Team:ETH Zurich/References

From 2013.igem.org

(Difference between revisions)
Line 7: Line 7:
<i>A synthetic multicellular system for programmed pattern formation</i>. [http://www.nature.com/nature/journal/v434/n7037/abs/nature03461.html Nature]</p>
<i>A synthetic multicellular system for programmed pattern formation</i>. [http://www.nature.com/nature/journal/v434/n7037/abs/nature03461.html Nature]</p>
-
<p>Geske G.D., Mattmann  M.E., Blackwell H.E.; <i> Bioorganic & Medicinal Chemistry Letters </i>; 2008 Nov; 18(12): 5978–5981. <br>
+
<p>Geske G.D., Mattmann  M.E., Blackwell H.E.; <i> Bioorganic & Medicinal Chemistry Letters</i>; 2008 Nov; 18(12): 5978–5981. <br>
<i>Evaluation of a focused library of N-aryl L-homoserine lactones reveals a new set of potent quorum sensing modulators. </i>[http://www.ncbi.nlm.nih.gov/pubmed/18760602 PubMed]</p>
<i>Evaluation of a focused library of N-aryl L-homoserine lactones reveals a new set of potent quorum sensing modulators. </i>[http://www.ncbi.nlm.nih.gov/pubmed/18760602 PubMed]</p>
-
<p>Horswill A.R., Stoodley P., Stewart P.S., Parsek M.R.; <i> Anal Bioanal Chem </i>. 2007 Jan; 387(2): 371–380.<br>
+
<p>Horswill A.R., Stoodley P., Stewart P.S., Parsek M.R.; <i> Anal Bioanal Chem</i>.; 2007 Jan; 387(2): 371–380.<br>
<i>The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities. </i>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797063/ PMC] </p>
<i>The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities. </i>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797063/ PMC] </p>
-
<p>Ramiz Daniel, Jacob R. Rubens Rahul Sarpeshkar, Timothy K. Lu; doi:10.1038/nature12148<br>
+
<p>Daniel R., Rubens J.R., Sarpeshkar R., Lu TK.; <i> Nature</i>; 2013 May; online<br>
<i>Synthetic analog computation in living cells</i> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature12148.html Nature]</p>
<i>Synthetic analog computation in living cells</i> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature12148.html Nature]</p>
Line 20: Line 20:
<p>Schaefer A.L., Val D.L., Hanzelka B.L. , Cronan, Jr J.E., Greenberg  E.P.; <i> Proc Natl Acad Sci. </i>; 1996 Sept; 93(18): 9505–9509.<br>
<p>Schaefer A.L., Val D.L., Hanzelka B.L. , Cronan, Jr J.E., Greenberg  E.P.; <i> Proc Natl Acad Sci. </i>; 1996 Sept; 93(18): 9505–9509.<br>
-
<i>Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein.</i>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC38458/ PMC] </p>   
+
<i>Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein. </i>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC38458/ PMC] </p>   
<p>Lingchong You, Robert Sidney Cox, Ron Weiss, Frances H. Arnold; Nature 428, 868-871<br><i>Programmed population control by cell–cell communication and regulated killing</i></p>
<p>Lingchong You, Robert Sidney Cox, Ron Weiss, Frances H. Arnold; Nature 428, 868-871<br><i>Programmed population control by cell–cell communication and regulated killing</i></p>

Revision as of 15:15, 13 September 2013

Header2.png
80px-Eth igem logo.png

References

Quorum sensing

Basu S., Gerchman Y., Collins C.H., Arnold F.H., Weiss R.; Nature; 2005 Apr; 434: 1130-1134.
A synthetic multicellular system for programmed pattern formation. [http://www.nature.com/nature/journal/v434/n7037/abs/nature03461.html Nature]

Geske G.D., Mattmann M.E., Blackwell H.E.; Bioorganic & Medicinal Chemistry Letters; 2008 Nov; 18(12): 5978–5981.
Evaluation of a focused library of N-aryl L-homoserine lactones reveals a new set of potent quorum sensing modulators. [http://www.ncbi.nlm.nih.gov/pubmed/18760602 PubMed]

Horswill A.R., Stoodley P., Stewart P.S., Parsek M.R.; Anal Bioanal Chem.; 2007 Jan; 387(2): 371–380.
The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797063/ PMC]

Daniel R., Rubens J.R., Sarpeshkar R., Lu TK.; Nature; 2013 May; online
Synthetic analog computation in living cells [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature12148.html Nature]

Ravn L, Christensen AB, Molin S, Givskov M, Gram L. J Microbiol Methods; 2001 Apr;44(3):239-51
Methods for detecting acylated homoserine lactones produced by Gram-negative bacteria and their application in studies of AHL-production kinetics. [http://www.ncbi.nlm.nih.gov/pubmed/11240047 PubMed]

Schaefer A.L., Val D.L., Hanzelka B.L. , Cronan, Jr J.E., Greenberg E.P.; Proc Natl Acad Sci. ; 1996 Sept; 93(18): 9505–9509.
Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC38458/ PMC]

Lingchong You, Robert Sidney Cox, Ron Weiss, Frances H. Arnold; Nature 428, 868-871
Programmed population control by cell–cell communication and regulated killing

Hai-Bao Zhang, Lian-Hui Wang, Lian-Hui Zhang, 1 JUN 2007 ; DOI: 10.1002/9780471729259.mc01c03s05 UNIT 1C.3
Detection and Analysis of Quorum-Quenching Enzymes Against Acyl Homoserine Lactone Quorum-Sensing Signals. [http://onlinelibrary.wiley.com/doi/10.1002/9780471729259.mc01c03s05/full Wiley Online library]


Hydrolases

J. C. Jokerst,J. A. Adkins,B. Bisha,M. M. Mentele, L. D. Goodridge and C. S. Henry ; Chem. 2012, 84, 2900−2907
Development of a Paper-Based Analytical Device for Colorimetric, Detection of Select Foodborne Pathogens [http://pubs.acs.org/doi/pdf/10.1021/ac203466y pubs.acs]

Choi JH, Jeong KJ, Kim SC, Lee SY; Appl Microbiol Biotechnol. 2000 Jun; 53(6): 640-5. Efficient secretory production of alkaline phosphatase by high cell density culture of recombinant Escherichia coli using the Bacillus sp. endoxylanase signal sequence.[http://www.ncbi.nlm.nih.gov/pubmed/10919319 PubMed]

Kiernan JA; Biotech Histochem. 2007 Apr; 82(2):73-103. Indigogenic substrates for detection and localization of enzymes. [http://www.ncbi.nlm.nih.gov/pubmed/17577701 PubMed]

Jefferson RA; US 5432081 A. 1995 Jul. Host cells transformed with the E. coli glucoronide permease gene

Farias T, Mandrich L, Rossi M, Manco G; Protein Pept Lett. 2007; 14(2):165-9. Biochemical and thermostability features of acetyl esterase Aes from Escherichia coli. [http://www.ncbi.nlm.nih.gov/pubmed/17305603 PubMed]

Kanaya S, Koyanagi T, Kanaya E; Biochem. J. 1998; 332:75-80.
An esterase from Escherichia coli with a sequence similarity to hormone-sensitive lipase. [http://www.ncbi.nlm.nih.gov/pubmed/9576853 PubMed]

Joly N, Danot O, Schlegel A, Boos W, Richet E; J Biol Chem. 2002 May; 277(19):16606-13.
The Aes protein directly controls the activity of MalT, the central transcriptional activator of the Escherichia coli maltose regulon. [http://www.ncbi.nlm.nih.gov/pubmed/11867639 PubMed]