Team:Duke/Modeling/Codes

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Contents

Mathematical Modeling of Bistable Toggle Switch

Codes

Thermodynamic Model

  1. P_bound vs. Number of Binding Sites (MATLAB).
  2. P_bound vs. Binding Strengths (MATLAB).



Kinetic Model

  1. Bifurcation Region for Different Promoter Strengths (Mathematica).
  2. Bifurcation Region for Different Binding Strengths (Mathematica).
  3. Bifurcation Region for Different Leakiness (Mathematica).


Navigate

Modeling Pages

  1. Cooperativity and Hill Equation
  2. Thermodynamic Model: Introduction
  3. Thermodynamic Model: Application
  4. Kinetic Model

Supplementary Materials

  1. Derivation of the Thermodynamic Model
  2. MATLAB/Mathematica Codes Used (You are here)





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