Team:Paris Saclay/Notebook/August/28

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'''A - Aerobic/Anaerobic regulation system / B - PCB sensing system'''
'''A - Aerobic/Anaerobic regulation system / B - PCB sensing system'''
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**''1 - Gel extraction of the PSB1C3 Clean for Gibson.''
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*''1 - Gel extraction of the PSB1C3 Clean for Gibson.''
Protocol : [[Team:Paris_Saclay/Protocols/Gel extraction|Gel extraction]]  
Protocol : [[Team:Paris_Saclay/Protocols/Gel extraction|Gel extraction]]  
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*''2- Migration of 3µl PSB1C3 Clean for Gibson (product gel extraction) '
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**''2- Migration of 3µl PSB1C3 Clean for Gibson (product gel extraction) '
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*Gel : 1.0%
*Gel : 1.0%
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**''3- product quantification.''
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*''3- product quantification.''
:We used the nano drop to measure the DNA in 260nm and we found its concentration  
:We used the nano drop to measure the DNA in 260nm and we found its concentration  
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{| border="1" align="center"
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**''4 - Gibson assembly.''
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*''4 - Gibson assembly.''
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These 3 mixture is incubated at 50°C for up to one hour.
These 3 mixture is incubated at 50°C for up to one hour.
Transformation and spread in 6 LB plates with Chlorenphenicol . Incubate at 37°C over night.
Transformation and spread in 6 LB plates with Chlorenphenicol . Incubate at 37°C over night.
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 +
 +
 +
'''A - Aerobic/Anaerobic regulation system '''
 +
*''1 - Purify single clone of promoter fnr(activator)nirB + RBS_LacZ+Term_PSB1C3  on plates wiht Chlorenphenicol and Xgal.incubated at 37°C in anaerobic condition over night. ''
 +
Protocol : [[Team:Paris_Saclay/Protocols/Purify single clone|Purify single clone]]
 +
*''2 - Purify single clone of promoter promoter fnr(repressor)+ RBS_LacZ+Term_PSB1C3 on plates wiht Chlorenphenicol and Xgal.incubated at 37°C in aerobic condition over night''
 +
 +
*''3 - Purify single clone  of promoter fnr(activator)nirB + RBS_AmilCP+Term_PSB1C3 on plates wiht Chlorenphenicol.incubated at 37°C in anaerobic condition over night''
 +
 +
*''4 - Purify 4 single purple colony  of promoter  fnr(repressor)+ RBS_AmilCP+Term_PSB1C3 on two plates wiht Chlorenphenicol .incubated at 37°C in aerobic and anaerobic condition over night''
 +
 +
*''5- Purify single clone  of B5 promoter fnr(activator)nirB + RBS_AmilCP+Term_PSB1C3 on plates wiht Chlorenphenicol.incubated at 37°C in anaerobic condition over night''
 +
 +
*''6- Purify single clone  of D1, D5, D6 promoter  fnr(repressor)+ RBS_AmilCP+Term_PSB1C3 on two plates wiht Chlorenphenicol .incubated at 37°C in aerobic and anaerobic condition over night''
 +
 +
*''7- Purify single clone of C1, C2, C5 ,C6promoter promoter fnr(repressor)+ RBS_LacZ+Term_PSB1C3 on plates wiht Chlorenphenicol and Xgal.incubated at 37°C in aerobic condition over night''

Revision as of 15:47, 12 September 2013

Navigation Home Team Project Labwork Notebook Human practices

Notebook : August 27

summary

  • We got clonies on ligation promoter fnr(activator)nirB plus RBS_LacZ+Term_PSB1C3

promoter fnr(activator)nirB plus RBS_AmilCP+Term_PSB1C3 promoter fnr(repressor) plus RBS_LacZ+Term_PSB1C3 promoter fnr(repressor) plus RBS_AmilCP+Term_PSB1C3t so we do Colony PCR for it

  • We didn't get clonies on Gibson so we do a gel electrophoresis of parts of Gibson assembly to verify the size
  • Digestion Dnp1 purification of the the PSB1C3 clean for Gibson and electrophoresis of it .


lab work


A - Aerobic/Anaerobic regulation system / B - PCB sensing system

  • 1 - Gel extraction of the PSB1C3 Clean for Gibson.

Protocol : Gel extraction

  • 2- Migration of 3µl PSB1C3 Clean for Gibson (product gel extraction) '
[[]]
  • Well 1 : 6µL DNA Ladder
  • Well 2 : 3µL of PSB1C3 Clean dig Dnp1 gel extraction


  • Gel : 1.0%
  • 3- product quantification.
We used the nano drop to measure the DNA in 260nm and we found its concentration
name PSB1C3 Clean dig Dnp1 gel extraction
conc. 37.2ng/µl



  • 4 - Gibson assembly.


  • RBS_BphR2_part1, BphR2_part2 and plasmid PSB1C3
  • FNR_part1, FNR part1 and plasmid PSB1C3
  • RBS_FNR part1, FNR_part2 and plasmid PSB1C3


Sample Volume:

  • Tube 1 : RBS_BphR2 part1(1ul), BphR2 part2(1ul) , plasmid PSB1C3(3ul),MIX Gibson (15 ul)
  • Tube 2 : FNR part1(1ul), FNR part2(1ul) , plasmid PSB1C3(3ul),MIX Gibson (15 ul)
  • Tube 3 : RBS_FNR part1(1ul), FNR part2(1ul) , plasmid PSB1C3(3ul),MIX Gibson (15 ul)

These 3 mixture is incubated at 50°C for up to one hour. Transformation and spread in 6 LB plates with Chlorenphenicol . Incubate at 37°C over night.


A - Aerobic/Anaerobic regulation system

  • 1 - Purify single clone of promoter fnr(activator)nirB + RBS_LacZ+Term_PSB1C3 on plates wiht Chlorenphenicol and Xgal.incubated at 37°C in anaerobic condition over night.

Protocol : Purify single clone

  • 2 - Purify single clone of promoter promoter fnr(repressor)+ RBS_LacZ+Term_PSB1C3 on plates wiht Chlorenphenicol and Xgal.incubated at 37°C in aerobic condition over night
  • 3 - Purify single clone of promoter fnr(activator)nirB + RBS_AmilCP+Term_PSB1C3 on plates wiht Chlorenphenicol.incubated at 37°C in anaerobic condition over night
  • 4 - Purify 4 single purple colony of promoter fnr(repressor)+ RBS_AmilCP+Term_PSB1C3 on two plates wiht Chlorenphenicol .incubated at 37°C in aerobic and anaerobic condition over night
  • 5- Purify single clone of B5 promoter fnr(activator)nirB + RBS_AmilCP+Term_PSB1C3 on plates wiht Chlorenphenicol.incubated at 37°C in anaerobic condition over night
  • 6- Purify single clone of D1, D5, D6 promoter fnr(repressor)+ RBS_AmilCP+Term_PSB1C3 on two plates wiht Chlorenphenicol .incubated at 37°C in aerobic and anaerobic condition over night
  • 7- Purify single clone of C1, C2, C5 ,C6promoter promoter fnr(repressor)+ RBS_LacZ+Term_PSB1C3 on plates wiht Chlorenphenicol and Xgal.incubated at 37°C in aerobic condition over night
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