Team:ETH Zurich/RefModel

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<h1>References</h1>
<h1>References</h1>
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<p> Antunes L.C., Ferreira R.B., Lostroh C.P., Greenberg E.P.; <i>Journal of bacteriology</i> 2008 July; 190(13): 4392–4397.<br>
 
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<i>A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites.</i>
 
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[http://www.ncbi.nlm.nih.gov/pubmed/18083819 PubMed]</p>
 
<html><a id="Basu2005" class="frog"></a></html>
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<i>A synthetic multicellular system for programmed pattern formation</i>.
<i>A synthetic multicellular system for programmed pattern formation</i>.
  [http://www.nature.com/nature/journal/v434/n7037/abs/nature03461.html Nature]</p>
  [http://www.nature.com/nature/journal/v434/n7037/abs/nature03461.html Nature]</p>
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<html><a id="Corish1999" class="frog"></a></html>
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<p>Corish P, Tyler-Smith C; <i>Protein Engineering</i>. 199; 12(12): 1053-1040. <br>
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<i>Attenuation of green fluorescent protein half-life in mammalian cells.</i>
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[http://peds.oxfordjournals.org/content/12/12/1035.full peds]</p>
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<html><a id="Farias2007" class="frog"></a></html>
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<p> Farias T, Mandrich L, Rossi M, Manco G; Protein Pept Lett. 2007; 14(2):165-9.
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<i>Biochemical and thermostability features of acetyl esterase Aes from Escherichia coli.</i>
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[http://www.ncbi.nlm.nih.gov/pubmed/17305603 PubMed] </p>
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<html><a id="Fatin2004" class="frog"></a></html>
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<p>Fatin-Rouge N., Starchev K., Buffle J.; <i>Biophysical Journal</i>. 2004 May; 86:2710–2719.<br>
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<i>Size Effects on Diffusion Processes within Agarose Gels</i>
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[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304142/ PMC]</p>
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<i>Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing. </i>
<i>Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing. </i>
[http://www.pnas.org/content/101/30/10955.long PNAS]</p>
[http://www.pnas.org/content/101/30/10955.long PNAS]</p>
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<p>Geske G.D., Mattmann  M.E., Blackwell H.E.; <i> Bioorganic & Medicinal Chemistry Letters</i>; 2008 Nov; 18(12): 5978–5981. <br>
 
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<i>Evaluation of a focused library of N-aryl L-homoserine lactones reveals a new set of potent quorum sensing modulators. </i>[http://www.ncbi.nlm.nih.gov/pubmed/18760602 PubMed]</p>
 
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<i>The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities. </i>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797063/ PMC] </p>
<i>The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities. </i>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797063/ PMC] </p>
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<p>Daniel R., Rubens J.R., Sarpeshkar R., Lu TK.; <i> Nature</i>; 2013 May; 497: 619–623.<br>
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<html><a id="Jefferson1995" class="frog"></a></html>  
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<i>Synthetic analog computation in living cells. </i> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature12148.html Nature]</p>
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<p> Jefferson RA; US 5432081 A. 1995 Jul.  
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<i>Host cells transformed with the ''E. coli'' glucoronide permease gene</i> </p>
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<p>Ravn L, Christensen AB, Molin S, Givskov M, Gram L. J Microbiol Methods; 2001 Apr;44(3):239-51<br>
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<i>Methods for detecting acylated homoserine lactones produced by Gram-negative bacteria and their application in studies of AHL-production kinetics. </i>[http://www.ncbi.nlm.nih.gov/pubmed/11240047  PubMed]</p>
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<p>Schaefer A.L., Val D.L., Hanzelka B.L. , Cronan, Jr J.E., Greenberg  E.P.; <i> Proc Natl Acad Sci. </i>; 1996 Sept; 93(18): 9505–9509.<br>
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<i>Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein. </i>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC38458/ PMC] </p>
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<i>Diffusion in Biofilms.</i>
<i>Diffusion in Biofilms.</i>
[http://jb.asm.org/content/185/5/1485.full JB]</p>
[http://jb.asm.org/content/185/5/1485.full JB]</p>
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<p>You L., Cox R.S., Weiss R., Arnold F.H.; <i>Nature</i> 428, 868-871<br>
 
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<i>Programmed population control by cell–cell communication and regulated killing</i>
 
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[http://www.ncbi.nlm.nih.gov/pubmed/15064770 PubMed] </p>
 
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<p>Zhang H.B., Wang L.H., Zhang L.H.;<i>Curr Protoc Microbiol.</i> 2007 Jun; <br>
 
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<i>Detection and Analysis of Quorum-Quenching Enzymes Against Acyl Homoserine Lactone Quorum-Sensing Signals.</i> [http://onlinelibrary.wiley.com/doi/10.1002/9780471729259.mc01c03s05/full  Wiley Online library]</p>
 
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<p>Choi JH, Jeong KJ, Kim SC, Lee SY; Appl Microbiol Biotechnol. 2000 Jun; 53(6): 640-5.
 
