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Team:ETH Zurich/References
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<b>Quorum sensing</b> | <b>Quorum sensing</b> | ||
| - | <p> | + | <html><a id="Antunes2007" class="frog"></a></html> |
| - | <i>A | + | <p> Antunes L.C., Ferreira R.B., Lostroh C.P., Greenberg E.P.; <i>Journal of bacteriology</i> 2008 July; 190(13): 4392–4397.<br> |
| + | <i>A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites</i> | ||
| + | [http://www.ncbi.nlm.nih.gov/pubmed/18083819 PMC]</p> | ||
| - | <p> | + | <html><a id="Basu2005" class="frog"></a></html> |
| - | <i> | + | <p>Basu S., Gerchman Y., Collins C.H., Arnold F.H., Weiss R.; <i>Nature</i>; 2005 Apr; 434: 1130-1134. <br> |
| + | <i>A synthetic multicellular system for programmed pattern formation</i>. | ||
| + | [http://www.nature.com/nature/journal/v434/n7037/abs/nature03461.html Nature]</p> | ||
| - | <p> | + | <html><a id="Garcia2004" class="frog"></a></html> |
| - | <i> | + | <p> Garcia-Ojalvo J., Elowitz M.B., Strogatz S.H.; <i>PNAS</i>; 2004 Jul; 101(30): 10955–10960. <br> |
| + | <i>Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing. </i> | ||
| + | [http://www.pnas.org/content/101/30/10955.long PNAS]</p> | ||
| - | <p> | + | <p>Geske G.D., Mattmann M.E., Blackwell H.E.; <i> Bioorganic & Medicinal Chemistry Letters</i>; 2008 Nov; 18(12): 5978–5981. <br> |
| - | <i>Synthetic analog computation in living cells</i> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature12148.html Nature]</p> | + | <i>Evaluation of a focused library of N-aryl L-homoserine lactones reveals a new set of potent quorum sensing modulators. </i>[http://www.ncbi.nlm.nih.gov/pubmed/18760602 PubMed]</p> |
| + | |||
| + | <html><a id="Horswill2007" class="frog"></a></html> | ||
| + | <p>Horswill A.R., Stoodley P., Stewart P.S., Parsek M.R.; <i> Anal Bioanal Chem</i>.; 2007 Jan; 387(2): 371–380.<br> | ||
| + | <i>The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities. </i>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797063/ PMC] </p> | ||
| + | |||
| + | <p>Daniel R., Rubens J.R., Sarpeshkar R., Lu TK.; <i> Nature</i>; 2013 May; 497: 619–623.<br> | ||
| + | <i>Synthetic analog computation in living cells. </i> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature12148.html Nature]</p> | ||
<p>Ravn L, Christensen AB, Molin S, Givskov M, Gram L. J Microbiol Methods; 2001 Apr;44(3):239-51<br> | <p>Ravn L, Christensen AB, Molin S, Givskov M, Gram L. J Microbiol Methods; 2001 Apr;44(3):239-51<br> | ||
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<p>Schaefer A.L., Val D.L., Hanzelka B.L. , Cronan, Jr J.E., Greenberg E.P.; <i> Proc Natl Acad Sci. </i>; 1996 Sept; 93(18): 9505–9509.<br> | <p>Schaefer A.L., Val D.L., Hanzelka B.L. , Cronan, Jr J.E., Greenberg E.P.; <i> Proc Natl Acad Sci. </i>; 1996 Sept; 93(18): 9505–9509.<br> | ||
| - | <i>Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein.</i>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC38458/ PMC] </p> | + | <i>Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein. </i>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC38458/ PMC] </p> |
