Team:Bielefeld-Germany/Modelling

From 2013.igem.org

(Difference between revisions)
m
m
 
(12 intermediate revisions not shown)
Line 26: Line 26:
#leftcol .bigbutton p{padding-left:5px; padding-right:5px; padding-top:2px;}
#leftcol .bigbutton p{padding-left:5px; padding-right:5px; padding-top:2px;}
-
.bigbutton{width:150px; height:50px; line-height:50px; font-size:1.2em; margin-right:10px; display:table;}
+
.bigbutton{width:110px; height:50px; line-height:50px; font-size:1.2em; margin-right:10px; display:table;}
.bigbutton a{display:block; height:100%;}
.bigbutton a{display:block; height:100%;}
Line 47: Line 47:
<html>
<html>
-
<h1>Modelling</h1>
+
<h1>Modelling - Overview</h1>
-
 
+
<div id="buttonrow" style="padding-top:30px; padding-bottom:70px; padding-left:10px; clear:both;">
-
<div id="buttonrow" style="padding-top:30px; padding-bottom:70px; padding-left:45px; clear:both;">
+
<div class="bigbutton">
<div class="bigbutton">
<a href="https://2013.igem.org/Team:Bielefeld-Germany/Modelling">Overview</a></div>
<a href="https://2013.igem.org/Team:Bielefeld-Germany/Modelling">Overview</a></div>
Line 56: Line 55:
<a href="https://2013.igem.org/Team:Bielefeld-Germany/Modelling/Inter">Intermediates</a></div>
<a href="https://2013.igem.org/Team:Bielefeld-Germany/Modelling/Inter">Intermediates</a></div>
<div class="bigbutton">
<div class="bigbutton">
-
<a href="https://2013.igem.org/Team:Bielefeld-Germany/Modelling/Reduction">Mediator Reduction</a></div>
+
<p><a href="https://2013.igem.org/Team:Bielefeld-Germany/Modelling/Reduction">Mediator<br> Reduction</a></p></div>
<div class="bigbutton">
<div class="bigbutton">
-
<a href="https://2013.igem.org/Team:Bielefeld-Germany/Modelling/Optimal">Optimal conditions</a></div>
+
<p><a href="https://2013.igem.org/Team:Bielefeld-Germany/Modelling/Oxidation">Mediator<br> Oxidation</a></p></div>
-
</div>
+
-
 
+
-
<div id="buttonrow" style="padding-top:0px; padding-bottom:70px; padding-left:205px; clear:both;">
+
<div class="bigbutton">
<div class="bigbutton">
-
<a href="https://2013.igem.org/Team:Bielefeld-Germany/Modelling#Mediator_Oxidation">Oxidation</a></div>
+
<p><a href="https://2013.igem.org/Team:Bielefeld-Germany/Modelling/Optimal">Optimal<br> conditions</a></p></div>
<div class="bigbutton">
<div class="bigbutton">
-
<a href="https://2013.igem.org/Team:Bielefeld-Germany/Modelling#Two_Reactions">Two Reactions</a></div>
+
<p><a href="https://2013.igem.org/Team:Bielefeld-Germany/Modelling/Two_Reactions">Two<br> Reactions</a></p></div>
</div>
</div>
</html>
</html>
-
 
==Approach==
==Approach==
Line 79: Line 74:
-
* Generation of intermediates NADH/H+  in the metabolic pathway of ''E.coli''<br>
+
* Generation of intermediates NADH+H<sup>+</sup> in the metabolic pathway of ''E.coli''<br>
* Reduction of oxidized mediators via the intermediate NADH <br>
* Reduction of oxidized mediators via the intermediate NADH <br>
* Transfer of the electrons from reduced mediator to the electrode
* Transfer of the electrons from reduced mediator to the electrode
Line 85: Line 80:
<br><br><br><br>
<br><br><br><br>
-
 
-
==Mediator Oxidation==
 
-
<p align="justify">
 
-
In a third electrochemical reaction the reduced mediator is regenerated at the electrode.This electrochemical oxidation at the anode surface occurs as shown in equation: <br><br>
 
-
 
-
<br>
 
-
,where M<sub>red</sub> is the reduced mediator,
 
-
M<sub>ox</sub> the oxidized mediator and
 
-
k3 is the rate constant of the reaction
 
-
<br>
 
-
 
-
Then the current output can be calculated based on formula according to the Faraday's law:<br>
 
-
 
-
<br>
 
-
,where I is the current density [A]
 
-
[Mred] is the concentration of reduced mediator in the chamber
 
-
n is the number of electrons taking part in the electrode reaction,
 
-
F is the Faradays constant (96 500 C) and
 
-
k3 is the reaction rate, mentioned above.
 
-
 
-
</p>
 
<br><br><br><br>
<br><br><br><br>

Latest revision as of 03:29, 29 October 2013



Modelling - Overview

Approach

In a Microbial Fuel Cell (MFC) the chemical energy is transformed into the electrical energy via a cascade of electrochemical reactions. Electrons are produced in the metabolic pathways and can be extracted from the cell and concentrated at the electrode by the electric potential differences. Alternatively the electrons can be transferred to the oxidized mediator molecules that transfer them further to the electrode. There is a variety of parameters and interactions that influence electricity generation. Therefore, there is the need to identify the bottleneck reactions and limiting factors. This approach reduces the complexity of the analysis and can give a deeper insight on the most important processes involved in the electricity generation.


In our theoretical analysis the focus was set to three bottleneck reactions involved in the electron flow from the metabolism of the bacterial cells to the cathode:


  • Generation of intermediates NADH+H+ in the metabolic pathway of E.coli
  • Reduction of oxidized mediators via the intermediate NADH
  • Transfer of the electrons from reduced mediator to the electrode













Contents