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<i>Efficient secretory production of alkaline phosphatase by high cell density culture of recombinant Escherichia coli using the Bacillus sp. endoxylanase signal sequence.</i>[http://www.ncbi.nlm.nih.gov/pubmed/10919319 PubMed]</p>
 
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<html><a id="Farias2007" class="frog"></a></html>
 
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<p> Farias T, Mandrich L, Rossi M, Manco G; Protein Pept Lett. 2007; 14(2):165-9.
 
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<i>Biochemical and thermostability features of acetyl esterase Aes from Escherichia coli.</i>
 
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[http://www.ncbi.nlm.nih.gov/pubmed/17305603 PubMed] </p>
 
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<html><a id="Jefferson1995" class="frog"></a></html>
 
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<p> Jefferson RA; US 5432081 A. 1995 Jul.
 
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<i>Host cells transformed with the ''E. coli'' glucoronide permease gene</i> </p>
 
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<p>Jokerst J.C., Adkins J.A., Bisha B., Mentele M.M., Goodridge L. D., Henry C. S.;  Chem.; 2012, 84:2900−2907<br>
 
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<i>Development of a Paper-Based Analytical Device for Colorimetric Detection of Select Foodborne Pathogens</i>
 
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[http://pubs.acs.org/doi/pdf/10.1021/ac203466y  pubs.acs]</p>
 
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<p> Joly N., Danot O., Schlegel A., Boos W., Richet E.; J Biol Chem. 2002 May; 277(19):16606-13. <span id="Joly2002"></span><br>
 
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<i>The Aes protein directly controls the activity of MalT, the central transcriptional activator of the ''Escherichia coli'' maltose regulon.</i>
 
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[http://www.ncbi.nlm.nih.gov/pubmed/11867639 PubMed]</p>
 
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<p> Kanaya S., Koyanagi T., Kanaya E.; Biochem. J. 1998; 332:75-80. <span id="Kanaya1998"></span><br>
 
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<i>An esterase from ''Escherichia coli'' with a sequence similarity to hormone-sensitive lipase.</i>
 
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[http://www.ncbi.nlm.nih.gov/pubmed/9576853 PubMed] </p>
 
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<p> Kiernan JA; Biotech Histochem. 2007 Apr; 82(2):73-103. <span id="Kiernan2007"></span>
 
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Indigogenic substrates for detection and localization of enzymes. [http://www.ncbi.nlm.nih.gov/pubmed/17577701 PubMed]</p>
 
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<br>
 
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<html><a id="Corish1999" class="frog"></a></html>
 
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<p>Corish P, Tyler-Smith C; <i>Protein Engineering</i>. 199; 12(12): 1053-1040. <br>
 
-
<i>Attenuation of green fluorescent protein half-life in mammalian cells.</i>
 
-
[http://peds.oxfordjournals.org/content/12/12/1035.full peds]</p>
 
-
 
-
<html><a id="Fatin2004" class="frog"></a></html>
 
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<p>Fatin-Rouge N., Starchev K., Buffle J.; <i>Biophysical Journal</i>. 2004 May; 86:2710–2719.<br>
 
-
<i>Size Effects on Diffusion Processes within Agarose Gels</i>
 
-
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304142/ PMC]</p>
 
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<html><a id="Antunes2007" class="frog"></a></html>
 
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<p>Luis Caetano M. Antunes, Rosana B. R. Ferreira, C. Phoebe Lostroh, and E. Peter Greenberg; <i>Journal of Bacteriology</i>. 2008 July; 190; 13:4392–4397.<br>
 
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<i>A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites</i>
 
-
[http://www.ncbi.nlm.nih.gov/pubmed/18083819 PMC]</p>
 
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Revision as of 16:29, 26 October 2013

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References

Basu S., Gerchman Y., Collins C.H., Arnold F.H., Weiss R.; Nature; 2005 Apr; 434: 1130-1134.
A synthetic multicellular system for programmed pattern formation. [http://www.nature.com/nature/journal/v434/n7037/abs/nature03461.html Nature]

Corish P, Tyler-Smith C; Protein Engineering. 199; 12(12): 1053-1040.
Attenuation of green fluorescent protein half-life in mammalian cells. [http://peds.oxfordjournals.org/content/12/12/1035.full peds]

Farias T, Mandrich L, Rossi M, Manco G; Protein Pept Lett. 2007; 14(2):165-9. Biochemical and thermostability features of acetyl esterase Aes from Escherichia coli. [http://www.ncbi.nlm.nih.gov/pubmed/17305603 PubMed]

Fatin-Rouge N., Starchev K., Buffle J.; Biophysical Journal. 2004 May; 86:2710–2719.
Size Effects on Diffusion Processes within Agarose Gels [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304142/ PMC]

Garcia-Ojalvo J., Elowitz M.B., Strogatz S.H.; PNAS; 2004 Jul; 101(30): 10955–10960.
Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing. [http://www.pnas.org/content/101/30/10955.long PNAS]

Horswill A.R., Stoodley P., Stewart P.S., Parsek M.R.; Anal Bioanal Chem.; 2007 Jan; 387(2): 371–380.
The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797063/ PMC]

Jefferson RA; US 5432081 A. 1995 Jul. Host cells transformed with the E. coli glucoronide permease gene

Stewart P.S.; Journal of Bacteriology; 2003 Mar.; 185(5): 1485-1491.
Diffusion in Biofilms. [http://jb.asm.org/content/185/5/1485.full JB]


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