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Team:ETH Zurich/Modeling
From 2013.igem.org
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<h1>Circuit containing hydrolases</h1> | <h1>Circuit containing hydrolases</h1> | ||
| - | A seven-species model was used to model the spatiotemporal behaviour of our multicellular sender–receiver system. The model was based on differential equations with Hill functions that captured the activation of protein synthesis as a function of the concentration of the signalling molecule. | + | <p align ="justify">A seven-species model was used to model the spatiotemporal behaviour of our multicellular sender–receiver system. The model was based on differential equations with Hill functions that captured the activation of protein synthesis as a function of the concentration of the signalling molecule. </p><br> |
| - | + | For the agar plate and mine cells modules, we use the system of equations and parameters set of the previous [https://2013.igem.org/Team:ETH_Zurich/GFP ''simulation'']. | |
| - | Mine Cells | + | <h1>Mine Cells</h1> |
The PDEs for the states involved in the sender module are given below: | The PDEs for the states involved in the sender module are given below: | ||
<br clear="all"/> | <br clear="all"/> | ||
| + | [[File:PDE_MineCell_GFP.png|700px|center|thumb|<b>Equation system 5:</b> System of Differential equations for mine cells.]] | ||
| - | [[File: | + | <h1>Agar Plate</h1> |
| + | [[File:plate_AHL.png|500px|center|thumb|<b>Equation 6: </b> Processes taking place on the agar plate: diffusion and decay of OHHL]] | ||
<h1>Receiver Cells</h1> | <h1>Receiver Cells</h1> | ||
Revision as of 14:13, 3 October 2013
Contents |
Circuit containing hydrolases
A seven-species model was used to model the spatiotemporal behaviour of our multicellular sender–receiver system. The model was based on differential equations with Hill functions that captured the activation of protein synthesis as a function of the concentration of the signalling molecule.
For the agar plate and mine cells modules, we use the system of equations and parameters set of the previous simulation.
Mine Cells
The PDEs for the states involved in the sender module are given below:
Agar Plate
Receiver Cells
Receiver cells are engineered to respond differently to two concentration levels of AHL. Basically, cells should be capable of produce a visible response for the player, in order to discriminate between the presence of 0, 1 or 2 mine cells around them in the immediate vicinity in a three neighbours setup. This goal was achieved by regulated expression of two hydrolases, under control of Plux promoters, GusA and AES. Such enzymes can catalyze the hydrolysis of various chromogenic compounds giving rise to a colored response.
The intracellular species of interest in the receiver cells included LuxR, AHL, LuxR/AHL complex (denoted as R) and the hydrolases (GusA and AES).
To distinguish between AHL-levels, the expression of the hydrolases is controlled by PLuxR promoters mutants, which are sensitive to different concentration of the dimer LuxR-AHL (denoted as R) given by the number of surrounding mines.
