"
Team:INSA Toulouse/contenu/lab practice/notebook/calendar/dry lab
From 2013.igem.org
(Difference between revisions)
Mesnageclem (Talk | contribs) |
|||
| Line 45: | Line 45: | ||
.imgcontent{margin: 0 0 45px 0; border: 1px solid #e5e6e6;} | .imgcontent{margin: 0 0 45px 0; border: 1px solid #e5e6e6;} | ||
| + | |||
| + | .imgcontent2{margin: 0 10px 0 0; border: 1px solid #e5e6e6;} | ||
.imgcontentleft{margin: 0 0 10px 0; border: 1px solid #e5e6e6; float:left;} | .imgcontentleft{margin: 0 0 10px 0; border: 1px solid #e5e6e6; float:left;} | ||
| Line 88: | Line 90: | ||
{ | { | ||
color: #5a6060;} | color: #5a6060;} | ||
| + | |||
| + | h2.faq { | ||
| + | display:list-item; | ||
| + | list-style-image : url(https://static.igem.org/mediawiki/2013/8/84/Insa-toulouse2013-listpuce1.png); | ||
| + | width:auto; | ||
| + | height:27px; | ||
| + | line-height:24px; | ||
| + | background: no-repeat; | ||
| + | border:none; | ||
| + | color:#5a6060; | ||
| + | padding:3px 0 0 0; | ||
| + | font-weight:400; | ||
| + | font-family:'Open Sans'; | ||
| + | margin:0 0 50px 0; | ||
| + | font-size:14px; | ||
| + | } | ||
| + | |||
| + | .infos {width:680px; margin:0 15px 50px 0;} | ||
| + | |||
| + | .infos ul{color:#5a6060; font-family:'Open Sans'; font-size:14px; line-height:28px; } | ||
| + | |||
| + | .infos .circlearrow li{ display : list-item; list-style-image : url(https://static.igem.org/mediawiki/2013/9/94/Insa-toulouse2013-listpuce2.png);} | ||
| + | |||
| + | </style> | ||
| + | |||
| + | |||
| + | <script type="text/javascript" src="js/jquery.js"></script> | ||
| + | <script type="text/javascript"> | ||
| + | <!-- | ||
| + | $(document).ready(function(){ | ||
| + | // On cache les sous-menus : | ||
| + | $('div.accordeon div.infos').hide(); | ||
| + | // Curseur main sur les h2 | ||
| + | $('div.accordeon > h2.faq').css('cursor','pointer'); | ||
| + | $('div.accordeon > h2').click(function(){ | ||
| + | //si ouvert -> referme | ||
| + | if($(this).next('div.infos:visible').length!=0){ | ||
| + | $(this).next('div.infos').slideUp('normal'); | ||
| + | } | ||
| + | //si cache, on ferme les autres et on affiche | ||
| + | else { | ||
| + | $('div.accordeon div.infos').slideUp('normal'); | ||
| + | $(this).next('div.infos').slideDown('normal'); | ||
| + | } | ||
| + | return false; | ||
| + | }); | ||
| + | } ) ; | ||
| + | // --> | ||
| + | </script> | ||
| + | |||
| + | |||
| + | |||
</style> | </style> | ||
<!--/* HTML Contenu*/--> | <!--/* HTML Contenu*/--> | ||
| + | |||
<div class="maincontent" style="width: 720px; margin: 25px 0 25px 0; float: right;"> | <div class="maincontent" style="width: 720px; margin: 25px 0 25px 0; float: right;"> | ||
| Line 104: | Line 159: | ||
<div class="clear"></div> | <div class="clear"></div> | ||
| + | <div class="accordeon"> | ||
| - | < | + | <h2 class="faq" title="Click to open the FAQ">June 2013</h2> |
| - | + | <div class="infos"> | |
| - | + | ||
| - | < | + | |
<ul class="circlearrow"> | <ul class="circlearrow"> | ||
<li><span class="spantitle2">Week 1 (10-16 June)</span><br> | <li><span class="spantitle2">Week 1 (10-16 June)</span><br> | ||
| Line 124: | Line 178: | ||
A new idea for logic gates design came up : recombinases can turn terminators over , instead of genes themselves. So we had to find adapted terminators in the registry part, that is to say very efficient ones in both ways of transcription.<br> | A new idea for logic gates design came up : recombinases can turn terminators over , instead of genes themselves. So we had to find adapted terminators in the registry part, that is to say very efficient ones in both ways of transcription.<br> | ||
