to extra cellular matrix. To solute this problem we used a chemical substance for pokes holes on the outer membrane. And our proteins released after this step.

(1)EpCAM overexpression prolongs proliferative capacity of primary human breast epithelial cells and supports hyperplastic growth Agnieszka Martowicz1, Johannes Rainer2, Julien Lelong2, Gilbert Spizzo1, Guenther Gastl13 and Gerold Untergasser3*

(2) Biological Nanofactories Target and Activate Epithelial Cell Surfaces for Modulating Bacterial Quorum Sensing and Interspecies Signaling Colin G. Hebert,†, Apoorv Gupta,§ Rohan Fernandes,†, Chen-Yu Tsao,†, James J. Valdes,‡ and William E. Bentley†,§