| - | <p> | + | <html><a id="Stewart2003" class="frog"></a></html> |
| + | <p>Stewart P.S.;<i> Journal of Bacteriology</i>; 2003 Mar.; 185(5): 1485-1491. <br> | ||
| + | <i>Diffusion in Biofilms.</i> | ||
| + | [http://jb.asm.org/content/185/5/1485.full JB]</p> | ||
| - | <p> | + | <p>You L., Cox R.S., Weiss R., Arnold F.H.; <i>Nature</i> 428, 868-871<br> |
| + | <i>Programmed population control by cell–cell communication and regulated killing</i> | ||
| + | [http://www.ncbi.nlm.nih.gov/pubmed/15064770 PubMed] </p> | ||
| + | <p>Zhang H.B., Wang L.H., Zhang L.H.;<i>Curr Protoc Microbiol.</i> 2007 Jun; <br> | ||
| + | <i>Detection and Analysis of Quorum-Quenching Enzymes Against Acyl Homoserine Lactone Quorum-Sensing Signals.</i> [http://onlinelibrary.wiley.com/doi/10.1002/9780471729259.mc01c03s05/full Wiley Online library]</p> | ||
| + | <br> | ||
<b>Hydrolases</b> | <b>Hydrolases</b> | ||
| - | |||
| - | |||
| - | |||
<p>Choi JH, Jeong KJ, Kim SC, Lee SY; Appl Microbiol Biotechnol. 2000 Jun; 53(6): 640-5. | <p>Choi JH, Jeong KJ, Kim SC, Lee SY; Appl Microbiol Biotechnol. 2000 Jun; 53(6): 640-5. | ||
<i>Efficient secretory production of alkaline phosphatase by high cell density culture of recombinant Escherichia coli using the Bacillus sp. endoxylanase signal sequence.</i>[http://www.ncbi.nlm.nih.gov/pubmed/10919319 PubMed]</p> | <i>Efficient secretory production of alkaline phosphatase by high cell density culture of recombinant Escherichia coli using the Bacillus sp. endoxylanase signal sequence.</i>[http://www.ncbi.nlm.nih.gov/pubmed/10919319 PubMed]</p> | ||
| - | <p> | + | <html><a id="Farias2007" class="frog"></a></html> |
| - | + | <p> Farias T, Mandrich L, Rossi M, Manco G; Protein Pept Lett. 2007; 14(2):165-9. | |
| + | <i>Biochemical and thermostability features of acetyl esterase Aes from Escherichia coli.</i> | ||
| + | [http://www.ncbi.nlm.nih.gov/pubmed/17305603 PubMed] </p> | ||
| - | <p> Jefferson RA; US 5432081 A. 1995 Jul. | + | <html><a id="Jefferson1995" class="frog"></a></html> |
| + | <p> Jefferson RA; US 5432081 A. 1995 Jul. | ||
<i>Host cells transformed with the ''E. coli'' glucoronide permease gene</i> </p> | <i>Host cells transformed with the ''E. coli'' glucoronide permease gene</i> </p> | ||
| - | <p> | + | <p>Jokerst J.C., Adkins J.A., Bisha B., Mentele M.M., Goodridge L. D., Henry C. S.; Chem.; 2012, 84:2900−2907<br> |
| - | <i> | + | <i>Development of a Paper-Based Analytical Device for Colorimetric Detection of Select Foodborne Pathogens</i> |
| - | [http://www.ncbi.nlm.nih.gov/pubmed/ | + | [http://pubs.acs.org/doi/pdf/10.1021/ac203466y pubs.acs]</p> |
| + | |||
| + | <p> Joly N., Danot O., Schlegel A., Boos W., Richet E.; J Biol Chem. 2002 May; 277(19):16606-13. <span id="Joly2002"></span><br> | ||
| + | <i>The Aes protein directly controls the activity of MalT, the central transcriptional activator of the ''Escherichia coli'' maltose regulon.</i> | ||
| + | [http://www.ncbi.nlm.nih.gov/pubmed/11867639 PubMed]</p> | ||
