Team:Calgary/TestPage

From 2013.igem.org

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<h1>Quantitative App</h1>
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<h2>DNA binding to TALEs<h2>
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<p>The positive DNA&#39;s are colored red, negative DNA is green, TALEs are black and after binding (i.e. saturation) they turn blue. The sliders under &quot;global settings&quot;€ are parameters needed before the simulation runs. Given that a simulation can take 30 seconds to complete, they should not be changed frequently as it will take longer to show the results. The sliders under &quot;€œdisplay settings&quot;€ are parameters needed after the simulation runs. Their responses are much faster and are best played by clicking on the plus sign to the right and hit &quot;€œPlay&quot;. If you only see a grey box, you may need to install the Mathematica CDF Player. The download link can be found <a href="http://www.wolfram.com/cdf-player/">here</a>. Otherwise, the data from our model, as well as images of the app we designed, can be found on the <a href="https://2013.igem.org/Team:Calgary/Project/OurSensor/Modelling/QuantitativeModelling">quantitative modelling page</a>.
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<img align="right" style="width:35%;" src="https://static.igem.org/mediawiki/2013/6/6b/UCalgary2013SWAgenModelInstruction.jpg" style="float: left; clear: both;"></img>
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<li id="Link0" class="SlideLink">Red<!--London--></li><li id="Link1" class="SlideLink">Orange<!--Flower--></li><li id="Link2" class="SlideLink">Green<!--Blue--></li><li id="Link3" class="SlideLink">Blue<!--Tea--></li><li id="Link4" class="SlideLink">Purple<!--Macarons--></li>
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<script type="text/javascript" src="http://www.wolfram.com/cdf-player/plugin/v2.1/cdfplugin.js"></script>
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cdf.embed('http://igem.ucalgary.ca/misc/Deployed.cdf', 430, 800);
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<h2>Generic Title Goes Here</h2>
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<h2>Enzyme kinetics of horseradish peroxidase</h2>
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Lorem ipsum dolor sit amet, consectetuer adipiscing elit, sed diam nonummy nibh euismod tincidunt ut laoreet dolore magna aliquam erat volutpat. Ut wisi enim ad minim veniam, quis nostrud exerci tation ullamcorper suscipit lobortis nisl ut aliquip ex ea commodo consequat. Duis autem vel eum iriure dolor in hendrerit in vulputate velit esse molestie consequat, vel illum dolore eu feugiat nulla facilisis at vero eros et accumsan et iusto odio dignissim qui blandit praesent luptatum zzril delenit augue duis dolore te feugait nulla facilisi. Nam liber tempor cum soluta nobis eleifend option congue nihil imperdiet doming id quod mazim placerat facer possim assum. Typi non habent claritatem insitam; est usus legentis in iis qui facit eorum claritatem. Investigationes demonstraverunt lectores legere me lius quod ii legunt saepius. Claritas est etiam processus dynamicus, qui sequitur mutationem consuetudium lectorum. Mirum est notare quam littera gothica, quam nunc putamus parum claram, anteposuerit litterarum formas humanitatis per seacula quarta decima et quinta decima. Eodem modo typi, qui nunc nobis videntur parum clari, fiant sollemnes in futurum.
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<script type="text/javascript" src="http://www.wolfram.com/cdf-player/plugin/v2.1/cdfplugin.js"></script>
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Lorem ipsum dolor sit amet, consectetuer adipiscing elit, sed diam nonummy nibh euismod tincidunt ut laoreet dolore magna aliquam erat volutpat. Ut wisi enim ad minim veniam, quis nostrud exerci tation ullamcorper suscipit lobortis nisl ut aliquip ex ea commodo consequat. Duis autem vel eum iriure dolor in hendrerit in vulputate velit esse molestie consequat, vel illum dolore eu feugiat nulla facilisis at vero eros et accumsan et iusto odio dignissim qui blandit praesent luptatum zzril delenit augue duis dolore te feugait nulla facilisi. Nam liber tempor cum soluta nobis eleifend option congue nihil imperdiet doming id quod mazim placerat facer possim assum. Typi non habent claritatem insitam; est usus legentis in iis qui facit eorum claritatem. Investigationes demonstraverunt lectores legere me lius quod ii legunt saepius. Claritas est etiam processus dynamicus, qui sequitur mutationem consuetudium lectorum. Mirum est notare quam littera gothica, quam nunc putamus parum claram, anteposuerit litterarum formas humanitatis per seacula quarta decima et quinta decima. Eodem modo typi, qui nunc nobis videntur parum clari, fiant sollemnes in futurum.
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var cdf = new cdfplugin();
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cdf.embed('http://igem.ucalgary.ca/misc/HorseradishPeroxidase.cdf', 350, 360);
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<h2>Enzyme kinetics of beta-galactosidase</h2>
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<h2>Link 1</h2>
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<script type="text/javascript" src="http://www.wolfram.com/cdf-player/plugin/v2.1/cdfplugin.js"></script>
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Lorem ipsum dolor sit amet, consectetuer adipiscing elit, sed diam nonummy nibh euismod tincidunt ut laoreet dolore magna aliquam erat volutpat. Ut wisi enim ad minim veniam, quis nostrud exerci tation ullamcorper suscipit lobortis nisl ut aliquip ex ea commodo consequat. Duis autem vel eum iriure dolor in hendrerit in vulputate velit esse molestie consequat, vel illum dolore eu feugiat nulla facilisis at vero eros et accumsan et iusto odio dignissim qui blandit praesent luptatum zzril delenit augue duis dolore te feugait nulla facilisi.
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cdf.embed('http://igem.ucalgary.ca/misc/Beta-Galactosidase.cdf', 350, 330);
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<h2>Frequently Asked Questions
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<h3>1. Can I see your code?
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<p>Sure! Here are <a href="https://static.igem.org/mediawiki/2013/3/3a/UCalgary2013SWTheCode.txt" target="_blank">DNA binding to TALEs agent based model</a>,
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<a href="https://static.igem.org/mediawiki/2013/b/b5/UCalgary2013SWHorseradishPeroxidaseCode.txt" target="_blank">horseradish peroxidase kinetic model</a>, and
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<div class="DescriptionLink">
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<a href="https://static.igem.org/mediawiki/2013/0/08/UCalgary2013SWBeta-GalactosidaseCode.txt " target="_blank">beta-galactosidase kinetic model</a>.
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<h3>2. I see a block of text with red background. What should I do?
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<p>Don&#39;t worry, everything is under control. For the DNA binding to TALEs agent based model, wait for at least 30 seconds. If the problem persists, reset the current time to 1. For the kinetic models, use the plus/minus sign to change the parameters, or simply hit auto-run on the upper-right corner.
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Latest revision as of 03:19, 28 September 2013