As far as the integration in concerned, reflexion keeps going. The final host can not have more than two plasmids, with two different markers and origins of replication. | As far as the integration in concerned, reflexion keeps going. The final host can not have more than two plasmids, with two different markers and origins of replication. | ||
| - | AND1/AND2 gates should be on a first plasmid and XOR1/XOR2 on an other to reduce recombination problems. Moreover a part of our system has to be integrated in the host’s genome. We did a research about this topic to understand how integrative vectors work. We asked the UNIPV Pavia Team (2010) about their integrative vector for E. coli. Yet, a pir+ strain is needed to make it works... Search has to be continued... | + | AND1/AND2 gates should be on a first plasmid and XOR1/XOR2 on an other to reduce recombination problems. Moreover a part of our system has to be integrated in the host’s genome. We did a research about this topic to understand how integrative vectors work. We asked the UNIPV Pavia Team (2010) about their integrative vector for E. coli. Yet, a pir+ strain is needed to make it works... Search has to be continued...</li> |
| - | </li> | + | </div> |
| - | </ | + | </div> |
| - | </ | + | |
| - | < | + | <div class="accordeon"> |
| + | |||
| + | <h2 class="faq" title="Click to open the FAQ">July 2013</h2> | ||
| + | <div class="infos"> | ||
<ul class="circlearrow"> | <ul class="circlearrow"> | ||
<li><span class="spantitle2">Week 4 (1-7 July)</span><br> | <li><span class="spantitle2">Week 4 (1-7 July)</span><br> | ||
| Line 152: | Line 209: | ||
Website / Logo<br> | Website / Logo<br> | ||
Ethics<br> | Ethics<br> | ||
| - | Conferences and meetings | + | Conferences and meetings</li> |
| - | </li> | + | </div> |
| - | </ | + | </div> |
| - | </ | + | |
| - | < | + | <div class="accordeon"> |
| + | |||
| + | <h2 class="faq" title="Click to open the FAQ">August 2013</h2> | ||
| + | <div class="infos"> | ||
<ul class="circlearrow"> | <ul class="circlearrow"> | ||
<li><span class="spantitle2">Week 8 (29-4 August)</span><br> | <li><span class="spantitle2">Week 8 (29-4 August)</span><br> | ||
| Line 186: | Line 246: | ||
Website / Logo<br> | Website / Logo<br> | ||
Ethics<br> | Ethics<br> | ||
| - | Conferences and meetings | + | Conferences and meetings</li> |
| - | </li> | + | </div> |
| - | </ | + | </div> |
| - | </ | + | |
| - | < | + | <div class="accordeon"> |
| + | |||
| + | <h2 class="faq" title="Click to open the FAQ">September 2013</h2> | ||
| + | <div class="infos"> | ||
<ul class="circlearrow"> | <ul class="circlearrow"> | ||
<li><span class="spantitle2">Week 13 (1-8 September)</span><br> | <li><span class="spantitle2">Week 13 (1-8 September)</span><br> | ||
| Line 214: | Line 277: | ||
Website / Logo<br> | Website / Logo<br> | ||
Ethics<br> | Ethics<br> | ||
| - | Conferences and meetings | + | Conferences and meetings</li> |
| - | </li> | + | </div> |
| - | </ | + | </div> |
| - | </ | + | |
| - | < | + | <div class="accordeon"> |
| + | |||
| + | <h2 class="faq" title="Click to open the FAQ">October 2013</h2> | ||
| + | <div class="infos"> | ||
<ul class="circlearrow"> | <ul class="circlearrow"> | ||
<li><span class="spantitle2">Week 17 (30-6 October)</span><br> | <li><span class="spantitle2">Week 17 (30-6 October)</span><br> | ||
| Line 230: | Line 296: | ||
Website / Logo: Wiki ready to be completed<br> | Website / Logo: Wiki ready to be completed<br> | ||
Ethics<br> | Ethics<br> | ||
| - | Conferences and meetings | + | Conferences and meetings</li> |
| - | </li> | + | </div> |
| - | </ | + | |
| - | + | ||
| - | + | ||
| - | + | ||
</div> | </div> | ||
| - | |||
</div> | </div> | ||
Revision as of 12:18, 27 September 2013
Notebook
Dry Lab Calendar
June 2013
- Week 1 (10-16 June)
During this week litterature searches about biological logic gates and protocols were performed.