| - | <p> Kanaya S, Koyanagi T, Kanaya E; Biochem. J. 1998; 332:75-80. <span id="Kanaya1998"></span><br> | + | <p> Kanaya S., Koyanagi T., Kanaya E.; Biochem. J. 1998; 332:75-80. <span id="Kanaya1998"></span><br> |
<i>An esterase from ''Escherichia coli'' with a sequence similarity to hormone-sensitive lipase.</i> | <i>An esterase from ''Escherichia coli'' with a sequence similarity to hormone-sensitive lipase.</i> | ||
[http://www.ncbi.nlm.nih.gov/pubmed/9576853 PubMed] </p> | [http://www.ncbi.nlm.nih.gov/pubmed/9576853 PubMed] </p> | ||
| - | <p> | + | <p> Kiernan JA; Biotech Histochem. 2007 Apr; 82(2):73-103. <span id="Kiernan2007"></span> |
| - | <i> | + | Indigogenic substrates for detection and localization of enzymes. [http://www.ncbi.nlm.nih.gov/pubmed/17577701 PubMed]</p> |
| - | [http://www.ncbi.nlm.nih.gov/pubmed/ | + | <br> |
| + | |||
| + | <b> Others </b> | ||
| + | <html><a id="Corish1999" class="frog"></a></html> | ||
| + | <p>Corish P, Tyler-Smith C; <i>Protein Engineering</i>. 199; 12(12): 1053-1040. <br> | ||
| + | <i>Attenuation of green fluorescent protein half-life in mammalian cells.</i> | ||
| + | [http://peds.oxfordjournals.org/content/12/12/1035.full peds]</p> | ||
| + | |||
| + | <html><a id="Fatin2004" class="frog"></a></html> | ||
| + | <p>Fatin-Rouge N., Starchev K., Buffle J.; <i>Biophysical Journal</i>. 2004 May; 86:2710–2719.<br> | ||
| + | <i>Size Effects on Diffusion Processes within Agarose Gels</i> | ||
| + | [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304142/ PMC]</p> | ||
| + | |||
| + | <p>Gordon P.V., Muratov C.B., Shvartsman S.Y.;<i> J Chem Phys </i>. 2013 Mar; 138(10):104121</p> | ||
| + | <i>Local accumulation times for source, diffusion, and degradation models in two and three dimensions. </i> | ||
| + | [http://www.ncbi.nlm.nih.gov/pubmed/23514479 PubMed] | ||
| + | |||
| + | <br clear="all"/> | ||
| + | |||
| + | {{:Team:ETH_Zurich/templates/footer}} | ||
Latest revision as of 01:03, 29 October 2013
References
Quorum sensing
Antunes L.C., Ferreira R.B., Lostroh C.P., Greenberg E.P.; Journal of bacteriology 2008 July; 190(13): 4392–4397.
A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites
[http://www.ncbi.nlm.nih.gov/pubmed/18083819 PMC]
Basu S., Gerchman Y., Collins C.H., Arnold F.H., Weiss R.; Nature; 2005 Apr; 434: 1130-1134.
A synthetic multicellular system for programmed pattern formation.
[http://www.nature.com/nature/journal/v434/n7037/abs/nature03461.html Nature]
Garcia-Ojalvo J., Elowitz M.B., Strogatz S.H.; PNAS; 2004 Jul; 101(30): 10955–10960.
Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing.
[http://www.pnas.org/content/101/30/10955.long PNAS]
Geske G.D., Mattmann M.E., Blackwell H.E.; Bioorganic & Medicinal Chemistry Letters; 2008 Nov; 18(12): 5978–5981.
Evaluation of a focused library of N-aryl L-homoserine lactones reveals a new set of potent quorum sensing modulators. [http://www.ncbi.nlm.nih.gov/pubmed/18760602 PubMed]
Horswill A.R., Stoodley P., Stewart P.S., Parsek M.R.; Anal Bioanal Chem.; 2007 Jan; 387(2): 371–380.
The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797063/ PMC]
Daniel R., Rubens J.R., Sarpeshkar R., Lu TK.; Nature; 2013 May; 497: 619–623.
