Team:ETH Zurich/References


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Quorum sensing

Antunes L.C., Ferreira R.B., Lostroh C.P., Greenberg E.P.; Journal of bacteriology 2008 July; 190(13): 4392–4397.
A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites PMC

Basu S., Gerchman Y., Collins C.H., Arnold F.H., Weiss R.; Nature; 2005 Apr; 434: 1130-1134.
A synthetic multicellular system for programmed pattern formation. Nature

Garcia-Ojalvo J., Elowitz M.B., Strogatz S.H.; PNAS; 2004 Jul; 101(30): 10955–10960.
Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing. PNAS

Geske G.D., Mattmann M.E., Blackwell H.E.; Bioorganic & Medicinal Chemistry Letters; 2008 Nov; 18(12): 5978–5981.
Evaluation of a focused library of N-aryl L-homoserine lactones reveals a new set of potent quorum sensing modulators. PubMed

Horswill A.R., Stoodley P., Stewart P.S., Parsek M.R.; Anal Bioanal Chem.; 2007 Jan; 387(2): 371–380.
The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities. PMC

Daniel R., Rubens J.R., Sarpeshkar R., Lu TK.; Nature; 2013 May; 497: 619–623.
Synthetic analog computation in living cells. Nature

Ravn L, Christensen AB, Molin S, Givskov M, Gram L. J Microbiol Methods; 2001 Apr;44(3):239-51
Methods for detecting acylated homoserine lactones produced by Gram-negative bacteria and their application in studies of AHL-production kinetics. PubMed

Schaefer A.L., Val D.L., Hanzelka B.L. , Cronan, Jr J.E., Greenberg E.P.; Proc Natl Acad Sci. ; 1996 Sept; 93(18): 9505–9509.
Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein. PMC

Stewart P.S.; Journal of Bacteriology; 2003 Mar.; 185(5): 1485-1491.
Diffusion in Biofilms. JB

You L., Cox R.S., Weiss R., Arnold F.H.; Nature 428, 868-871
Programmed population control by cell–cell communication and regulated killing PubMed

Zhang H.B., Wang L.H., Zhang L.H.;Curr Protoc Microbiol. 2007 Jun;
Detection and Analysis of Quorum-Quenching Enzymes Against Acyl Homoserine Lactone Quorum-Sensing Signals. Wiley Online library


Choi JH, Jeong KJ, Kim SC, Lee SY; Appl Microbiol Biotechnol. 2000 Jun; 53(6): 640-5. Efficient secretory production of alkaline phosphatase by high cell density culture of recombinant Escherichia coli using the Bacillus sp. endoxylanase signal sequence.PubMed

Farias T, Mandrich L, Rossi M, Manco G; Protein Pept Lett. 2007; 14(2):165-9. Biochemical and thermostability features of acetyl esterase Aes from Escherichia coli. PubMed

Jefferson RA; US 5432081 A. 1995 Jul. Host cells transformed with the E. coli glucoronide permease gene

Jokerst J.C., Adkins J.A., Bisha B., Mentele M.M., Goodridge L. D., Henry C. S.; Chem.; 2012, 84:2900−2907
Development of a Paper-Based Analytical Device for Colorimetric Detection of Select Foodborne Pathogens pubs.acs

Joly N., Danot O., Schlegel A., Boos W., Richet E.; J Biol Chem. 2002 May; 277(19):16606-13.
The Aes protein directly controls the activity of MalT, the central transcriptional activator of the Escherichia coli maltose regulon. PubMed

Kanaya S., Koyanagi T., Kanaya E.; Biochem. J. 1998; 332:75-80.
An esterase from Escherichia coli with a sequence similarity to hormone-sensitive lipase. PubMed

Kiernan JA; Biotech Histochem. 2007 Apr; 82(2):73-103. Indigogenic substrates for detection and localization of enzymes. PubMed


Corish P, Tyler-Smith C; Protein Engineering. 199; 12(12): 1053-1040.
Attenuation of green fluorescent protein half-life in mammalian cells. peds

Fatin-Rouge N., Starchev K., Buffle J.; Biophysical Journal. 2004 May; 86:2710–2719.
Size Effects on Diffusion Processes within Agarose Gels PMC

Gordon P.V., Muratov C.B., Shvartsman S.Y.; J Chem Phys . 2013 Mar; 138(10):104121

Local accumulation times for source, diffusion, and degradation models in two and three dimensions. PubMed