We also began to plan the lab work for the following weeks. We started to take an inventory of necessary biobricks already available in plates supplied by the MIT and to mail former iGEM teams to receive the others.
Project complet scheme elaboration with all the needeed biobricks. - Week 2 (17-23 June)
We wondered about the use of another strain DH5-1, with a faster growth and so a reduction of waiting times. Reflexions were also performed about the integration strategy of our system in the bacterial host E. coli.
In parallel, we finalized the final global diagram of our system and intermediate constructions for characterizations (light sensors, carry diffusion (AHL) and general inducer (atC)). These ones have been divided up between team members to start first clonings.
New search and amplification of biobricks with rbs and terminators if possible. - Week 3 (24-30 June)
Design of sequences to synthesize in order to save time : logic gates and our riboswitch regulation system in biobrick format.
A new idea for logic gates design came up : recombinases can turn terminators over , instead of genes themselves. So we had to find adapted terminators in the registry part, that is to say very efficient ones in both ways of transcription.
As far as the integration in concerned, reflexion keeps going. The final host can not have more than two plasmids, with two different markers and origins of replication. AND1/AND2 gates should be on a first plasmid and XOR1/XOR2 on an other to reduce recombination problems. Moreover a part of our system has to be integrated in the host’s genome. We did a research about this topic to understand how integrative vectors work. We asked the UNIPV Pavia Team (2010) about their integrative vector for E. coli. Yet, a pir+ strain is needed to make it works... Search has to be continued...
July 2013
- Week 4 (1-7 July)
Modeling
Website / Logo
Ethics
Conferences and meetings - Week 5 (8-14 July)
Modeling
Website / Logo
Ethics
Conferences / meetings : Meeting with Mr Cornet about the integration strategy. - Week 6 (15-21 July)
Modeling
Website / Logo
Ethics
Conferences and meetings - Week 7 (22-28 July)
Modeling
Website / Logo
Ethics
Conferences and meetings
August 2013
- Week 8 (29-4 August)
Modeling
Website / Logo
Ethics
Conferences and meetings - Week 9 (5-11 August)
Modeling
Website / Logo: Wiki ready to be completed
Ethics
Conferences and meetings - Week 10 (12-18 August)
Modeling
Website / Logo
Ethics
Conferences and meetings - Week 11 (19-25 August)
Modeling
Website / Logo
Ethics
Conferences and meetings - Week 12 (26-31 August)
Modeling
Website / Logo
Ethics
Conferences and meetings
September 2013
- Week 13 (1-8 September)
Modeling
Website / Logo
Ethics
Conferences and meetings - Week 14 (9-15 September)
Modeling
Website / Logo: Wiki ready to be completed
Ethics
Conferences and meetings - Week 15 (16-22 September)
Modeling
Website / Logo
Ethics
Conferences and meetings: presentation of the project and the summer's achievements to the LISBP. - Week 16 (23-29 September)
Modeling
Website / Logo
Ethics
Conferences and meetings
October 2013
- Week 17 (30-6 October)
Modeling
Website / Logo
Ethics
Conferences and meetings - Week 18 (7-13 October)
Modeling
Website / Logo: Wiki ready to be completed
Ethics
Conferences and meetings