Synthetic analog computation in living cells. [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature12148.html Nature]
Ravn L, Christensen AB, Molin S, Givskov M, Gram L. J Microbiol Methods; 2001 Apr;44(3):239-51
Methods for detecting acylated homoserine lactones produced by Gram-negative bacteria and their application in studies of AHL-production kinetics. [http://www.ncbi.nlm.nih.gov/pubmed/11240047 PubMed]
Schaefer A.L., Val D.L., Hanzelka B.L. , Cronan, Jr J.E., Greenberg E.P.; Proc Natl Acad Sci. ; 1996 Sept; 93(18): 9505–9509.
Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC38458/ PMC]
Stewart P.S.; Journal of Bacteriology; 2003 Mar.; 185(5): 1485-1491.
Diffusion in Biofilms.
[http://jb.asm.org/content/185/5/1485.full JB]
You L., Cox R.S., Weiss R., Arnold F.H.; Nature 428, 868-871
Programmed population control by cell–cell communication and regulated killing
[http://www.ncbi.nlm.nih.gov/pubmed/15064770 PubMed]
Zhang H.B., Wang L.H., Zhang L.H.;Curr Protoc Microbiol. 2007 Jun;
Detection and Analysis of Quorum-Quenching Enzymes Against Acyl Homoserine Lactone Quorum-Sensing Signals. [http://onlinelibrary.wiley.com/doi/10.1002/9780471729259.mc01c03s05/full Wiley Online library]
Hydrolases
Choi JH, Jeong KJ, Kim SC, Lee SY; Appl Microbiol Biotechnol. 2000 Jun; 53(6): 640-5. Efficient secretory production of alkaline phosphatase by high cell density culture of recombinant Escherichia coli using the Bacillus sp. endoxylanase signal sequence.[http://www.ncbi.nlm.nih.gov/pubmed/10919319 PubMed]
Farias T, Mandrich L, Rossi M, Manco G; Protein Pept Lett. 2007; 14(2):165-9. Biochemical and thermostability features of acetyl esterase Aes from Escherichia coli. [http://www.ncbi.nlm.nih.gov/pubmed/17305603 PubMed]
Jefferson RA; US 5432081 A. 1995 Jul. Host cells transformed with the E. coli glucoronide permease gene
Jokerst J.C., Adkins J.A., Bisha B., Mentele M.M., Goodridge L. D., Henry C. S.; Chem.; 2012, 84:2900−2907
Development of a Paper-Based Analytical Device for Colorimetric Detection of Select Foodborne Pathogens
[http://pubs.acs.org/doi/pdf/10.1021/ac203466y pubs.acs]
Joly N., Danot O., Schlegel A., Boos W., Richet E.; J Biol Chem. 2002 May; 277(19):16606-13.
The Aes protein directly controls the activity of MalT, the central transcriptional activator of the Escherichia coli maltose regulon.
[http://www.ncbi.nlm.nih.gov/pubmed/11867639 PubMed]
Kanaya S., Koyanagi T., Kanaya E.; Biochem. J. 1998; 332:75-80.
An esterase from Escherichia coli with a sequence similarity to hormone-sensitive lipase.
[http://www.ncbi.nlm.nih.gov/pubmed/9576853 PubMed]
Kiernan JA; Biotech Histochem. 2007 Apr; 82(2):73-103. Indigogenic substrates for detection and localization of enzymes. [http://www.ncbi.nlm.nih.gov/pubmed/17577701 PubMed]
Corish P, Tyler-Smith C; Protein Engineering. 199; 12(12): 1053-1040.
Attenuation of green fluorescent protein half-life in mammalian cells.
[http://peds.oxfordjournals.org/content/12/12/1035.full peds]
Fatin-Rouge N., Starchev K., Buffle J.; Biophysical Journal. 2004 May; 86:2710–2719.
Size Effects on Diffusion Processes within Agarose Gels
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304142/ PMC]
Gordon P.V., Muratov C.B., Shvartsman S.Y.; J Chem Phys . 2013 Mar; 138(10):104121
Local accumulation times for source, diffusion, and degradation models in two and three dimensions. [http://www.ncbi.nlm.nih.gov/pubmed/23514479 PubMed]