Quantitative App

DNA binding to TALEs

The positive DNA's are colored red, negative DNA is green, TALEs are black and after binding (i.e. saturation) they turn blue. The sliders under "global settings"€ are parameters needed before the simulation runs. Given that a simulation can take 30 seconds to complete, they should not be changed frequently as it will take longer to show the results. The sliders under "€œdisplay settings"€ are parameters needed after the simulation runs. Their responses are much faster and are best played by clicking on the plus sign to the right and hit "€œPlay". If you only see a grey box, you may need to install the Mathematica CDF Player. The download link can be found here. Otherwise, the data from our model, as well as images of the app we designed, can be found on the quantitative modelling page.

Enzyme kinetics of horseradish peroxidase

Enzyme kinetics of beta-galactosidase

Frequently Asked Questions

1. Can I see your code?

Sure! Here are DNA binding to TALEs agent based model, horseradish peroxidase kinetic model, and beta-galactosidase kinetic model.

2. I see a block of text with red background. What should I do?

Don't worry, everything is under control. For the DNA binding to TALEs agent based model, wait for at least 30 seconds. If the problem persists, reset the current time to 1. For the kinetic models, use the plus/minus sign to change the parameters, or simply hit auto-run on the upper-right corner.

Retrieved from "http://2013.igem.org/Team:Calgary/TestPage"